Wall clock time and date at job start Mon Mar 8 2021 06:19:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.47079 * 2 1 4 4 C 1.53005 * 109.47051 * 240.00207 * 2 1 3 5 5 O 1.45197 * 109.47405 * 120.00043 * 2 1 3 6 6 C 1.34642 * 116.99794 * 59.99675 * 5 2 1 7 7 O 1.21502 * 120.00188 * 0.02562 * 6 5 2 8 8 N 1.34774 * 119.99802 * 179.97438 * 6 5 2 9 9 C 1.46494 * 120.00035 * 180.02562 * 8 6 5 10 10 C 1.53006 * 109.47377 * 180.02562 * 9 8 6 11 11 F 1.39898 * 112.84634 * 316.19380 * 10 9 8 12 12 C 1.53775 * 113.61454 * 87.50087 * 10 9 8 13 13 C 1.53784 * 87.07970 * 139.98357 * 12 10 9 14 14 H 1.08997 * 113.69248 * 89.13032 * 13 12 10 15 15 C 1.53001 * 113.61224 * 220.02071 * 13 12 10 16 16 N 1.46505 * 109.47201 * 272.49390 * 15 13 12 17 17 C 1.38993 * 120.00282 * 180.02562 * 16 15 13 18 18 N 1.32397 * 119.70858 * 179.97438 * 17 16 15 19 19 C 1.31977 * 121.62351 * 179.97438 * 18 17 16 20 20 C 1.38018 * 120.85481 * 359.97438 * 19 18 17 21 21 C 1.50707 * 120.33108 * 180.02562 * 20 19 18 22 22 O 1.42902 * 109.46836 * 245.00145 * 21 20 19 23 23 Si 1.86293 * 109.47268 * 5.00174 * 21 20 19 24 24 C 1.38880 * 119.33470 * 0.02562 * 20 19 18 25 25 C 1.38305 * 118.50194 * 359.97438 * 24 20 19 26 26 C 1.53776 * 87.08138 * 334.56677 * 13 12 10 27 27 H 1.08993 * 109.46765 * 299.99781 * 1 2 3 28 28 H 1.08991 * 109.47167 * 59.99954 * 1 2 3 29 29 H 1.08999 * 109.47012 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46750 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.46894 * 300.00274 * 3 2 1 32 32 H 1.09003 * 109.46913 * 59.99909 * 3 2 1 33 33 H 1.08999 * 109.46900 * 299.99686 * 4 2 1 34 34 H 1.08998 * 109.46900 * 59.99870 * 4 2 1 35 35 H 1.08997 * 109.46876 * 179.97438 * 4 2 1 36 36 H 0.97006 * 119.99893 * 0.02562 * 8 6 5 37 37 H 1.09002 * 109.47090 * 60.00184 * 9 8 6 38 38 H 1.09000 * 109.47289 * 300.00084 * 9 8 6 39 39 H 1.08997 * 113.61562 * 25.43537 * 12 10 9 40 40 H 1.09001 * 113.62035 * 254.53140 * 12 10 9 41 41 H 1.08998 * 109.46925 * 152.49991 * 15 13 12 42 42 H 1.08993 * 109.47634 * 32.49603 * 15 13 12 43 43 H 0.97001 * 119.99758 * 0.02562 * 16 15 13 44 44 H 1.08002 * 119.56941 * 180.02562 * 19 18 17 45 45 H 1.08997 * 109.47204 * 125.00189 * 21 20 19 46 46 H 0.96695 * 113.99903 * 179.97438 * 22 21 20 47 47 H 1.48504 * 109.99889 * 300.00032 * 23 21 20 48 48 H 1.48501 * 110.00208 * 61.31594 * 23 21 20 49 49 H 1.07998 * 120.75276 * 180.24919 * 24 20 19 50 50 H 1.07999 * 120.44559 * 179.97438 * 25 24 20 51 51 H 1.09004 * 113.61660 * 139.98148 * 26 13 12 52 52 H 1.09004 * 113.62001 * 270.88294 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0141 -0.6845 1.1855 6 6 1.6523 -1.9723 1.3383 7 8 0.9516 -2.5097 0.5036 8 7 2.0681 -2.6657 2.4166 9 6 1.6750 -4.0671 2.5825 10 6 2.2750 -4.6151 3.8790 11 9 3.6108 -4.2408 4.0600 12 6 1.3931 -4.3753 5.1156 13 6 1.7836 -5.7912 5.5712 14 1 2.6894 -5.8223 6.1767 15 6 0.6264 -6.5760 6.1926 16 7 0.5548 -6.2868 7.6270 17 6 -0.4236 -6.8889 8.4094 18 7 -0.4827 -6.6237 9.7052 19 6 -1.3961 -7.1736 10.4832 20 6 -2.3291 -8.0508 9.9685 21 6 -3.3672 -8.6715 10.8675 22 8 -3.1581 -10.0837 10.9324 23 14 -3.2243 -7.9434 12.5763 24 6 -2.3016 -8.3557 8.6138 25 6 -1.3329 -7.7641 7.8237 26 6 2.0227 -6.1177 4.0877 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 1.6767 -1.7489 -1.2493 34 1 1.6767 -0.2074 -2.1392 35 1 3.1300 -0.7208 -1.2495 36 1 2.6278 -2.2368 3.0827 37 1 2.0414 -4.6498 1.7374 38 1 0.5881 -4.1367 2.6279 39 1 0.3337 -4.2683 4.8823 40 1 1.7647 -3.5877 5.7710 41 1 0.7907 -7.6434 6.0450 42 1 -0.3088 -6.2830 5.7158 43 1 1.1902 -5.6751 8.0308 44 1 -1.4141 -6.9335 11.5360 45 1 -4.3612 -8.4694 10.4684 46 1 -3.7914 -10.5496 11.4953 47 1 -1.8735 -8.2123 13.1316 48 1 -3.4711 -6.4799 12.5271 49 1 -3.0232 -9.0360 8.1862 50 1 -1.2826 -7.9792 6.7665 51 1 2.9028 -6.7366 3.9131 52 1 1.1356 -6.4871 3.5732 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_16499942_13915762.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:19:31 Heat of formation + Delta-G solvation = -90.007821 kcal Electronic energy + Delta-G solvation = -32778.083478 eV Core-core repulsion = 28080.849550 eV Total energy + Delta-G solvation = -4697.233928 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 368.194 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -48.90856 -41.87029 -41.49483 -39.99145 -38.50546 -37.89488 -36.56508 -35.80153 -34.85913 -33.62495 -31.99712 -29.97443 -28.40541 -28.34455 -27.71317 -27.03822 -25.70481 -24.98218 -23.57672 -22.57814 -22.08785 -21.27868 -20.68281 -19.37997 -18.73572 -18.45775 -18.13437 -17.82846 -17.46428 -17.09214 -16.72109 -16.59061 -16.47048 -16.36871 -15.88540 -15.73480 -15.51658 -15.48461 -15.30223 -15.06674 -14.78765 -14.52009 -14.44466 -14.21979 -14.10058 -13.88709 -13.69346 -13.60996 -13.42096 -13.38919 -13.13863 -12.95960 -12.91493 -12.55752 -12.47675 -12.40125 -12.25460 -12.09888 -12.03045 -11.53271 -11.45174 -11.37016 -11.20612 -11.13409 -10.83705 -10.70168 -10.36639 -10.18196 -8.78160 -4.96179 0.07509 0.30986 1.04951 1.32801 1.64056 1.65729 1.97639 2.01811 2.69315 2.92503 3.06586 3.16916 3.19438 3.37753 3.46396 3.51227 3.52499 3.69803 3.75299 3.78813 3.90199 3.94568 4.01468 4.07402 4.19879 4.30103 4.33644 4.41443 4.45675 4.53900 4.57866 4.58424 4.63115 4.66467 4.69415 4.72305 4.72739 4.79187 4.81296 4.83614 4.86592 4.91702 4.96180 5.01529 5.15221 5.19330 5.23269 5.28710 5.32092 5.42235 5.49893 5.94563 6.22573 6.42219 6.95464 7.02208 7.21335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.126 3.874 3 C -0.138 4.138 4 C -0.180 4.180 5 O -0.371 6.371 6 C 0.646 3.354 7 O -0.590 6.590 8 N -0.704 5.704 9 C 0.130 3.870 10 C 0.078 3.922 11 F -0.198 7.198 12 C -0.145 4.145 13 C -0.114 4.114 14 H 0.098 0.902 15 C 0.138 3.862 16 N -0.720 5.720 17 C 0.391 3.609 18 N -0.572 5.572 19 C 0.125 3.875 20 C -0.204 4.204 21 C -0.058 4.058 22 O -0.565 6.565 23 Si 0.766 3.234 24 C -0.009 4.009 25 C -0.234 4.234 26 C -0.128 4.128 27 H 0.061 0.939 28 H 0.088 0.912 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.100 0.900 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.088 0.912 35 H 0.060 0.940 36 H 0.414 0.586 37 H 0.079 0.921 38 H 0.102 0.898 39 H 0.117 0.883 40 H 0.079 0.921 41 H 0.077 0.923 42 H 0.083 0.917 43 H 0.405 0.595 44 H 0.138 0.862 45 H 0.097 0.903 46 H 0.403 0.597 47 H -0.300 1.300 48 H -0.291 1.291 49 H 0.159 0.841 50 H 0.162 0.838 51 H 0.091 0.909 52 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.388 -1.603 -0.614 4.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.090 3.910 3 C -0.195 4.195 4 C -0.237 4.237 5 O -0.286 6.286 6 C 0.399 3.601 7 O -0.480 6.480 8 N -0.364 5.364 9 C 0.007 3.993 10 C 0.060 3.940 11 F -0.179 7.179 12 C -0.183 4.183 13 C -0.132 4.132 14 H 0.116 0.884 15 C 0.015 3.985 16 N -0.352 5.352 17 C 0.155 3.845 18 N -0.290 5.290 19 C -0.032 4.032 20 C -0.209 4.209 21 C -0.169 4.169 22 O -0.375 6.375 23 Si 0.674 3.326 24 C -0.035 4.035 25 C -0.259 4.259 26 C -0.167 4.167 27 H 0.080 0.920 28 H 0.107 0.893 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.118 0.882 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.107 0.893 35 H 0.079 0.921 36 H 0.251 0.749 37 H 0.098 0.902 38 H 0.121 0.879 39 H 0.135 0.865 40 H 0.098 0.902 41 H 0.096 0.904 42 H 0.101 0.899 43 H 0.240 0.760 44 H 0.155 0.845 45 H 0.115 0.885 46 H 0.254 0.746 47 H -0.229 1.229 48 H -0.219 1.219 49 H 0.177 0.823 50 H 0.179 0.821 51 H 0.110 0.890 52 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -3.197 -0.555 -0.837 3.350 hybrid contribution 0.569 0.166 -0.175 0.618 sum -2.627 -0.388 -1.012 2.842 Atomic orbital electron populations 1.22470 0.93777 1.03817 1.03583 1.22395 0.94659 0.92545 0.81420 1.21901 1.02408 0.90931 1.04301 1.22478 1.01578 1.02313 0.97368 1.86320 1.71545 1.23264 1.47423 1.18242 0.78726 0.80848 0.82241 1.90908 1.42167 1.70954 1.44008 1.44570 1.55526 1.12698 1.23611 1.21939 1.01498 0.78917 0.96920 1.22196 0.77853 0.98584 0.95388 1.92861 1.36124 1.92610 1.96293 1.23810 1.01230 0.97997 0.95224 1.22639 0.98728 0.95367 0.96502 0.88372 1.21566 0.98741 1.00276 0.77936 1.44620 1.32953 1.49658 1.07969 1.18689 0.88630 0.89704 0.87522 1.67050 1.26547 1.29952 1.05446 1.22106 0.89818 0.93212 0.98020 1.20351 1.01033 1.03166 0.96391 1.24474 0.98617 0.86095 1.07689 1.86441 1.59997 1.17452 1.73617 0.94525 0.82078 0.78050 0.77979 1.21514 0.95861 0.94281 0.91796 1.21766 0.98696 1.02611 1.02789 1.23573 1.05511 0.92719 0.94867 0.91952 0.89347 0.91586 0.91319 0.88156 0.91210 0.91657 0.89298 0.92099 0.74943 0.90226 0.87948 0.86477 0.90203 0.90443 0.89870 0.75974 0.84545 0.88510 0.74582 1.22866 1.21894 0.82337 0.82063 0.88987 0.85109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.51 8.37 71.98 0.60 0.10 16 2 C 0.13 0.40 1.13 -10.79 -0.01 0.38 16 3 C -0.14 0.23 8.85 71.98 0.64 0.87 16 4 C -0.18 -0.60 8.37 71.98 0.60 0.01 16 5 O -0.37 -2.29 9.94 -55.51 -0.55 -2.84 16 6 C 0.65 4.38 8.06 129.79 1.05 5.43 16 7 O -0.59 -6.52 11.88 19.83 0.24 -6.28 16 8 N -0.70 -0.81 5.45 -590.86 -3.22 -4.03 16 9 C 0.13 -0.39 5.42 86.38 0.47 0.08 16 10 C 0.08 -0.41 1.74 -10.27 -0.02 -0.43 16 11 F -0.20 -0.11 16.58 44.97 0.75 0.64 16 12 C -0.15 1.05 7.08 31.12 0.22 1.27 16 13 C -0.11 0.89 3.73 -10.27 -0.04 0.85 16 14 H 0.10 -0.56 8.14 -2.39 -0.02 -0.58 16 15 C 0.14 -0.97 4.73 86.38 0.41 -0.57 16 16 N -0.72 0.23 5.73 -345.08 -1.98 -1.74 16 17 C 0.39 2.18 7.65 133.07 1.02 3.20 16 18 N -0.57 -6.28 10.39 -193.27 -2.01 -8.29 16 19 C 0.12 1.23 9.84 84.62 0.83 2.06 16 20 C -0.20 -1.15 5.39 -19.76 -0.11 -1.26 16 21 C -0.06 0.03 2.81 71.24 0.20 0.23 16 22 O -0.57 0.35 12.82 -148.98 -1.91 -1.56 16 23 Si 0.77 -0.68 29.88 68.60 2.05 1.37 16 24 C -0.01 -0.02 9.84 22.44 0.22 0.20 16 25 C -0.23 -0.43 9.33 22.50 0.21 -0.22 16 26 C -0.13 1.17 7.10 31.12 0.22 1.39 16 27 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 28 H 0.09 -0.06 8.14 -2.39 -0.02 -0.08 16 29 H 0.07 0.50 5.88 -2.39 -0.01 0.49 16 30 H 0.07 -0.11 8.14 -2.39 -0.02 -0.12 16 31 H 0.10 -0.52 8.14 -2.39 -0.02 -0.54 16 32 H 0.07 -0.13 8.14 -2.39 -0.02 -0.14 16 33 H 0.06 0.54 5.88 -2.39 -0.01 0.52 16 34 H 0.09 -0.03 8.14 -2.39 -0.02 -0.05 16 35 H 0.06 0.18 8.14 -2.39 -0.02 0.16 16 36 H 0.41 -0.33 8.14 -92.70 -0.75 -1.08 16 37 H 0.08 -0.13 8.14 -2.39 -0.02 -0.15 16 38 H 0.10 -0.49 7.84 -2.39 -0.02 -0.51 16 39 H 0.12 -1.08 7.65 -2.39 -0.02 -1.10 16 40 H 0.08 -0.43 8.14 -2.39 -0.02 -0.45 16 41 H 0.08 -0.61 7.93 -2.39 -0.02 -0.63 16 42 H 0.08 -0.78 7.63 -2.39 -0.02 -0.79 16 43 H 0.40 -0.02 8.60 -92.71 -0.80 -0.82 16 44 H 0.14 1.29 4.87 -2.91 -0.01 1.28 16 45 H 0.10 -0.52 7.96 -2.39 -0.02 -0.54 16 46 H 0.40 -4.52 8.74 -74.06 -0.65 -5.17 16 47 H -0.30 -2.22 7.05 99.48 0.70 -1.51 16 48 H -0.29 -1.49 7.11 99.48 0.71 -0.78 16 49 H 0.16 -0.35 8.06 -2.91 -0.02 -0.38 16 50 H 0.16 -0.72 6.71 -2.91 -0.02 -0.74 16 51 H 0.09 -0.75 8.14 -2.38 -0.02 -0.77 16 52 H 0.13 -1.73 8.06 -2.38 -0.02 -1.75 16 Total: 0.00 -23.95 419.77 -1.33 -25.28 By element: Atomic # 1 Polarization: -14.92 SS G_CDS: -1.20 Total: -16.13 kcal Atomic # 6 Polarization: 7.08 SS G_CDS: 6.51 Total: 13.59 kcal Atomic # 7 Polarization: -6.86 SS G_CDS: -7.21 Total: -14.07 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: -2.23 Total: -10.68 kcal Atomic # 9 Polarization: -0.11 SS G_CDS: 0.75 Total: 0.64 kcal Atomic # 14 Polarization: -0.68 SS G_CDS: 2.05 Total: 1.37 kcal Total: -23.95 -1.33 -25.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16499942_13915762.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.732 kcal (2) G-P(sol) polarization free energy of solvation -23.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds