Wall clock time and date at job start Mon Mar 8 2021 06:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33333 * 125.94953 * 2 1 4 4 C 1.50694 * 122.70711 * 359.97438 * 3 2 1 5 5 O 1.42892 * 109.47399 * 329.99441 * 4 3 2 6 6 Si 1.86308 * 109.46696 * 209.99410 * 4 3 2 7 7 N 1.32117 * 114.57623 * 180.02562 * 3 2 1 8 8 C 1.29688 * 116.86910 * 359.97438 * 7 3 2 9 9 N 1.38616 * 124.94753 * 179.97438 * 8 7 3 10 10 C 1.46500 * 119.99760 * 180.02562 * 9 8 7 11 11 C 1.52997 * 109.46929 * 180.02562 * 10 9 8 12 12 F 1.39893 * 112.91079 * 48.74839 * 11 10 9 13 13 C 1.53787 * 113.61251 * 180.02562 * 11 10 9 14 14 C 1.53779 * 87.07963 * 139.97890 * 13 11 10 15 15 H 1.09001 * 113.61377 * 89.20020 * 14 13 11 16 16 C 1.52998 * 113.61250 * 220.01477 * 14 13 11 17 17 O 1.42900 * 109.47401 * 185.00015 * 16 14 13 18 18 C 1.53779 * 87.08402 * 334.56577 * 14 13 11 19 19 S 1.70959 * 110.09995 * 0.24446 * 8 7 3 20 20 H 1.09005 * 109.46972 * 90.00252 * 1 2 3 21 21 H 1.09006 * 109.47008 * 209.99548 * 1 2 3 22 22 H 1.08999 * 109.47335 * 329.99758 * 1 2 3 23 23 H 1.08994 * 109.47438 * 89.99787 * 4 3 2 24 24 H 0.96705 * 114.00129 * 180.02562 * 5 4 3 25 25 H 1.48494 * 110.00053 * 298.68321 * 6 4 3 26 26 H 1.48499 * 110.00099 * 60.00267 * 6 4 3 27 27 H 0.96997 * 119.99861 * 0.02562 * 9 8 7 28 28 H 1.08999 * 109.46930 * 59.99915 * 10 9 8 29 29 H 1.09003 * 109.46934 * 300.00189 * 10 9 8 30 30 H 1.08997 * 113.61028 * 254.52850 * 13 11 10 31 31 H 1.09000 * 113.61529 * 25.42990 * 13 11 10 32 32 H 1.09007 * 109.47269 * 305.00322 * 16 14 13 33 33 H 1.08998 * 109.47235 * 64.99931 * 16 14 13 34 34 H 0.96697 * 114.00419 * 180.02562 * 17 16 14 35 35 H 1.09002 * 113.61557 * 270.88569 * 18 14 13 36 36 H 1.09004 * 113.61501 * 139.97990 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2898 1.0794 0.0000 4 6 1.7413 2.4830 -0.0006 5 8 0.4816 2.5019 -0.6747 6 14 2.9326 3.6147 -0.8786 7 7 3.5850 0.8188 -0.0005 8 6 3.9315 -0.4309 -0.0005 9 7 5.2385 -0.8925 -0.0015 10 6 5.5067 -2.3328 -0.0019 11 6 7.0181 -2.5701 -0.0024 12 9 7.6882 -1.8154 0.9664 13 6 7.4081 -4.0577 -0.0034 14 6 8.5257 -3.6830 -0.9910 15 1 9.4603 -3.4010 -0.5063 16 6 8.7226 -4.7068 -2.1108 17 8 9.8508 -4.3337 -2.9044 18 6 7.6548 -2.4832 -1.3995 19 16 2.5414 -1.4260 -0.0065 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3633 -0.8901 0.5138 22 1 -0.3634 0.8899 0.5139 23 1 1.6087 2.8217 1.0269 24 1 0.0693 3.3758 -0.7136 25 1 4.2369 3.6285 -0.1689 26 1 3.1221 3.1637 -2.2807 27 1 5.9756 -0.2619 -0.0019 28 1 5.0673 -2.7839 -0.8916 29 1 5.0686 -2.7841 0.8884 30 1 7.7767 -4.4130 0.9588 31 1 6.6462 -4.7085 -0.4325 32 1 8.8936 -5.6919 -1.6765 33 1 7.8312 -4.7359 -2.7375 34 1 10.0352 -4.9393 -3.6354 35 1 6.9604 -2.7036 -2.2103 36 1 8.2227 -1.5675 -1.5643 There are 50 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 50 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_16500594_15704122.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:27:11 Heat of formation + Delta-G solvation = -52.512816 kcal Electronic energy + Delta-G solvation = -20823.853454 eV Core-core repulsion = 17351.882397 eV Total energy + Delta-G solvation = -3471.971057 eV No. of doubly occupied orbitals = 50 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 289.093 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -48.96130 -40.96820 -40.14902 -38.02918 -37.37329 -36.47444 -32.97103 -30.55314 -29.07371 -27.35902 -27.02155 -25.49518 -24.08094 -22.61144 -20.96516 -20.29500 -19.29960 -18.44809 -18.16966 -17.52566 -17.36513 -16.96990 -16.66078 -16.24691 -16.14107 -15.61218 -15.48803 -15.29259 -15.03206 -14.61400 -14.07001 -14.03782 -13.85930 -13.76789 -13.63185 -13.38253 -13.35604 -12.83934 -12.56962 -12.06857 -12.04714 -11.75264 -11.63041 -11.58617 -11.14253 -11.01292 -10.60706 -10.29906 -9.96504 -8.62722 -4.80065 0.05566 0.15985 0.78445 1.40703 1.70256 1.91282 1.96799 2.39405 2.78979 2.87282 2.91943 3.10250 3.13393 3.31757 3.56503 3.91524 3.98130 4.08773 4.13529 4.21910 4.24238 4.31206 4.35353 4.40478 4.45201 4.45478 4.61358 4.73318 4.74380 4.89201 4.93874 5.12100 5.16229 5.37196 5.47666 6.19340 6.54410 6.63586 6.91483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C -0.225 4.225 3 C 0.100 3.900 4 C -0.035 4.035 5 O -0.544 6.544 6 Si 0.712 3.288 7 N -0.547 5.547 8 C 0.319 3.681 9 N -0.693 5.693 10 C 0.116 3.884 11 C 0.084 3.916 12 F -0.180 7.180 13 C -0.141 4.141 14 C -0.108 4.108 15 H 0.106 0.894 16 C 0.086 3.914 17 O -0.573 6.573 18 C -0.147 4.147 19 S 0.101 5.899 20 H 0.073 0.927 21 H 0.057 0.943 22 H 0.088 0.912 23 H 0.081 0.919 24 H 0.385 0.615 25 H -0.252 1.252 26 H -0.264 1.264 27 H 0.416 0.584 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.107 0.893 32 H 0.051 0.949 33 H 0.049 0.951 34 H 0.383 0.617 35 H 0.103 0.897 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.367 -2.399 -0.853 3.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.347 4.347 3 C -0.028 4.028 4 C -0.148 4.148 5 O -0.350 6.350 6 Si 0.612 3.388 7 N -0.275 5.275 8 C -0.052 4.052 9 N -0.335 5.335 10 C -0.009 4.009 11 C 0.065 3.935 12 F -0.160 7.160 13 C -0.179 4.179 14 C -0.126 4.126 15 H 0.124 0.876 16 C 0.008 3.992 17 O -0.378 6.378 18 C -0.184 4.184 19 S 0.349 5.651 20 H 0.091 0.909 21 H 0.075 0.925 22 H 0.107 0.893 23 H 0.099 0.901 24 H 0.234 0.766 25 H -0.177 1.177 26 H -0.189 1.189 27 H 0.254 0.746 28 H 0.107 0.893 29 H 0.100 0.900 30 H 0.111 0.889 31 H 0.125 0.875 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.230 0.770 35 H 0.121 0.879 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.153 -3.349 -0.881 3.650 hybrid contribution 0.129 -0.011 0.045 0.137 sum -1.025 -3.359 -0.837 3.610 Atomic orbital electron populations 1.20109 0.86088 1.02519 1.02858 1.25150 1.01538 0.92147 1.15900 1.18942 0.86340 0.95157 1.02393 1.23951 0.93126 0.96183 1.01513 1.86460 1.33793 1.35709 1.79083 0.96193 0.78967 0.84576 0.79108 1.65685 1.17262 1.16837 1.27670 1.23143 0.91610 0.91355 0.99104 1.43665 1.02165 1.06718 1.80934 1.21996 0.94541 0.80640 1.03757 1.21963 0.89673 0.92959 0.88881 1.92903 1.81463 1.77295 1.64387 1.23562 0.98866 0.93900 1.01545 1.22505 0.98600 0.95645 0.95859 0.87557 1.22131 0.88555 0.96667 0.91852 1.86493 1.49558 1.55128 1.46667 1.23729 0.99182 1.00562 0.94942 1.83880 0.96487 1.10660 1.74058 0.90867 0.92451 0.89301 0.90103 0.76648 1.17663 1.18887 0.74576 0.89334 0.90033 0.88925 0.87507 0.93053 0.93228 0.77003 0.87907 0.89516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.08 8.96 36.01 0.32 0.24 16 2 C -0.22 -0.83 6.50 -36.02 -0.23 -1.06 16 3 C 0.10 0.48 5.95 -84.19 -0.50 -0.02 16 4 C -0.04 -0.06 2.82 36.00 0.10 0.04 16 5 O -0.54 0.00 9.86 -35.23 -0.35 -0.35 16 6 Si 0.71 1.14 32.08 -169.99 -5.45 -4.31 16 7 N -0.55 -3.22 8.94 -11.36 -0.10 -3.32 16 8 C 0.32 1.23 8.24 -87.67 -0.72 0.51 16 9 N -0.69 -1.18 5.62 -62.30 -0.35 -1.54 16 10 C 0.12 -0.13 5.22 -4.04 -0.02 -0.15 16 11 C 0.08 -0.09 1.67 -89.80 -0.15 -0.24 16 12 F -0.18 -0.35 16.80 2.25 0.04 -0.31 16 13 C -0.14 0.39 7.10 -25.92 -0.18 0.20 16 14 C -0.11 0.13 3.99 -89.81 -0.36 -0.23 16 15 H 0.11 0.04 8.14 -51.93 -0.42 -0.39 16 16 C 0.09 -0.16 6.88 37.16 0.26 0.10 16 17 O -0.57 -0.05 13.66 -35.23 -0.48 -0.53 16 18 C -0.15 0.17 7.08 -25.92 -0.18 -0.01 16 19 S 0.10 0.23 22.32 -107.50 -2.40 -2.17 16 20 H 0.07 0.11 8.14 -51.93 -0.42 -0.31 16 21 H 0.06 0.03 8.14 -51.93 -0.42 -0.39 16 22 H 0.09 0.09 6.62 -51.93 -0.34 -0.25 16 23 H 0.08 0.00 7.96 -51.93 -0.41 -0.41 16 24 H 0.39 -1.98 8.74 45.56 0.40 -1.58 16 25 H -0.25 -1.34 7.11 56.52 0.40 -0.94 16 26 H -0.26 -1.51 7.11 56.52 0.40 -1.11 16 27 H 0.42 0.86 8.31 -40.82 -0.34 0.52 16 28 H 0.09 -0.24 7.94 -51.93 -0.41 -0.65 16 29 H 0.08 -0.13 8.14 -51.93 -0.42 -0.55 16 30 H 0.09 -0.24 8.14 -51.93 -0.42 -0.67 16 31 H 0.11 -0.51 8.06 -51.93 -0.42 -0.93 16 32 H 0.05 -0.14 8.14 -51.93 -0.42 -0.57 16 33 H 0.05 -0.15 7.84 -51.93 -0.41 -0.56 16 34 H 0.38 -1.56 9.12 45.56 0.42 -1.15 16 35 H 0.10 -0.23 7.72 -51.93 -0.40 -0.63 16 36 H 0.09 0.01 8.14 -51.93 -0.42 -0.42 16 LS Contribution 317.21 15.07 4.78 4.78 Total: 0.00 -9.27 317.21 -10.07 -19.34 By element: Atomic # 1 Polarization: -6.89 SS G_CDS: -4.08 Total: -10.97 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: -1.67 Total: -0.62 kcal Atomic # 7 Polarization: -4.40 SS G_CDS: -0.45 Total: -4.85 kcal Atomic # 8 Polarization: -0.05 SS G_CDS: -0.83 Total: -0.87 kcal Atomic # 9 Polarization: -0.35 SS G_CDS: 0.04 Total: -0.31 kcal Atomic # 14 Polarization: 1.14 SS G_CDS: -5.45 Total: -4.31 kcal Atomic # 16 Polarization: 0.23 SS G_CDS: -2.40 Total: -2.17 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -9.27 -10.07 -19.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16500594_15704122.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.171 kcal (2) G-P(sol) polarization free energy of solvation -9.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds