Wall clock time and date at job start Mon Mar 8 2021 06:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46994 * 2 1 4 4 C 1.52995 * 109.47517 * 239.99724 * 2 1 3 5 5 O 1.45199 * 109.46900 * 119.99536 * 2 1 3 6 6 C 1.34645 * 116.99860 * 60.00620 * 5 2 1 7 7 O 1.21510 * 119.99958 * 359.97438 * 6 5 2 8 8 N 1.34777 * 119.99593 * 179.97438 * 6 5 2 9 9 C 1.46508 * 119.99517 * 179.97438 * 8 6 5 10 10 C 1.52993 * 109.47076 * 180.02562 * 9 8 6 11 11 F 1.39899 * 112.85128 * 48.80557 * 10 9 8 12 12 C 1.53778 * 113.61724 * 180.02562 * 10 9 8 13 13 C 1.53780 * 87.08679 * 140.06457 * 12 10 9 14 14 H 1.08999 * 113.61503 * 89.19725 * 13 12 10 15 15 C 1.52992 * 113.61669 * 220.02242 * 13 12 10 16 16 N 1.46495 * 109.47351 * 183.47101 * 15 13 12 17 17 C 1.38609 * 120.00596 * 179.97438 * 16 15 13 18 18 N 1.29690 * 124.94391 * 359.97438 * 17 16 15 19 19 C 1.32125 * 116.86330 * 180.02562 * 18 17 16 20 20 C 1.33320 * 114.58105 * 359.97438 * 19 18 17 21 21 C 1.50701 * 125.95121 * 180.02562 * 20 19 18 22 22 O 1.42896 * 109.47417 * 64.99793 * 21 20 19 23 23 Si 1.86301 * 109.47149 * 184.99809 * 21 20 19 24 24 S 1.70965 * 124.95596 * 180.32853 * 17 16 15 25 25 C 1.53785 * 87.16866 * 334.61186 * 13 12 10 26 26 H 1.08991 * 109.47330 * 300.00083 * 1 2 3 27 27 H 1.09001 * 109.46761 * 60.00664 * 1 2 3 28 28 H 1.09003 * 109.46776 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47386 * 179.97438 * 3 2 1 30 30 H 1.08997 * 109.47060 * 299.99741 * 3 2 1 31 31 H 1.09001 * 109.47125 * 59.99841 * 3 2 1 32 32 H 1.09000 * 109.47098 * 300.00076 * 4 2 1 33 33 H 1.08997 * 109.46942 * 60.00011 * 4 2 1 34 34 H 1.08998 * 109.47464 * 179.97438 * 4 2 1 35 35 H 0.96995 * 120.00571 * 359.97438 * 8 6 5 36 36 H 1.08999 * 109.46738 * 60.00180 * 9 8 6 37 37 H 1.09005 * 109.47072 * 300.00083 * 9 8 6 38 38 H 1.09003 * 113.61149 * 25.51175 * 12 10 9 39 39 H 1.09000 * 113.61190 * 254.61748 * 12 10 9 40 40 H 1.09002 * 109.47122 * 63.46477 * 15 13 12 41 41 H 1.09008 * 109.46751 * 303.46939 * 15 13 12 42 42 H 0.97006 * 120.00108 * 359.97438 * 16 15 13 43 43 H 1.08001 * 122.70419 * 179.97438 * 19 18 17 44 44 H 1.09002 * 109.47060 * 304.99819 * 21 20 19 45 45 H 0.96708 * 114.00101 * 59.99427 * 22 21 20 46 46 H 1.48494 * 109.99914 * 58.67711 * 23 21 20 47 47 H 1.48493 * 110.00101 * 179.97438 * 23 21 20 48 48 H 1.09004 * 113.61505 * 139.93755 * 25 13 12 49 49 H 1.08999 * 113.61101 * 270.83849 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 8 2.0140 -0.6844 1.1856 6 6 1.6522 -1.9723 1.3384 7 8 0.9510 -2.5095 0.5041 8 7 2.0680 -2.6656 2.4168 9 6 1.6740 -4.0668 2.5833 10 6 2.2741 -4.6147 3.8796 11 9 2.0552 -3.7751 4.9770 12 6 1.9189 -6.0865 4.1491 13 6 3.3650 -6.2637 4.6412 14 1 3.4921 -6.0619 5.7048 15 6 4.0027 -7.5848 4.2068 16 7 5.3417 -7.6960 4.7905 17 6 6.1178 -8.8160 4.5365 18 7 5.7552 -9.8193 3.7991 19 6 6.6234 -10.8062 3.6649 20 6 7.7716 -10.6274 4.3185 21 6 8.9348 -11.5853 4.3419 22 8 9.4886 -11.6944 3.0291 23 14 10.2369 -10.9525 5.5145 24 16 7.6890 -9.0801 5.1565 25 6 3.7367 -5.0745 3.7398 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4426 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6768 -1.7489 -1.2491 33 1 1.6768 -0.2075 -2.1391 34 1 3.1301 -0.7209 -1.2494 35 1 2.6281 -2.2369 3.0826 36 1 2.0398 -4.6499 1.7382 37 1 0.5871 -4.1356 2.6290 38 1 1.6924 -6.6533 3.2460 39 1 1.1719 -6.2191 4.9317 40 1 4.0767 -7.6124 3.1196 41 1 3.3865 -8.4159 4.5501 42 1 5.6853 -6.9857 5.3549 43 1 6.4194 -11.6865 3.0735 44 1 8.5919 -12.5651 4.6742 45 1 9.8147 -10.8582 2.6690 46 1 9.6647 -10.8043 6.8767 47 1 11.3891 -11.8886 5.5471 48 1 4.4553 -4.3912 4.1926 49 1 4.0082 -5.3642 2.7247 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_16499942_15704118.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:19:36 Heat of formation + Delta-G solvation = -83.323167 kcal Electronic energy + Delta-G solvation = -31276.146175 eV Core-core repulsion = 26668.354362 eV Total energy + Delta-G solvation = -4607.791813 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 374.151 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -48.86185 -41.84507 -40.78762 -39.89806 -38.47112 -37.91638 -36.49009 -35.73691 -34.82013 -31.64750 -30.14932 -28.38631 -28.32148 -27.83732 -27.02509 -26.23024 -24.39077 -23.53992 -22.40851 -21.31035 -20.86991 -20.60857 -19.64321 -19.29794 -18.14695 -17.83147 -17.44266 -17.18507 -17.01032 -16.66042 -16.55162 -16.41689 -16.10477 -15.95989 -15.71332 -15.55305 -15.45727 -15.25364 -14.90652 -14.80724 -14.48026 -14.39044 -14.05145 -13.85977 -13.64156 -13.40159 -13.36576 -13.11871 -12.93850 -12.88974 -12.87362 -12.52564 -12.45955 -12.39310 -12.26381 -12.04567 -12.02182 -11.52199 -11.42856 -11.34154 -11.18029 -11.07814 -10.81934 -10.34891 -10.26496 -10.16958 -8.72688 -5.12093 -0.04768 0.03778 0.67284 1.06781 1.26938 1.58043 1.68425 1.89094 1.97848 2.17860 2.94126 3.09036 3.19830 3.23357 3.45759 3.52683 3.55124 3.72070 3.75897 3.77490 3.92428 3.94026 4.07478 4.25134 4.33605 4.44328 4.48381 4.56455 4.59713 4.64205 4.66524 4.71543 4.73392 4.74874 4.76352 4.82885 4.85014 4.85926 4.90226 4.98320 5.03646 5.06482 5.17683 5.25269 5.31080 5.37400 5.52522 5.82087 6.15938 6.26196 6.72878 7.01468 7.24445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.126 3.874 3 C -0.138 4.138 4 C -0.179 4.179 5 O -0.369 6.369 6 C 0.646 3.354 7 O -0.591 6.591 8 N -0.701 5.701 9 C 0.130 3.870 10 C 0.081 3.919 11 F -0.196 7.196 12 C -0.133 4.133 13 C -0.112 4.112 14 H 0.109 0.891 15 C 0.151 3.849 16 N -0.684 5.684 17 C 0.315 3.685 18 N -0.579 5.579 19 C 0.104 3.896 20 C -0.311 4.311 21 C -0.014 4.014 22 O -0.551 6.551 23 Si 0.732 3.268 24 S 0.115 5.885 25 C -0.142 4.142 26 H 0.060 0.940 27 H 0.088 0.912 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.099 0.901 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.087 0.913 34 H 0.063 0.937 35 H 0.416 0.584 36 H 0.100 0.900 37 H 0.075 0.925 38 H 0.121 0.879 39 H 0.091 0.909 40 H 0.069 0.931 41 H 0.062 0.938 42 H 0.425 0.575 43 H 0.177 0.823 44 H 0.118 0.882 45 H 0.395 0.605 46 H -0.270 1.270 47 H -0.272 1.272 48 H 0.092 0.908 49 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.505 4.325 1.077 5.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.090 3.910 3 C -0.195 4.195 4 C -0.237 4.237 5 O -0.284 6.284 6 C 0.399 3.601 7 O -0.482 6.482 8 N -0.362 5.362 9 C 0.007 3.993 10 C 0.062 3.938 11 F -0.177 7.177 12 C -0.172 4.172 13 C -0.131 4.131 14 H 0.127 0.873 15 C 0.025 3.975 16 N -0.324 5.324 17 C -0.056 4.056 18 N -0.306 5.306 19 C -0.047 4.047 20 C -0.434 4.434 21 C -0.127 4.127 22 O -0.359 6.359 23 Si 0.636 3.364 24 S 0.364 5.636 25 C -0.179 4.179 26 H 0.079 0.921 27 H 0.106 0.894 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.118 0.882 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.106 0.894 34 H 0.082 0.918 35 H 0.252 0.748 36 H 0.118 0.882 37 H 0.094 0.906 38 H 0.139 0.861 39 H 0.110 0.890 40 H 0.087 0.913 41 H 0.081 0.919 42 H 0.264 0.736 43 H 0.194 0.806 44 H 0.136 0.864 45 H 0.245 0.755 46 H -0.196 1.196 47 H -0.198 1.198 48 H 0.110 0.890 49 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 2.413 3.989 1.784 4.992 hybrid contribution -0.662 -0.731 -0.019 0.986 sum 1.752 3.258 1.764 4.098 Atomic orbital electron populations 1.22480 0.94074 1.03706 1.03522 1.22383 0.94461 0.92630 0.81507 1.21895 1.02513 0.90843 1.04240 1.22469 1.01708 1.02258 0.97230 1.86317 1.71518 1.23166 1.47381 1.18262 0.78680 0.80858 0.82298 1.90916 1.42060 1.71002 1.44237 1.44529 1.55489 1.12650 1.23488 1.21892 1.00934 0.79461 0.97016 1.22174 0.99391 0.89970 0.82284 1.92870 1.95819 1.73260 1.55702 1.23551 0.97122 0.92099 1.04380 1.22691 0.95779 0.93519 1.01076 0.87271 1.21326 0.81094 0.96856 0.98187 1.44079 1.16138 1.17422 1.54805 1.23968 0.94388 0.92061 0.95165 1.66483 1.35808 1.03419 1.24878 1.21438 0.87910 0.97226 0.98133 1.25688 1.03736 1.01712 1.12250 1.24224 0.96492 0.99342 0.92676 1.86481 1.80617 1.38207 1.30585 0.94122 0.77518 0.87793 0.77003 1.83778 1.12698 1.16562 1.50601 1.23805 0.94120 0.97551 1.02458 0.92057 0.89366 0.91762 0.91091 0.88240 0.91284 0.91690 0.89435 0.91815 0.74785 0.88197 0.90630 0.86076 0.88991 0.91261 0.91940 0.73583 0.80642 0.86440 0.75524 1.19614 1.19785 0.88984 0.86974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.57 8.37 71.98 0.60 0.04 16 2 C 0.13 0.34 1.13 -10.79 -0.01 0.33 16 3 C -0.14 0.32 8.85 71.98 0.64 0.95 16 4 C -0.18 -0.45 8.37 71.98 0.60 0.15 16 5 O -0.37 -1.99 9.94 -55.54 -0.55 -2.54 16 6 C 0.65 4.06 8.06 129.79 1.05 5.11 16 7 O -0.59 -6.59 11.88 19.81 0.24 -6.35 16 8 N -0.70 -0.21 5.47 -590.83 -3.23 -3.44 16 9 C 0.13 -0.38 5.37 86.38 0.46 0.09 16 10 C 0.08 -0.48 1.67 -10.21 -0.02 -0.50 16 11 F -0.20 0.20 16.79 44.97 0.76 0.95 16 12 C -0.13 1.12 7.10 31.12 0.22 1.34 16 13 C -0.11 1.00 3.73 -10.27 -0.04 0.96 16 14 H 0.11 -1.00 8.14 -2.39 -0.02 -1.02 16 15 C 0.15 -0.85 5.77 86.38 0.50 -0.35 16 16 N -0.68 3.01 5.71 -351.02 -2.01 1.00 16 17 C 0.31 0.33 8.09 179.32 1.45 1.78 16 18 N -0.58 -3.11 10.14 -202.03 -2.05 -5.16 16 19 C 0.10 0.41 11.24 83.54 0.94 1.35 16 20 C -0.31 -0.36 5.73 24.57 0.14 -0.21 16 21 C -0.01 0.00 2.99 71.24 0.21 0.22 16 22 O -0.55 -0.11 12.88 -148.98 -1.92 -2.03 16 23 Si 0.73 -1.17 31.06 68.60 2.13 0.96 16 24 S 0.11 -0.16 20.59 -56.49 -1.16 -1.32 16 25 C -0.14 1.28 7.09 31.18 0.22 1.50 16 26 H 0.06 0.17 8.14 -2.39 -0.02 0.15 16 27 H 0.09 -0.04 8.14 -2.39 -0.02 -0.06 16 28 H 0.06 0.53 5.88 -2.39 -0.01 0.52 16 29 H 0.07 -0.19 8.14 -2.38 -0.02 -0.21 16 30 H 0.10 -0.56 8.14 -2.39 -0.02 -0.58 16 31 H 0.07 -0.16 8.14 -2.39 -0.02 -0.18 16 32 H 0.06 0.49 5.88 -2.39 -0.01 0.48 16 33 H 0.09 -0.07 8.14 -2.39 -0.02 -0.09 16 34 H 0.06 0.11 8.14 -2.39 -0.02 0.09 16 35 H 0.42 -1.03 8.30 -92.71 -0.77 -1.80 16 36 H 0.10 -0.41 7.96 -2.39 -0.02 -0.43 16 37 H 0.08 -0.07 8.14 -2.38 -0.02 -0.08 16 38 H 0.12 -1.27 8.06 -2.39 -0.02 -1.29 16 39 H 0.09 -0.71 8.14 -2.39 -0.02 -0.73 16 40 H 0.07 -0.29 7.87 -2.39 -0.02 -0.31 16 41 H 0.06 -0.18 8.14 -2.38 -0.02 -0.20 16 42 H 0.42 -3.78 8.60 -92.70 -0.80 -4.58 16 43 H 0.18 0.41 8.06 -2.91 -0.02 0.39 16 44 H 0.12 0.02 7.96 -2.39 -0.02 0.00 16 45 H 0.39 -2.92 8.70 -74.05 -0.64 -3.56 16 46 H -0.27 -0.83 7.11 99.48 0.71 -0.12 16 47 H -0.27 -1.20 7.11 99.48 0.71 -0.49 16 48 H 0.09 -0.87 8.14 -2.38 -0.02 -0.89 16 49 H 0.11 -1.09 7.75 -2.39 -0.02 -1.10 16 Total: 0.00 -19.29 414.95 -2.01 -21.29 By element: Atomic # 1 Polarization: -14.94 SS G_CDS: -1.18 Total: -16.11 kcal Atomic # 6 Polarization: 5.78 SS G_CDS: 6.97 Total: 12.75 kcal Atomic # 7 Polarization: -0.31 SS G_CDS: -7.29 Total: -7.60 kcal Atomic # 8 Polarization: -8.69 SS G_CDS: -2.24 Total: -10.92 kcal Atomic # 9 Polarization: 0.20 SS G_CDS: 0.76 Total: 0.95 kcal Atomic # 14 Polarization: -1.17 SS G_CDS: 2.13 Total: 0.96 kcal Atomic # 16 Polarization: -0.16 SS G_CDS: -1.16 Total: -1.32 kcal Total: -19.29 -2.01 -21.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16499942_15704118.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.029 kcal (2) G-P(sol) polarization free energy of solvation -19.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds