Wall clock time and date at job start Mon Mar 8 2021 06:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47253 * 2 1 4 4 C 1.52996 * 109.47003 * 240.00195 * 2 1 3 5 5 O 1.45199 * 109.47258 * 119.99979 * 2 1 3 6 6 C 1.34633 * 117.00008 * 59.99669 * 5 2 1 7 7 O 1.21515 * 120.00065 * 0.02562 * 6 5 2 8 8 N 1.34776 * 120.00346 * 179.97438 * 6 5 2 9 9 C 1.46498 * 120.00224 * 180.02562 * 8 6 5 10 10 H 1.08997 * 112.90871 * 336.25964 * 9 8 6 11 11 C 1.53787 * 113.61269 * 107.51002 * 9 8 6 12 12 C 1.53787 * 87.08199 * 89.11558 * 11 9 8 13 13 H 1.09003 * 113.68507 * 270.87671 * 12 11 9 14 14 C 1.52992 * 113.61317 * 139.98416 * 12 11 9 15 15 C 1.52997 * 109.47482 * 87.50189 * 14 12 11 16 16 N 1.46505 * 109.47212 * 179.97438 * 15 14 12 17 17 C 1.38406 * 119.99805 * 179.97438 * 16 15 14 18 18 N 1.32487 * 119.21713 * 359.73708 * 17 16 15 19 19 C 1.32283 * 120.73953 * 179.71372 * 18 17 16 20 20 C 1.38603 * 119.19375 * 0.54310 * 19 18 17 21 21 C 1.50699 * 120.71797 * 179.75208 * 20 19 18 22 22 O 1.42910 * 109.47100 * 244.97654 * 21 20 19 23 23 Si 1.86292 * 109.47442 * 4.97723 * 21 20 19 24 24 C 1.38605 * 118.56212 * 359.73071 * 20 19 18 25 25 N 1.32277 * 119.19635 * 0.02562 * 24 20 19 26 26 C 1.53780 * 87.07977 * 25.42927 * 12 11 9 27 27 H 1.09010 * 109.47310 * 299.99953 * 1 2 3 28 28 H 1.08999 * 109.47313 * 59.99865 * 1 2 3 29 29 H 1.08996 * 109.47068 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47421 * 180.02562 * 3 2 1 31 31 H 1.08999 * 109.47071 * 300.00283 * 3 2 1 32 32 H 1.09002 * 109.47267 * 59.99720 * 3 2 1 33 33 H 1.09001 * 109.47345 * 299.99928 * 4 2 1 34 34 H 1.08999 * 109.47135 * 59.99831 * 4 2 1 35 35 H 1.09000 * 109.47211 * 179.97438 * 4 2 1 36 36 H 0.97008 * 119.99595 * 0.02562 * 8 6 5 37 37 H 1.09001 * 113.61123 * 334.57035 * 11 9 8 38 38 H 1.08997 * 113.61284 * 203.66541 * 11 9 8 39 39 H 1.09002 * 109.47103 * 327.49942 * 14 12 11 40 40 H 1.08998 * 109.46862 * 207.50754 * 14 12 11 41 41 H 1.09002 * 109.47153 * 59.99783 * 15 14 12 42 42 H 1.09001 * 109.46832 * 299.99974 * 15 14 12 43 43 H 0.96996 * 119.99606 * 0.02562 * 16 15 14 44 44 H 1.08004 * 120.39977 * 180.29764 * 19 18 17 45 45 H 1.09000 * 109.47089 * 124.98261 * 21 20 19 46 46 H 0.96696 * 113.99626 * 179.97438 * 22 21 20 47 47 H 1.48502 * 110.00135 * 300.00184 * 23 21 20 48 48 H 1.48499 * 110.00043 * 61.31737 * 23 21 20 49 49 H 1.07989 * 120.40398 * 180.02562 * 24 20 19 50 50 H 1.09007 * 113.61238 * 89.11652 * 26 12 11 51 51 H 1.08997 * 113.61790 * 219.92833 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2492 5 8 2.0140 -0.6845 1.1855 6 6 1.6522 -1.9722 1.3384 7 8 0.9515 -2.5097 0.5036 8 7 2.0680 -2.6657 2.4166 9 6 1.6748 -4.0671 2.5826 10 1 0.7610 -4.3180 2.0440 11 6 2.8234 -5.0616 2.3441 12 6 3.1510 -4.9209 3.8400 13 1 3.8472 -4.1119 4.0616 14 6 3.5412 -6.2405 4.5086 15 6 5.0462 -6.4667 4.3511 16 7 5.4199 -7.7300 4.9919 17 6 6.7388 -8.1495 4.9778 18 7 7.6497 -7.3991 4.3759 19 6 8.9197 -7.7683 4.3492 20 6 9.2898 -8.9608 4.9508 21 6 10.7259 -9.4173 4.9360 22 8 10.8354 -10.6206 4.1728 23 14 11.7898 -8.0954 4.1672 24 6 8.3105 -9.7242 5.5668 25 7 7.0593 -9.2949 5.5617 26 6 1.6761 -4.5380 4.0465 27 1 -0.3634 0.5139 0.8901 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 3.1300 1.4426 -0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 1.6766 -1.7489 -1.2493 34 1 1.6766 -0.2074 -2.1392 35 1 3.1299 -0.7208 -1.2495 36 1 2.6277 -2.2368 3.0828 37 1 3.6044 -4.6773 1.6880 38 1 2.4858 -6.0591 2.0629 39 1 2.9993 -7.0606 4.0377 40 1 3.2889 -6.1994 5.5682 41 1 5.5882 -5.6465 4.8220 42 1 5.2984 -6.5078 3.2915 43 1 4.7428 -8.2727 5.4254 44 1 9.6585 -7.1499 3.8611 45 1 11.0586 -9.6033 5.9572 46 1 11.7346 -10.9723 4.1201 47 1 11.3464 -7.8326 2.7745 48 1 11.7096 -6.8484 4.9696 49 1 8.5658 -10.6582 6.0450 50 1 1.0248 -5.3925 4.2309 51 1 1.5307 -3.7322 4.7660 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_16498396_12175864.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:04:21 Heat of formation + Delta-G solvation = -29.996983 kcal Electronic energy + Delta-G solvation = -30297.943418 eV Core-core repulsion = 26007.339819 eV Total energy + Delta-G solvation = -4290.603598 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 351.199 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -42.22054 -41.98513 -40.53495 -38.30609 -37.94468 -37.08881 -35.43709 -34.91959 -34.40608 -33.14843 -30.99951 -28.41874 -28.34913 -27.08819 -26.70964 -26.18518 -25.33767 -23.82725 -23.00546 -22.66265 -21.19513 -20.30231 -19.58511 -19.27140 -18.79460 -18.28501 -17.64017 -17.26060 -16.82354 -16.66193 -16.57039 -16.22548 -15.97702 -15.75780 -15.61617 -15.42816 -15.21221 -15.03764 -14.78028 -14.70141 -14.41102 -14.07930 -13.89274 -13.47934 -13.39729 -13.20152 -13.18561 -12.97072 -12.91916 -12.77511 -12.64445 -12.41170 -12.37275 -12.35476 -12.05769 -11.94315 -11.85550 -11.47970 -11.44618 -11.34252 -11.18050 -11.13065 -10.61241 -10.21434 -10.05092 -9.21639 -4.96163 -0.14032 -0.00925 1.08890 1.30745 1.65137 1.67195 1.72338 1.96168 2.62619 2.93125 3.07051 3.40862 3.44605 3.45978 3.46891 3.61468 3.69245 3.73981 3.81108 3.83877 3.87619 3.89488 4.09445 4.10386 4.25247 4.41327 4.45824 4.52811 4.53411 4.56464 4.60615 4.64189 4.71484 4.75672 4.77852 4.79329 4.82854 4.85296 4.86510 4.95174 5.04379 5.06252 5.12871 5.19711 5.21923 5.22158 5.29278 5.47193 5.59844 5.61451 5.88263 6.28777 6.33241 6.95893 7.12567 7.28085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.127 3.873 3 C -0.138 4.138 4 C -0.180 4.180 5 O -0.370 6.370 6 C 0.645 3.355 7 O -0.594 6.594 8 N -0.683 5.683 9 C 0.127 3.873 10 H 0.090 0.910 11 C -0.149 4.149 12 C -0.097 4.097 13 H 0.098 0.902 14 C -0.111 4.111 15 C 0.140 3.860 16 N -0.690 5.690 17 C 0.548 3.452 18 N -0.583 5.583 19 C 0.175 3.825 20 C -0.254 4.254 21 C -0.053 4.053 22 O -0.566 6.566 23 Si 0.770 3.230 24 C 0.219 3.781 25 N -0.583 5.583 26 C -0.124 4.124 27 H 0.062 0.938 28 H 0.087 0.913 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.099 0.901 32 H 0.070 0.930 33 H 0.062 0.938 34 H 0.088 0.912 35 H 0.060 0.940 36 H 0.416 0.584 37 H 0.058 0.942 38 H 0.099 0.901 39 H 0.080 0.920 40 H 0.086 0.914 41 H 0.060 0.940 42 H 0.054 0.946 43 H 0.422 0.578 44 H 0.160 0.840 45 H 0.104 0.896 46 H 0.406 0.594 47 H -0.297 1.297 48 H -0.287 1.287 49 H 0.197 0.803 50 H 0.113 0.887 51 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.409 0.112 3.737 5.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.091 3.909 3 C -0.195 4.195 4 C -0.237 4.237 5 O -0.284 6.284 6 C 0.398 3.602 7 O -0.485 6.485 8 N -0.343 5.343 9 C 0.022 3.978 10 H 0.108 0.892 11 C -0.188 4.188 12 C -0.116 4.116 13 H 0.116 0.884 14 C -0.149 4.149 15 C 0.017 3.983 16 N -0.327 5.327 17 C 0.191 3.809 18 N -0.306 5.306 19 C 0.008 3.992 20 C -0.262 4.262 21 C -0.165 4.165 22 O -0.376 6.376 23 Si 0.676 3.324 24 C 0.051 3.949 25 N -0.305 5.305 26 C -0.162 4.162 27 H 0.081 0.919 28 H 0.106 0.894 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.118 0.882 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.106 0.894 35 H 0.079 0.921 36 H 0.253 0.747 37 H 0.077 0.923 38 H 0.118 0.882 39 H 0.099 0.901 40 H 0.104 0.896 41 H 0.078 0.922 42 H 0.072 0.928 43 H 0.260 0.740 44 H 0.177 0.823 45 H 0.122 0.878 46 H 0.257 0.743 47 H -0.225 1.225 48 H -0.214 1.214 49 H 0.213 0.787 50 H 0.131 0.869 51 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.386 1.322 2.765 3.884 hybrid contribution 0.326 -0.359 0.273 0.556 sum 2.712 0.963 3.038 4.185 Atomic orbital electron populations 1.22472 0.93934 1.03689 1.03593 1.22367 0.94550 0.92592 0.81430 1.21894 1.02417 0.90812 1.04328 1.22473 1.01562 1.02238 0.97465 1.86309 1.71530 1.23256 1.47337 1.18338 0.78594 0.80737 0.82486 1.90905 1.42341 1.71058 1.44148 1.44387 1.54871 1.11910 1.23083 1.21903 0.98482 0.78049 0.99337 0.89206 1.23580 0.98048 1.00020 0.97106 1.22463 0.97028 0.97522 0.94610 0.88421 1.21712 0.92693 0.97866 1.02631 1.21361 0.96347 0.83675 0.96956 1.44275 1.02913 1.24942 1.60581 1.19693 0.87975 0.85940 0.87286 1.67890 1.02387 1.36014 1.24295 1.22859 0.91807 0.93469 0.91046 1.21070 0.98910 0.98780 1.07445 1.24406 0.94518 0.96262 1.01272 1.86441 1.36591 1.40482 1.74080 0.94180 0.86692 0.75527 0.75953 1.23315 0.85296 0.97480 0.88803 1.68048 1.22398 1.15408 1.24666 1.23355 0.96515 1.02421 0.93944 0.91851 0.89386 0.91838 0.91255 0.88232 0.91088 0.91876 0.89368 0.92070 0.74685 0.92331 0.88214 0.90089 0.89580 0.92186 0.92767 0.73958 0.82311 0.87810 0.74270 1.22498 1.21432 0.78669 0.86901 0.89581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.72 8.37 71.98 0.60 -0.12 16 2 C 0.13 0.50 1.13 -10.79 -0.01 0.49 16 3 C -0.14 0.18 8.85 71.98 0.64 0.82 16 4 C -0.18 -0.80 8.37 71.98 0.60 -0.20 16 5 O -0.37 -2.43 9.94 -55.42 -0.55 -2.98 16 6 C 0.64 5.08 8.06 129.79 1.05 6.13 16 7 O -0.59 -7.92 11.48 19.79 0.23 -7.70 16 8 N -0.68 -0.92 5.27 -567.61 -2.99 -3.91 16 9 C 0.13 -0.08 4.32 45.52 0.20 0.12 16 10 H 0.09 0.30 7.47 -2.39 -0.02 0.28 16 11 C -0.15 0.29 7.43 31.12 0.23 0.52 16 12 C -0.10 0.56 3.53 -10.27 -0.04 0.52 16 13 H 0.10 -0.58 8.13 -2.39 -0.02 -0.60 16 14 C -0.11 0.65 5.16 30.59 0.16 0.81 16 15 C 0.14 0.00 5.64 86.38 0.49 0.49 16 16 N -0.69 -2.24 5.70 -351.03 -2.00 -4.24 16 17 C 0.55 5.06 8.42 261.49 2.20 7.27 16 18 N -0.58 -6.25 9.59 -197.98 -1.90 -8.15 16 19 C 0.17 1.42 9.92 84.71 0.84 2.26 16 20 C -0.25 -1.18 5.40 -19.69 -0.11 -1.29 16 21 C -0.05 0.15 2.82 71.24 0.20 0.35 16 22 O -0.57 1.42 12.82 -148.98 -1.91 -0.49 16 23 Si 0.77 -2.72 29.92 68.60 2.05 -0.67 16 24 C 0.22 1.11 10.99 84.71 0.93 2.04 16 25 N -0.58 -5.11 10.46 -197.99 -2.07 -7.19 16 26 C -0.12 0.79 7.39 31.12 0.23 1.02 16 27 H 0.06 0.20 8.14 -2.38 -0.02 0.18 16 28 H 0.09 0.04 8.14 -2.39 -0.02 0.02 16 29 H 0.06 0.60 5.88 -2.39 -0.01 0.58 16 30 H 0.07 -0.10 8.14 -2.39 -0.02 -0.12 16 31 H 0.10 -0.47 8.14 -2.39 -0.02 -0.49 16 32 H 0.07 -0.12 8.14 -2.39 -0.02 -0.14 16 33 H 0.06 0.63 5.88 -2.39 -0.01 0.61 16 34 H 0.09 0.07 8.14 -2.39 -0.02 0.05 16 35 H 0.06 0.24 8.14 -2.39 -0.02 0.22 16 36 H 0.42 -1.27 8.81 -92.70 -0.82 -2.09 16 37 H 0.06 0.09 8.14 -2.39 -0.02 0.07 16 38 H 0.10 -0.28 7.90 -2.39 -0.02 -0.30 16 39 H 0.08 -0.52 7.84 -2.39 -0.02 -0.54 16 40 H 0.09 -0.64 8.14 -2.39 -0.02 -0.66 16 41 H 0.06 0.10 8.14 -2.39 -0.02 0.08 16 42 H 0.05 0.17 8.14 -2.39 -0.02 0.15 16 43 H 0.42 -0.08 8.59 -92.71 -0.80 -0.88 16 44 H 0.16 0.94 5.04 -2.91 -0.01 0.93 16 45 H 0.10 -0.83 7.96 -2.39 -0.02 -0.85 16 46 H 0.41 -5.32 8.74 -74.06 -0.65 -5.97 16 47 H -0.30 -1.30 7.06 99.48 0.70 -0.60 16 48 H -0.29 -0.59 7.11 99.48 0.71 0.12 16 49 H 0.20 -0.21 8.06 -2.92 -0.02 -0.23 16 50 H 0.11 -0.93 8.10 -2.38 -0.02 -0.94 16 51 H 0.09 -0.63 8.14 -2.39 -0.02 -0.64 16 Total: 0.00 -23.66 411.25 -2.19 -25.85 By element: Atomic # 1 Polarization: -10.49 SS G_CDS: -1.26 Total: -11.76 kcal Atomic # 6 Polarization: 13.00 SS G_CDS: 8.21 Total: 21.21 kcal Atomic # 7 Polarization: -14.52 SS G_CDS: -8.96 Total: -23.48 kcal Atomic # 8 Polarization: -8.93 SS G_CDS: -2.23 Total: -11.17 kcal Atomic # 14 Polarization: -2.72 SS G_CDS: 2.05 Total: -0.67 kcal Total: -23.66 -2.19 -25.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16498396_12175864.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.144 kcal (2) G-P(sol) polarization free energy of solvation -23.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds