Wall clock time and date at job start Mon Mar 8 2021 06:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33323 * 125.95217 * 2 1 4 4 C 1.50696 * 122.71144 * 359.97438 * 3 2 1 5 5 O 1.42897 * 109.47345 * 113.54066 * 4 3 2 6 6 Si 1.86305 * 109.47195 * 233.54070 * 4 3 2 7 7 N 1.32124 * 114.58068 * 180.24583 * 3 2 1 8 8 C 1.29693 * 116.86218 * 359.48999 * 7 3 2 9 9 N 1.38607 * 124.94601 * 180.22085 * 8 7 3 10 10 C 1.46506 * 119.99702 * 180.27760 * 9 8 7 11 11 C 1.53003 * 109.47017 * 180.02562 * 10 9 8 12 12 H 1.09002 * 112.84662 * 316.19280 * 11 10 9 13 13 C 1.53777 * 113.61579 * 87.50068 * 11 10 9 14 14 C 1.53784 * 87.07972 * 139.98241 * 13 11 10 15 15 F 1.39897 * 113.61508 * 89.11805 * 14 13 11 16 16 C 1.53001 * 113.61505 * 220.02073 * 14 13 11 17 17 N 1.46501 * 109.46978 * 277.49863 * 16 14 13 18 18 C 1.34778 * 119.99699 * 180.02562 * 17 16 14 19 19 O 1.21508 * 120.00401 * 359.97438 * 18 17 16 20 20 O 1.34634 * 119.99588 * 180.02562 * 18 17 16 21 21 C 1.45203 * 116.99889 * 179.97438 * 20 18 17 22 22 C 1.53006 * 109.47147 * 59.99694 * 21 20 18 23 23 C 1.52996 * 109.47278 * 179.97438 * 21 20 18 24 24 C 1.53001 * 109.47002 * 299.99965 * 21 20 18 25 25 C 1.53776 * 113.61503 * 185.00280 * 11 10 9 26 26 S 1.70960 * 110.10058 * 0.48851 * 8 7 3 27 27 H 1.08996 * 109.46919 * 84.87863 * 1 2 3 28 28 H 1.08999 * 109.46791 * 204.88145 * 1 2 3 29 29 H 1.08997 * 109.46949 * 324.87973 * 1 2 3 30 30 H 1.08998 * 109.47223 * 353.53765 * 4 3 2 31 31 H 0.96703 * 114.00154 * 60.00281 * 5 4 3 32 32 H 1.48491 * 110.00176 * 179.97438 * 6 4 3 33 33 H 1.48500 * 109.99766 * 301.31894 * 6 4 3 34 34 H 0.96996 * 120.00153 * 0.28428 * 9 8 7 35 35 H 1.08999 * 109.47336 * 299.99963 * 10 9 8 36 36 H 1.08996 * 109.46938 * 60.00564 * 10 9 8 37 37 H 1.09001 * 113.61553 * 254.52866 * 13 11 10 38 38 H 1.09003 * 113.61433 * 25.43793 * 13 11 10 39 39 H 1.09003 * 109.46963 * 37.49572 * 16 14 13 40 40 H 1.09001 * 109.47532 * 157.49377 * 16 14 13 41 41 H 0.96995 * 120.00235 * 359.97438 * 17 16 14 42 42 H 1.08999 * 109.47030 * 60.00052 * 22 21 20 43 43 H 1.09003 * 109.46891 * 180.02562 * 22 21 20 44 44 H 1.09002 * 109.46689 * 300.00065 * 22 21 20 45 45 H 1.09000 * 109.47231 * 60.00168 * 23 21 20 46 46 H 1.09003 * 109.47319 * 179.97438 * 23 21 20 47 47 H 1.08999 * 109.47227 * 300.00148 * 23 21 20 48 48 H 1.08993 * 109.47316 * 59.99483 * 24 21 20 49 49 H 1.09003 * 109.47216 * 180.02562 * 24 21 20 50 50 H 1.09000 * 109.46949 * 299.99490 * 24 21 20 51 51 H 1.09006 * 113.61249 * 334.56565 * 25 11 10 52 52 H 1.08997 * 113.61825 * 105.38210 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2898 1.0793 0.0000 4 6 1.7415 2.4829 -0.0006 5 8 2.0689 3.1228 1.2345 6 14 2.4883 3.4408 -1.4133 7 7 3.5851 0.8188 -0.0052 8 6 3.9315 -0.4310 0.0008 9 7 5.2384 -0.8927 0.0012 10 6 5.5065 -2.3330 0.0021 11 6 7.0180 -2.5704 0.0030 12 1 7.5490 -1.9203 -0.6924 13 6 7.6353 -2.6046 1.4110 14 6 8.5125 -3.7653 0.9127 15 9 9.7197 -3.3499 0.3408 16 6 8.6946 -4.8819 1.9427 17 7 9.7627 -4.5158 2.8762 18 6 10.1008 -5.3543 3.8757 19 8 9.5194 -6.4137 4.0029 20 8 11.0821 -5.0176 4.7338 21 6 11.3925 -5.9687 5.7862 22 6 11.8296 -7.2955 5.1619 23 6 12.5248 -5.4168 6.6547 24 6 10.1507 -6.1964 6.6505 25 6 7.4088 -4.0527 -0.1188 26 16 2.5413 -1.4261 0.0005 27 1 -0.3633 0.0917 -1.0235 28 1 -0.3633 -0.9323 0.4324 29 1 -0.3633 0.8406 0.5912 30 1 0.6582 2.4498 -0.1166 31 1 3.0187 3.1876 1.4042 32 1 1.9552 4.8267 -1.4252 33 1 3.9674 3.4662 -1.2839 34 1 5.9755 -0.2621 0.0010 35 1 5.0678 -2.7837 0.8923 36 1 5.0680 -2.7847 -0.8877 37 1 8.2004 -1.7068 1.6620 38 1 6.9300 -2.8936 2.1902 39 1 7.7643 -5.0241 2.4927 40 1 8.9597 -5.8077 1.4320 41 1 10.2271 -3.6703 2.7744 42 1 12.7142 -7.1333 4.5461 43 1 12.0622 -8.0096 5.9519 44 1 11.0231 -7.6888 4.5429 45 1 12.2138 -4.4716 7.0994 46 1 12.7575 -6.1306 7.4449 47 1 13.4093 -5.2550 6.0387 48 1 9.3444 -6.5897 6.0315 49 1 10.3839 -6.9100 7.4408 50 1 9.8394 -5.2512 7.0953 51 1 6.6415 -4.7376 0.2420 52 1 7.7895 -4.3244 -1.1033 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_16499942_15704122.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:19:40 Heat of formation + Delta-G solvation = -88.265233 kcal Electronic energy + Delta-G solvation = -33497.632594 eV Core-core repulsion = 28734.088857 eV Total energy + Delta-G solvation = -4763.543737 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 388.166 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -48.88628 -41.86338 -41.04740 -40.04907 -38.50778 -37.83970 -36.62627 -35.79983 -34.85510 -33.20963 -30.34375 -28.98501 -28.40043 -28.34002 -27.33645 -26.98909 -25.58457 -24.24024 -23.59721 -22.44682 -21.37558 -20.83224 -20.25399 -19.38670 -19.09489 -18.07473 -17.85773 -17.48763 -17.40992 -17.11329 -16.80582 -16.57624 -16.50076 -16.10780 -15.91792 -15.71866 -15.52156 -15.47618 -15.23889 -14.97311 -14.52078 -14.46352 -14.23092 -14.17965 -13.92206 -13.75483 -13.61500 -13.48039 -13.41396 -13.38122 -13.13514 -12.95681 -12.92728 -12.90954 -12.54197 -12.46481 -12.40178 -12.23275 -12.12563 -11.84513 -11.48211 -11.44632 -11.36749 -11.18067 -11.07014 -10.68753 -10.48709 -10.36243 -10.00342 -8.61627 -4.97216 0.00032 0.18513 0.75770 1.05461 1.25473 1.66652 1.67428 1.78573 1.94742 2.07775 2.92197 3.06446 3.17869 3.20722 3.32053 3.45219 3.48838 3.65160 3.70252 3.75710 3.90642 3.96834 4.07522 4.19086 4.25387 4.30650 4.41213 4.51813 4.52038 4.54572 4.58231 4.63460 4.69492 4.71252 4.73145 4.75382 4.81417 4.83257 4.84028 4.87316 4.93816 4.96680 5.01712 5.02270 5.15656 5.23683 5.29053 5.30129 5.32922 5.50515 5.63628 6.23593 6.30273 6.34336 6.93661 7.22309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.251 4.251 3 C 0.057 3.943 4 C -0.043 4.043 5 O -0.542 6.542 6 Si 0.775 3.225 7 N -0.579 5.579 8 C 0.305 3.695 9 N -0.690 5.690 10 C 0.132 3.868 11 C -0.110 4.110 12 H 0.105 0.895 13 C -0.146 4.146 14 C 0.079 3.921 15 F -0.198 7.198 16 C 0.130 3.870 17 N -0.703 5.703 18 C 0.646 3.354 19 O -0.590 6.590 20 O -0.371 6.371 21 C 0.126 3.874 22 C -0.180 4.180 23 C -0.138 4.138 24 C -0.179 4.179 25 C -0.128 4.128 26 S 0.131 5.869 27 H 0.094 0.906 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.140 0.860 31 H 0.383 0.617 32 H -0.290 1.290 33 H -0.298 1.298 34 H 0.413 0.587 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.115 0.885 39 H 0.103 0.897 40 H 0.078 0.922 41 H 0.415 0.585 42 H 0.060 0.940 43 H 0.088 0.912 44 H 0.064 0.936 45 H 0.069 0.931 46 H 0.100 0.900 47 H 0.068 0.932 48 H 0.065 0.935 49 H 0.087 0.913 50 H 0.061 0.939 51 H 0.129 0.871 52 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.212 -3.466 -1.808 4.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.375 4.375 3 C -0.073 4.073 4 C -0.154 4.154 5 O -0.350 6.350 6 Si 0.679 3.321 7 N -0.306 5.306 8 C -0.067 4.067 9 N -0.331 5.331 10 C 0.009 3.991 11 C -0.128 4.128 12 H 0.123 0.877 13 C -0.184 4.184 14 C 0.060 3.940 15 F -0.178 7.178 16 C 0.007 3.993 17 N -0.363 5.363 18 C 0.399 3.601 19 O -0.481 6.481 20 O -0.285 6.285 21 C 0.090 3.910 22 C -0.237 4.237 23 C -0.195 4.195 24 C -0.236 4.236 25 C -0.167 4.167 26 S 0.380 5.620 27 H 0.112 0.888 28 H 0.093 0.907 29 H 0.099 0.901 30 H 0.158 0.842 31 H 0.232 0.768 32 H -0.217 1.217 33 H -0.225 1.225 34 H 0.251 0.749 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.101 0.899 38 H 0.134 0.866 39 H 0.121 0.879 40 H 0.096 0.904 41 H 0.251 0.749 42 H 0.079 0.921 43 H 0.107 0.893 44 H 0.083 0.917 45 H 0.088 0.912 46 H 0.118 0.882 47 H 0.087 0.913 48 H 0.084 0.916 49 H 0.106 0.894 50 H 0.080 0.920 51 H 0.148 0.852 52 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.282 -4.199 -1.884 4.777 hybrid contribution 1.387 1.628 1.002 2.362 sum 0.105 -2.571 -0.882 2.720 Atomic orbital electron populations 1.20308 0.85291 1.03624 1.04103 1.25446 1.02319 0.93164 1.16543 1.20039 0.86916 0.97465 1.02864 1.24815 1.05672 0.89861 0.95096 1.86534 1.30162 1.80117 1.38138 0.93898 0.77287 0.77448 0.83425 1.66047 1.18028 1.17958 1.28587 1.23535 0.92901 0.91629 0.98623 1.44069 1.01077 1.08039 1.79868 1.21679 0.95920 0.78272 1.03256 1.22612 0.94007 0.98253 0.97978 0.87709 1.23810 0.98630 0.98005 0.97938 1.22169 0.81428 0.95790 0.94619 1.92871 1.47539 1.91402 1.86020 1.21922 0.90938 0.97476 0.88971 1.44560 1.40088 1.22657 1.29013 1.18253 0.79035 0.82819 0.79974 1.90911 1.56944 1.24677 1.75537 1.86318 1.51408 1.50163 1.40651 1.22387 0.96490 0.87638 0.84478 1.22479 1.02079 0.96584 1.02593 1.21898 0.95934 1.02744 0.98967 1.22470 0.97759 1.03034 1.00380 1.23567 0.96772 0.96547 0.99796 1.83741 0.95462 1.09301 1.73498 0.88800 0.90722 0.90125 0.84243 0.76777 1.21693 1.22474 0.74945 0.90087 0.90013 0.89927 0.86630 0.87933 0.90370 0.74929 0.92086 0.89329 0.91659 0.91221 0.88188 0.91304 0.91568 0.89392 0.91953 0.85237 0.88678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 0.26 9.71 71.24 0.69 0.95 16 2 C -0.25 -0.42 6.57 24.57 0.16 -0.26 16 3 C 0.06 0.26 5.20 41.40 0.22 0.48 16 4 C -0.04 -0.14 2.84 71.23 0.20 0.07 16 5 O -0.54 -3.75 12.88 -148.98 -1.92 -5.67 16 6 Si 0.77 2.26 32.61 68.60 2.24 4.49 16 7 N -0.58 -3.64 9.76 -189.87 -1.85 -5.49 16 8 C 0.30 0.66 8.24 179.32 1.48 2.14 16 9 N -0.69 2.16 5.71 -351.00 -2.01 0.16 16 10 C 0.13 -1.14 5.37 86.38 0.46 -0.68 16 11 C -0.11 1.07 3.73 -10.27 -0.04 1.03 16 12 H 0.10 -0.88 8.14 -2.39 -0.02 -0.90 16 13 C -0.15 1.28 7.08 31.12 0.22 1.50 16 14 C 0.08 -0.51 1.67 -10.27 -0.02 -0.53 16 15 F -0.20 0.14 16.80 44.97 0.76 0.89 16 16 C 0.13 -0.49 5.37 86.38 0.46 -0.03 16 17 N -0.70 -0.20 5.47 -590.85 -3.23 -3.43 16 18 C 0.65 4.00 8.06 129.79 1.05 5.05 16 19 O -0.59 -6.27 11.88 19.82 0.24 -6.03 16 20 O -0.37 -2.10 9.94 -55.44 -0.55 -2.65 16 21 C 0.13 0.36 1.13 -10.79 -0.01 0.34 16 22 C -0.18 -0.54 8.37 71.98 0.60 0.06 16 23 C -0.14 0.27 8.85 71.98 0.64 0.90 16 24 C -0.18 -0.46 8.37 71.98 0.60 0.14 16 25 C -0.13 1.35 7.10 31.12 0.22 1.57 16 26 S 0.13 -0.08 22.32 -56.49 -1.26 -1.34 16 27 H 0.09 -0.64 8.14 -2.39 -0.02 -0.66 16 28 H 0.07 -0.35 8.14 -2.39 -0.02 -0.37 16 29 H 0.08 -0.29 7.17 -2.39 -0.02 -0.31 16 30 H 0.14 -0.16 6.33 -2.39 -0.02 -0.17 16 31 H 0.38 1.57 8.70 -74.05 -0.64 0.93 16 32 H -0.29 -2.32 7.11 99.48 0.71 -1.61 16 33 H -0.30 -3.10 7.11 99.48 0.71 -2.39 16 34 H 0.41 -1.38 8.60 -92.71 -0.80 -2.18 16 35 H 0.08 -0.80 7.84 -2.39 -0.02 -0.82 16 36 H 0.08 -0.78 8.14 -2.39 -0.02 -0.80 16 37 H 0.08 -0.59 8.14 -2.39 -0.02 -0.61 16 38 H 0.12 -1.19 7.72 -2.39 -0.02 -1.21 16 39 H 0.10 -0.57 7.94 -2.39 -0.02 -0.59 16 40 H 0.08 -0.17 8.14 -2.39 -0.02 -0.19 16 41 H 0.41 -0.79 8.30 -92.71 -0.77 -1.56 16 42 H 0.06 0.17 8.14 -2.39 -0.02 0.15 16 43 H 0.09 -0.05 8.14 -2.39 -0.02 -0.07 16 44 H 0.06 0.52 5.88 -2.39 -0.01 0.50 16 45 H 0.07 -0.14 8.14 -2.39 -0.02 -0.16 16 46 H 0.10 -0.54 8.14 -2.39 -0.02 -0.56 16 47 H 0.07 -0.13 8.14 -2.39 -0.02 -0.15 16 48 H 0.07 0.49 5.88 -2.39 -0.01 0.47 16 49 H 0.09 -0.08 8.14 -2.39 -0.02 -0.10 16 50 H 0.06 0.12 8.14 -2.39 -0.02 0.10 16 51 H 0.13 -1.84 8.06 -2.38 -0.02 -1.86 16 52 H 0.09 -0.94 8.14 -2.39 -0.02 -0.96 16 Total: 0.00 -20.53 435.63 -1.86 -22.39 By element: Atomic # 1 Polarization: -14.86 SS G_CDS: -1.20 Total: -16.06 kcal Atomic # 6 Polarization: 5.81 SS G_CDS: 6.94 Total: 12.74 kcal Atomic # 7 Polarization: -1.68 SS G_CDS: -7.09 Total: -8.77 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: -2.23 Total: -14.35 kcal Atomic # 9 Polarization: 0.14 SS G_CDS: 0.76 Total: 0.89 kcal Atomic # 14 Polarization: 2.26 SS G_CDS: 2.24 Total: 4.49 kcal Atomic # 16 Polarization: -0.08 SS G_CDS: -1.26 Total: -1.34 kcal Total: -20.53 -1.86 -22.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16499942_15704122.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.871 kcal (2) G-P(sol) polarization free energy of solvation -20.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds