Wall clock time and date at job start Mon Mar 8 2021 06:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52999 * 109.46990 * 2 1 4 4 C 1.52993 * 109.46944 * 240.00249 * 2 1 3 5 5 O 1.45202 * 109.47229 * 119.99976 * 2 1 3 6 6 C 1.34638 * 116.99989 * 59.99994 * 5 2 1 7 7 O 1.21512 * 119.99622 * 359.97438 * 6 5 2 8 8 N 1.34768 * 120.00124 * 179.97438 * 6 5 2 9 9 C 1.46498 * 120.00221 * 179.97438 * 8 6 5 10 10 H 1.08996 * 112.91095 * 336.25433 * 9 8 6 11 11 C 1.53789 * 113.61404 * 107.50091 * 9 8 6 12 12 C 1.53787 * 87.07916 * 89.11935 * 11 9 8 13 13 H 1.09003 * 113.68991 * 270.87343 * 12 11 9 14 14 C 1.52997 * 113.61418 * 139.98375 * 12 11 9 15 15 C 1.53000 * 109.47060 * 87.50236 * 14 12 11 16 16 N 1.46499 * 109.46840 * 180.02562 * 15 14 12 17 17 C 1.39147 * 120.00185 * 179.97438 * 16 15 14 18 18 N 1.32339 * 119.71327 * 0.02562 * 17 16 15 19 19 C 1.32012 * 121.64453 * 179.97438 * 18 17 16 20 20 C 1.37985 * 120.90102 * 359.97438 * 19 18 17 21 21 C 1.50702 * 120.32693 * 179.97438 * 20 19 18 22 22 O 1.42898 * 109.46925 * 119.99482 * 21 20 19 23 23 Si 1.86302 * 109.46813 * 359.97438 * 21 20 19 24 24 C 1.38903 * 119.34645 * 359.97438 * 20 19 18 25 25 C 1.38447 * 118.48573 * 359.75028 * 24 20 19 26 26 F 1.35097 * 120.47249 * 180.27325 * 25 24 20 27 27 C 1.53780 * 87.08169 * 25.42984 * 12 11 9 28 28 H 1.09004 * 109.46963 * 299.99894 * 1 2 3 29 29 H 1.08996 * 109.47070 * 59.99844 * 1 2 3 30 30 H 1.08993 * 109.46893 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47308 * 179.97438 * 3 2 1 32 32 H 1.09004 * 109.47397 * 300.00374 * 3 2 1 33 33 H 1.09004 * 109.47181 * 60.00239 * 3 2 1 34 34 H 1.09002 * 109.46939 * 299.99639 * 4 2 1 35 35 H 1.08998 * 109.47587 * 59.99590 * 4 2 1 36 36 H 1.09002 * 109.47523 * 179.97438 * 4 2 1 37 37 H 0.97002 * 120.00057 * 359.97438 * 8 6 5 38 38 H 1.08998 * 113.61490 * 334.57116 * 11 9 8 39 39 H 1.08992 * 113.61318 * 203.66712 * 11 9 8 40 40 H 1.09002 * 109.47153 * 327.49917 * 14 12 11 41 41 H 1.09001 * 109.46832 * 207.50108 * 14 12 11 42 42 H 1.09001 * 109.47194 * 299.99650 * 15 14 12 43 43 H 1.08992 * 109.47399 * 59.99823 * 15 14 12 44 44 H 0.97005 * 120.00448 * 359.97438 * 16 15 14 45 45 H 1.08000 * 119.54982 * 179.97438 * 19 18 17 46 46 H 1.08998 * 109.47011 * 240.00029 * 21 20 19 47 47 H 0.96708 * 113.99866 * 179.97438 * 22 21 20 48 48 H 1.48500 * 110.00269 * 298.67687 * 23 21 20 49 49 H 1.48500 * 110.00361 * 60.00071 * 23 21 20 50 50 H 1.07998 * 120.75523 * 180.02562 * 24 20 19 51 51 H 1.09004 * 113.61169 * 89.11732 * 27 12 11 52 52 H 1.09001 * 113.61588 * 219.93069 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0141 -0.6845 1.1856 6 6 1.6524 -1.9723 1.3384 7 8 0.9510 -2.5094 0.5040 8 7 2.0682 -2.6657 2.4166 9 6 1.6741 -4.0668 2.5831 10 1 0.7599 -4.3173 2.0450 11 6 2.8218 -5.0621 2.3442 12 6 3.1504 -4.9213 3.8399 13 1 3.8473 -4.1128 4.0610 14 6 3.5400 -6.2411 4.5087 15 6 5.0448 -6.4683 4.3504 16 7 5.4177 -7.7323 4.9903 17 6 6.7433 -8.1551 4.9754 18 7 7.6626 -7.4107 4.3820 19 6 8.9310 -7.7749 4.3457 20 6 9.3469 -8.9537 4.9301 21 6 10.7980 -9.3571 4.8804 22 8 11.3038 -9.4810 6.2111 23 14 11.7719 -8.0603 3.9634 24 6 8.4147 -9.7648 5.5646 25 6 7.0927 -9.3547 5.5922 26 9 6.1537 -10.1098 6.2032 27 6 1.6758 -4.5374 4.0472 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 3.1300 1.4426 0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 -1.7489 -1.2492 35 1 1.6766 -0.2074 -2.1392 36 1 3.1300 -0.7208 -1.2496 37 1 2.6284 -2.2370 3.0824 38 1 3.6028 -4.6786 1.6876 39 1 2.4835 -6.0595 2.0635 40 1 2.9972 -7.0609 4.0383 41 1 3.2883 -6.1995 5.5684 42 1 5.2964 -6.5098 3.2906 43 1 5.5875 -5.6485 4.8208 44 1 4.7405 -8.2745 5.4244 45 1 9.6530 -7.1415 3.8518 46 1 10.8919 -10.3132 4.3654 47 1 12.2347 -9.7392 6.2556 48 1 11.2764 -7.9449 2.5683 49 1 11.6521 -6.7516 4.6549 50 1 8.7153 -10.6919 6.0299 51 1 1.0241 -5.3914 4.2321 52 1 1.5314 -3.7313 4.7665 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_16498396_17656566.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:04:37 Heat of formation + Delta-G solvation = -91.097739 kcal Electronic energy + Delta-G solvation = -32695.725173 eV Core-core repulsion = 27998.443983 eV Total energy + Delta-G solvation = -4697.281191 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 368.194 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -50.06531 -41.99254 -41.52213 -40.52596 -38.29640 -37.93210 -36.99016 -35.43449 -34.40941 -33.49141 -32.60412 -30.60171 -28.41674 -28.34776 -26.97359 -26.69979 -25.94241 -24.76985 -23.64258 -22.82658 -22.62932 -21.19470 -20.28707 -19.50994 -19.23937 -18.62652 -18.29943 -18.08204 -17.63941 -17.26142 -17.11981 -16.74560 -16.54441 -16.21734 -16.15124 -15.69471 -15.50618 -15.43329 -15.15261 -15.01763 -14.97228 -14.61889 -14.42163 -14.41104 -14.04525 -13.88926 -13.82797 -13.47315 -13.39584 -13.19756 -12.96979 -12.91732 -12.76424 -12.66450 -12.55392 -12.37782 -12.37037 -12.10789 -11.93077 -11.48463 -11.44961 -11.35853 -11.18242 -11.14385 -10.90969 -10.85711 -10.25403 -10.21659 -8.87594 -4.93306 -0.26913 -0.01170 1.08822 1.30891 1.67167 1.67565 1.88011 1.98333 2.36935 2.89202 3.06020 3.07785 3.32087 3.45589 3.46434 3.59324 3.69399 3.72676 3.74122 3.80743 3.83244 3.89672 4.03293 4.11750 4.25907 4.30297 4.37785 4.41287 4.48143 4.53227 4.56665 4.59505 4.62916 4.71663 4.75986 4.77233 4.79587 4.82983 4.85503 4.86336 4.86900 4.95447 5.04367 5.07972 5.17425 5.19819 5.22312 5.26455 5.29740 5.47031 5.59617 5.83358 6.06795 6.33022 6.82042 6.94028 7.27910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.127 3.873 3 C -0.138 4.138 4 C -0.180 4.180 5 O -0.370 6.370 6 C 0.645 3.355 7 O -0.594 6.594 8 N -0.683 5.683 9 C 0.127 3.873 10 H 0.090 0.910 11 C -0.148 4.148 12 C -0.098 4.098 13 H 0.097 0.903 14 C -0.113 4.113 15 C 0.136 3.864 16 N -0.713 5.713 17 C 0.377 3.623 18 N -0.531 5.531 19 C 0.126 3.874 20 C -0.171 4.171 21 C -0.064 4.064 22 O -0.565 6.565 23 Si 0.772 3.228 24 C -0.037 4.037 25 C -0.029 4.029 26 F -0.134 7.134 27 C -0.125 4.125 28 H 0.062 0.938 29 H 0.087 0.913 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.099 0.901 33 H 0.070 0.930 34 H 0.062 0.938 35 H 0.088 0.912 36 H 0.060 0.940 37 H 0.416 0.584 38 H 0.059 0.941 39 H 0.100 0.900 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.055 0.945 43 H 0.057 0.943 44 H 0.419 0.581 45 H 0.156 0.844 46 H 0.101 0.899 47 H 0.406 0.594 48 H -0.284 1.284 49 H -0.294 1.294 50 H 0.167 0.833 51 H 0.112 0.888 52 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.082 -0.635 1.242 4.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.090 3.910 3 C -0.195 4.195 4 C -0.237 4.237 5 O -0.284 6.284 6 C 0.399 3.601 7 O -0.484 6.484 8 N -0.343 5.343 9 C 0.023 3.977 10 H 0.108 0.892 11 C -0.186 4.186 12 C -0.117 4.117 13 H 0.115 0.885 14 C -0.150 4.150 15 C 0.013 3.987 16 N -0.347 5.347 17 C 0.137 3.863 18 N -0.249 5.249 19 C -0.030 4.030 20 C -0.177 4.177 21 C -0.175 4.175 22 O -0.375 6.375 23 Si 0.678 3.322 24 C -0.063 4.063 25 C -0.056 4.056 26 F -0.113 7.113 27 C -0.163 4.163 28 H 0.081 0.919 29 H 0.106 0.894 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.118 0.882 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.106 0.894 36 H 0.080 0.920 37 H 0.253 0.747 38 H 0.077 0.923 39 H 0.118 0.882 40 H 0.099 0.901 41 H 0.101 0.899 42 H 0.074 0.926 43 H 0.075 0.925 44 H 0.257 0.743 45 H 0.173 0.827 46 H 0.119 0.881 47 H 0.257 0.743 48 H -0.211 1.211 49 H -0.222 1.222 50 H 0.184 0.816 51 H 0.130 0.870 52 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 2.738 1.047 0.040 2.932 hybrid contribution -0.526 -1.104 0.821 1.473 sum 2.212 -0.056 0.861 2.374 Atomic orbital electron populations 1.22473 0.93944 1.03688 1.03586 1.22370 0.94545 0.92595 0.81441 1.21894 1.02424 0.90818 1.04321 1.22471 1.01573 1.02233 0.97442 1.86312 1.71540 1.23247 1.47346 1.18331 0.78591 0.80736 0.82473 1.90903 1.42296 1.71074 1.44168 1.44385 1.54830 1.11943 1.23104 1.21899 0.98512 0.78077 0.99259 0.89188 1.23569 0.98027 1.00002 0.97026 1.22463 0.96961 0.97528 0.94703 0.88511 1.21718 0.93069 0.97844 1.02414 1.21324 0.96105 0.84191 0.97099 1.44652 1.03613 1.25176 1.61295 1.18608 0.87859 0.88429 0.91373 1.67262 1.01972 1.33328 1.22360 1.22331 0.91483 0.93608 0.95610 1.20274 0.96760 0.96462 1.04179 1.24595 0.92325 1.09865 0.90680 1.86436 1.33351 1.92910 1.24831 0.94187 0.87603 0.75450 0.74960 1.21494 0.89362 1.00613 0.94818 1.18105 0.88097 0.93266 1.06130 1.91478 1.63679 1.74885 1.81245 1.23358 0.96584 1.02383 0.94003 0.91878 0.89376 0.91834 0.91247 0.88214 0.91120 0.91869 0.89359 0.92049 0.74705 0.92256 0.88177 0.90140 0.89890 0.92628 0.92457 0.74268 0.82722 0.88109 0.74279 1.21093 1.22211 0.81581 0.86956 0.89670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.71 8.37 71.98 0.60 -0.11 16 2 C 0.13 0.49 1.13 -10.79 -0.01 0.48 16 3 C -0.14 0.19 8.85 71.98 0.64 0.82 16 4 C -0.18 -0.77 8.37 71.98 0.60 -0.17 16 5 O -0.37 -2.42 9.94 -55.48 -0.55 -2.97 16 6 C 0.65 5.05 8.06 129.79 1.05 6.10 16 7 O -0.59 -7.86 11.48 19.80 0.23 -7.63 16 8 N -0.68 -0.94 5.27 -567.62 -2.99 -3.93 16 9 C 0.13 -0.08 4.32 45.52 0.20 0.12 16 10 H 0.09 0.29 7.47 -2.39 -0.02 0.28 16 11 C -0.15 0.31 7.43 31.13 0.23 0.54 16 12 C -0.10 0.54 3.53 -10.27 -0.04 0.50 16 13 H 0.10 -0.54 8.13 -2.39 -0.02 -0.56 16 14 C -0.11 0.64 5.17 30.59 0.16 0.79 16 15 C 0.14 -0.02 5.69 86.38 0.49 0.47 16 16 N -0.71 -1.61 5.71 -344.82 -1.97 -3.58 16 17 C 0.38 2.72 7.49 133.08 1.00 3.72 16 18 N -0.53 -4.92 9.57 -193.03 -1.85 -6.76 16 19 C 0.13 0.90 9.84 84.61 0.83 1.73 16 20 C -0.17 -0.74 5.43 -19.76 -0.11 -0.85 16 21 C -0.06 0.15 2.83 71.24 0.20 0.35 16 22 O -0.57 1.22 12.75 -148.98 -1.90 -0.68 16 23 Si 0.77 -2.80 29.82 68.60 2.05 -0.75 16 24 C -0.04 -0.17 9.75 22.48 0.22 0.05 16 25 C -0.03 -0.19 7.35 22.59 0.17 -0.03 16 26 F -0.13 -0.83 16.65 44.97 0.75 -0.08 16 27 C -0.13 0.76 7.39 31.12 0.23 0.99 16 28 H 0.06 0.20 8.14 -2.39 -0.02 0.18 16 29 H 0.09 0.03 8.14 -2.39 -0.02 0.01 16 30 H 0.06 0.59 5.88 -2.39 -0.01 0.58 16 31 H 0.07 -0.10 8.14 -2.39 -0.02 -0.12 16 32 H 0.10 -0.47 8.14 -2.39 -0.02 -0.49 16 33 H 0.07 -0.12 8.14 -2.39 -0.02 -0.14 16 34 H 0.06 0.62 5.88 -2.39 -0.01 0.60 16 35 H 0.09 0.05 8.14 -2.39 -0.02 0.04 16 36 H 0.06 0.23 8.14 -2.39 -0.02 0.21 16 37 H 0.42 -1.22 8.81 -92.71 -0.82 -2.03 16 38 H 0.06 0.07 8.14 -2.39 -0.02 0.05 16 39 H 0.10 -0.30 7.90 -2.39 -0.02 -0.32 16 40 H 0.08 -0.51 7.84 -2.39 -0.02 -0.53 16 41 H 0.08 -0.57 8.14 -2.39 -0.02 -0.58 16 42 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 43 H 0.06 0.11 8.14 -2.39 -0.02 0.09 16 44 H 0.42 -0.42 7.94 -92.70 -0.74 -1.15 16 45 H 0.16 0.81 4.88 -2.91 -0.01 0.79 16 46 H 0.10 -0.71 7.96 -2.39 -0.02 -0.72 16 47 H 0.41 -5.18 8.74 -74.05 -0.65 -5.82 16 48 H -0.28 -0.47 7.11 99.48 0.71 0.24 16 49 H -0.29 -1.21 7.11 99.48 0.71 -0.51 16 50 H 0.17 0.12 8.06 -2.91 -0.02 0.09 16 51 H 0.11 -0.89 8.10 -2.38 -0.02 -0.91 16 52 H 0.08 -0.59 8.14 -2.39 -0.02 -0.61 16 Total: 0.00 -21.14 421.68 -0.98 -22.12 By element: Atomic # 1 Polarization: -10.04 SS G_CDS: -1.20 Total: -11.24 kcal Atomic # 6 Polarization: 9.06 SS G_CDS: 6.46 Total: 15.52 kcal Atomic # 7 Polarization: -7.47 SS G_CDS: -6.80 Total: -14.28 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: -2.22 Total: -11.28 kcal Atomic # 9 Polarization: -0.83 SS G_CDS: 0.75 Total: -0.08 kcal Atomic # 14 Polarization: -2.80 SS G_CDS: 2.05 Total: -0.75 kcal Total: -21.14 -0.98 -22.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16498396_17656566.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.981 kcal (2) G-P(sol) polarization free energy of solvation -21.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds