Wall clock time and date at job start Mon Mar 8 2021 09:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33321 * 125.95887 * 2 1 4 4 C 1.50707 * 122.70409 * 0.02562 * 3 2 1 5 5 O 1.42901 * 109.47173 * 30.00332 * 4 3 2 6 6 Si 1.86304 * 109.46848 * 149.99840 * 4 3 2 7 7 N 1.32114 * 114.58227 * 179.75788 * 3 2 1 8 8 C 1.29681 * 116.86621 * 0.47043 * 7 3 2 9 9 N 1.38609 * 124.94845 * 179.81453 * 8 7 3 10 10 C 1.46506 * 120.00134 * 179.72367 * 9 8 7 11 11 C 1.52997 * 109.47289 * 180.02562 * 10 9 8 12 12 H 1.09002 * 109.47196 * 304.99846 * 11 10 9 13 13 C 1.53000 * 109.47341 * 64.99653 * 11 10 9 14 14 C 1.53001 * 109.47194 * 179.97438 * 13 11 10 15 15 C 1.53001 * 109.47349 * 300.00744 * 14 13 11 16 16 H 1.09002 * 109.46801 * 299.99780 * 15 14 13 17 17 C 1.47197 * 109.47003 * 180.02562 * 15 14 13 18 18 N 9.84951 * 135.92118 * 349.83346 * 7 1 2 19 19 C 1.52997 * 109.47219 * 59.99513 * 15 14 13 20 20 C 1.52997 * 109.47504 * 300.00139 * 19 15 14 21 21 S 1.70965 * 110.10188 * 359.55244 * 8 7 3 22 22 H 1.08993 * 109.47491 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46545 * 300.02340 * 1 2 3 24 24 H 1.08999 * 109.46841 * 60.01760 * 1 2 3 25 25 H 1.09002 * 109.47082 * 269.99736 * 4 3 2 26 26 H 0.96701 * 113.99725 * 180.02562 * 5 4 3 27 27 H 1.48501 * 110.00228 * 299.99847 * 6 4 3 28 28 H 1.48499 * 110.00004 * 61.31695 * 6 4 3 29 29 H 0.97001 * 120.00614 * 359.72168 * 9 8 7 30 30 H 1.09001 * 109.47060 * 300.00460 * 10 9 8 31 31 H 1.09004 * 109.47073 * 59.99948 * 10 9 8 32 32 H 1.08994 * 109.47281 * 300.00513 * 13 11 10 33 33 H 1.09006 * 109.46596 * 60.00412 * 13 11 10 34 34 H 1.08995 * 109.46947 * 179.97438 * 14 13 11 35 35 H 1.09005 * 109.46284 * 60.00551 * 14 13 11 36 36 H 1.09004 * 109.46881 * 179.97438 * 19 15 14 37 37 H 1.09002 * 109.47016 * 60.00399 * 19 15 14 38 38 H 1.09002 * 109.47196 * 300.00149 * 20 19 15 39 39 H 1.08993 * 109.47322 * 180.02562 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2899 1.0792 0.0000 4 6 1.7415 2.4829 0.0006 5 8 0.4817 2.5019 0.6747 6 14 2.9328 3.6145 0.8787 7 7 3.5851 0.8186 0.0051 8 6 3.9314 -0.4311 -0.0001 9 7 5.2383 -0.8929 0.0002 10 6 5.5064 -2.3332 0.0001 11 6 7.0179 -2.5706 0.0011 12 1 7.4689 -2.0446 -0.8402 13 6 7.6154 -2.0478 1.3090 14 6 9.1268 -2.2859 1.3103 15 6 9.4071 -3.7847 1.1847 16 1 8.9558 -4.3105 2.0260 17 6 10.8612 -4.0137 1.1866 18 7 11.9845 -4.1888 1.1835 19 6 8.8096 -4.3075 -0.1232 20 6 7.2982 -4.0695 -0.1245 21 16 2.5412 -1.4262 -0.0001 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3632 0.5142 0.8898 24 1 -0.3633 0.5136 -0.8901 25 1 1.6090 2.8216 -1.0270 26 1 0.0692 3.3757 0.7129 27 1 3.1221 3.1635 2.2809 28 1 4.2372 3.6282 0.1692 29 1 5.9755 -0.2624 0.0005 30 1 5.0674 -2.7845 0.8898 31 1 5.0680 -2.7843 -0.8902 32 1 7.4153 -0.9802 1.3987 33 1 7.1643 -2.5740 2.1504 34 1 9.5524 -1.9130 2.2419 35 1 9.5780 -1.7600 0.4689 36 1 9.0097 -5.3752 -0.2129 37 1 9.2609 -3.7817 -0.9646 38 1 6.8469 -4.5953 0.7169 39 1 6.8725 -4.4423 -1.0560 There are 51 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 51 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_16496580_15704122.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:12:24 Heat of formation + Delta-G solvation = 27.519421 kcal Electronic energy + Delta-G solvation = -20843.683665 eV Core-core repulsion = 17685.903423 eV Total energy + Delta-G solvation = -3157.780242 eV No. of doubly occupied orbitals = 51 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 294.114 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.01903 -40.52976 -38.13777 -37.45148 -36.44272 -33.54493 -32.28495 -32.00954 -29.38463 -27.28179 -25.49164 -24.41847 -23.79918 -23.30875 -21.34396 -20.21464 -19.25119 -18.88542 -18.14518 -17.33105 -16.73991 -16.55100 -16.19410 -15.67081 -15.57968 -15.50762 -15.09211 -14.89441 -14.58459 -14.32659 -14.05341 -13.91887 -13.82005 -13.55181 -13.49370 -13.35402 -13.23674 -12.99947 -12.87768 -12.42400 -12.31235 -12.04286 -11.94052 -11.68494 -11.62836 -11.40540 -11.03278 -10.59295 -10.32769 -9.93572 -8.58638 -4.80838 0.07998 0.19878 0.81143 1.40409 1.73259 1.76553 1.80566 1.92176 1.97355 2.37732 2.75789 3.13158 3.33465 3.39199 3.40558 3.73118 3.89091 3.96373 4.01261 4.05349 4.11458 4.18362 4.20366 4.30704 4.35192 4.40646 4.46219 4.52373 4.60444 4.77878 4.79410 4.85155 4.87973 4.91392 4.94376 4.99510 5.12631 5.16685 5.41273 5.56065 6.23634 6.55056 6.63749 6.93759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C -0.227 4.227 3 C 0.099 3.901 4 C -0.035 4.035 5 O -0.545 6.545 6 Si 0.711 3.289 7 N -0.550 5.550 8 C 0.317 3.683 9 N -0.695 5.695 10 C 0.124 3.876 11 C -0.099 4.099 12 H 0.085 0.915 13 C -0.115 4.115 14 C -0.112 4.112 15 C 0.008 3.992 16 H 0.116 0.884 17 C 0.205 3.795 18 N -0.431 5.431 19 C -0.111 4.111 20 C -0.110 4.110 21 S 0.103 5.897 22 H 0.056 0.944 23 H 0.089 0.911 24 H 0.072 0.928 25 H 0.080 0.920 26 H 0.385 0.615 27 H -0.264 1.264 28 H -0.252 1.252 29 H 0.411 0.589 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.097 0.749 -0.959 5.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.350 4.350 3 C -0.030 4.030 4 C -0.147 4.147 5 O -0.351 6.351 6 Si 0.611 3.389 7 N -0.278 5.278 8 C -0.054 4.054 9 N -0.337 5.337 10 C 0.000 4.000 11 C -0.118 4.118 12 H 0.104 0.896 13 C -0.153 4.153 14 C -0.151 4.151 15 C -0.013 4.013 16 H 0.134 0.866 17 C -0.113 4.113 18 N -0.106 5.106 19 C -0.150 4.150 20 C -0.148 4.148 21 S 0.351 5.649 22 H 0.075 0.925 23 H 0.108 0.892 24 H 0.091 0.909 25 H 0.098 0.902 26 H 0.233 0.767 27 H -0.189 1.189 28 H -0.177 1.177 29 H 0.250 0.750 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.096 0.904 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.206 -0.996 -0.473 2.466 hybrid contribution -0.294 0.492 -0.308 0.651 sum -2.501 -0.504 -0.781 2.668 Atomic orbital electron populations 1.20096 0.86226 1.01377 1.03896 1.25152 1.01510 0.92304 1.15995 1.18899 0.86438 0.95104 1.02565 1.23966 0.93028 0.96258 1.01459 1.86429 1.33948 1.35718 1.79002 0.96171 0.78907 0.84666 0.79108 1.65691 1.17227 1.16909 1.27945 1.23195 0.91934 0.91251 0.98995 1.43943 1.01661 1.07288 1.80761 1.21642 0.96786 0.79140 1.02402 1.21425 0.93256 0.97681 0.99458 0.89623 1.21625 0.94435 1.01895 0.97338 1.21567 0.96856 0.93003 1.03659 1.18960 0.82060 0.98845 1.01472 0.86647 1.29245 0.95104 0.93523 0.93475 1.81327 1.12798 1.08237 1.08233 1.21552 0.95525 1.02187 0.95702 1.21495 0.95409 0.94355 1.03516 1.83940 0.96467 1.10512 1.73933 0.92527 0.89209 0.90919 0.90241 0.76680 1.18876 1.17734 0.75018 0.91096 0.91097 0.91021 0.90758 0.90556 0.90760 0.90368 0.90709 0.90648 0.90455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.07 8.91 36.01 0.32 0.25 16 2 C -0.23 -0.71 6.50 -36.02 -0.23 -0.95 16 3 C 0.10 0.40 5.96 -84.18 -0.50 -0.10 16 4 C -0.03 -0.04 2.93 36.01 0.11 0.07 16 5 O -0.54 0.20 9.80 -35.23 -0.35 -0.15 16 6 Si 0.71 0.69 32.08 -169.99 -5.45 -4.76 16 7 N -0.55 -2.64 8.94 -11.36 -0.10 -2.74 16 8 C 0.32 0.82 8.24 -87.69 -0.72 0.10 16 9 N -0.69 0.37 5.44 -62.29 -0.34 0.03 16 10 C 0.12 -0.41 4.92 -4.04 -0.02 -0.43 16 11 C -0.10 0.47 2.23 -90.62 -0.20 0.27 16 12 H 0.09 -0.38 8.14 -51.93 -0.42 -0.81 16 13 C -0.12 0.52 5.08 -26.73 -0.14 0.38 16 14 C -0.11 0.44 5.16 -26.73 -0.14 0.30 16 15 C 0.01 -0.03 2.56 -93.41 -0.24 -0.27 16 16 H 0.12 -0.61 8.14 -51.93 -0.42 -1.03 16 17 C 0.20 0.11 14.65 -20.73 -0.30 -0.20 16 18 N -0.43 -1.90 18.54 42.19 0.78 -1.12 16 19 C -0.11 0.49 5.16 -26.73 -0.14 0.36 16 20 C -0.11 0.59 5.20 -26.73 -0.14 0.45 16 21 S 0.10 0.16 22.32 -107.50 -2.40 -2.24 16 22 H 0.06 0.02 8.14 -51.93 -0.42 -0.41 16 23 H 0.09 0.13 6.73 -51.93 -0.35 -0.22 16 24 H 0.07 0.04 8.14 -51.93 -0.42 -0.38 16 25 H 0.08 -0.03 7.96 -51.93 -0.41 -0.44 16 26 H 0.38 -2.10 8.74 45.56 0.40 -1.70 16 27 H -0.26 -1.34 7.11 56.52 0.40 -0.94 16 28 H -0.25 -1.12 7.11 56.52 0.40 -0.72 16 29 H 0.41 -0.42 7.78 -40.82 -0.32 -0.74 16 30 H 0.07 -0.24 8.14 -51.93 -0.42 -0.66 16 31 H 0.07 -0.24 8.14 -51.93 -0.42 -0.66 16 32 H 0.07 -0.27 7.18 -51.93 -0.37 -0.64 16 33 H 0.07 -0.34 8.14 -51.93 -0.42 -0.77 16 34 H 0.08 -0.27 8.14 -51.93 -0.42 -0.69 16 35 H 0.07 -0.26 8.14 -51.93 -0.42 -0.68 16 36 H 0.08 -0.34 8.14 -51.93 -0.42 -0.76 16 37 H 0.07 -0.29 8.14 -51.93 -0.42 -0.72 16 38 H 0.07 -0.44 8.14 -51.93 -0.42 -0.87 16 39 H 0.08 -0.42 8.14 -51.93 -0.42 -0.85 16 LS Contribution 333.08 15.07 5.02 5.02 Total: 0.00 -9.45 333.08 -10.93 -20.38 By element: Atomic # 1 Polarization: -8.93 SS G_CDS: -5.75 Total: -14.67 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: -2.35 Total: 0.24 kcal Atomic # 7 Polarization: -4.17 SS G_CDS: 0.34 Total: -3.83 kcal Atomic # 8 Polarization: 0.20 SS G_CDS: -0.35 Total: -0.15 kcal Atomic # 14 Polarization: 0.69 SS G_CDS: -5.45 Total: -4.76 kcal Atomic # 16 Polarization: 0.16 SS G_CDS: -2.40 Total: -2.24 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -9.45 -10.93 -20.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16496580_15704122.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.904 kcal (2) G-P(sol) polarization free energy of solvation -9.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds