Wall clock time and date at job start Mon Mar 8 2021 06:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86300 * 109.46934 * 2 1 4 4 C 1.50699 * 109.47051 * 240.00154 * 2 1 3 5 5 C 1.38840 * 120.33882 * 299.99542 * 4 2 1 6 6 C 1.38334 * 118.50792 * 180.02562 * 5 4 2 7 7 C 1.39095 * 119.09969 * 0.02562 * 6 5 4 8 8 N 1.39008 * 119.70868 * 179.72112 * 7 6 5 9 9 C 1.46505 * 119.99578 * 0.02562 * 8 7 6 10 10 C 1.53002 * 109.46792 * 179.97438 * 9 8 7 11 11 F 1.39901 * 112.85072 * 316.19978 * 10 9 8 12 12 C 1.53781 * 113.61429 * 87.50590 * 10 9 8 13 13 C 1.53776 * 87.08533 * 89.11358 * 12 10 9 14 14 H 1.09005 * 113.61717 * 270.89056 * 13 12 10 15 15 C 1.52994 * 113.69321 * 139.99023 * 13 12 10 16 16 O 1.42909 * 109.46790 * 87.46980 * 15 13 12 17 17 C 1.53784 * 113.61400 * 185.00048 * 10 9 8 18 18 N 1.32431 * 120.58957 * 0.02562 * 7 6 5 19 19 C 1.31940 * 121.61846 * 0.02562 * 18 7 6 20 20 H 0.96707 * 113.99998 * 60.00389 * 1 2 3 21 21 H 1.09002 * 109.46872 * 119.99863 * 2 1 3 22 22 H 1.48494 * 110.00291 * 298.67859 * 3 2 1 23 23 H 1.48506 * 109.99693 * 60.00036 * 3 2 1 24 24 H 1.07999 * 120.74548 * 0.02562 * 5 4 2 25 25 H 1.07999 * 120.45444 * 180.02562 * 6 5 4 26 26 H 0.96998 * 120.00522 * 180.02562 * 8 7 6 27 27 H 1.08999 * 109.47017 * 299.99528 * 9 8 7 28 28 H 1.09000 * 109.47004 * 60.00439 * 9 8 7 29 29 H 1.09000 * 113.61652 * 203.66407 * 12 10 9 30 30 H 1.09005 * 113.61662 * 334.56524 * 12 10 9 31 31 H 1.09002 * 109.46981 * 207.46483 * 15 13 12 32 32 H 1.09001 * 109.47054 * 327.46885 * 15 13 12 33 33 H 0.96706 * 113.99612 * 180.02562 * 16 15 13 34 34 H 1.09003 * 113.60970 * 25.43088 * 17 10 9 35 35 H 1.08994 * 113.61189 * 156.33968 * 17 10 9 36 36 H 1.08003 * 119.56553 * 180.02562 * 19 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 1.6003 -2.0395 -1.4572 6 6 2.0824 -2.6546 -2.5986 7 6 2.8784 -1.9250 -3.4753 8 7 3.3745 -2.5322 -4.6232 9 6 3.0577 -3.9345 -4.9053 10 6 3.7214 -4.3529 -6.2188 11 9 3.5852 -3.3920 -7.2265 12 6 5.1604 -4.8669 -6.0456 13 6 4.5531 -6.2654 -5.8451 14 1 4.3076 -6.4901 -4.8071 15 6 5.3473 -7.3835 -6.5233 16 8 6.3664 -7.8494 -5.6363 17 6 3.3513 -5.7757 -6.6702 18 7 3.1730 -0.6587 -3.2233 19 6 2.7279 -0.0470 -2.1423 20 1 -0.3933 0.4417 -0.7651 21 1 1.7923 -0.5138 0.8900 22 1 1.5879 2.4586 -1.2242 23 1 1.5613 2.4678 1.2086 24 1 0.9803 -2.5811 -0.7581 25 1 1.8440 -3.6873 -2.8062 26 1 3.9304 -2.0275 -5.2374 27 1 3.4292 -4.5611 -4.0944 28 1 1.9776 -4.0529 -4.9906 29 1 5.7668 -4.7794 -6.9471 30 1 5.6597 -4.4765 -5.1588 31 1 4.6769 -8.2066 -6.7708 32 1 5.8061 -7.0016 -7.4353 33 1 6.9108 -8.5603 -6.0016 34 1 2.3900 -6.1189 -6.2875 35 1 3.4632 -5.9365 -7.7423 36 1 2.9882 0.9869 -1.9698 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_16500646_13915762.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:27:17 Heat of formation + Delta-G solvation = -59.911918 kcal Electronic energy + Delta-G solvation = -20269.227446 eV Core-core repulsion = 16863.320912 eV Total energy + Delta-G solvation = -3405.906534 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -48.76464 -41.43516 -40.19198 -38.21958 -37.31146 -36.29309 -33.50363 -31.88660 -29.69817 -27.41616 -27.02627 -25.62100 -24.81014 -22.86232 -22.44763 -20.25434 -18.80754 -18.63292 -18.23400 -17.88639 -17.13976 -16.73936 -16.51735 -16.40873 -16.26111 -15.86871 -15.46785 -15.34453 -15.06883 -14.83053 -14.37312 -14.32223 -14.01983 -13.85687 -13.45908 -13.32935 -12.80717 -12.49070 -12.34685 -12.11440 -12.05433 -11.49923 -11.43466 -11.19095 -10.83972 -10.79425 -10.54891 -10.43566 -8.77885 -4.91350 0.20016 0.37589 1.33626 1.60647 1.93552 1.96583 2.79726 3.00801 3.12149 3.24823 3.28102 3.44233 3.47472 3.59071 3.76389 3.89727 4.00921 4.07731 4.23425 4.32553 4.36707 4.37779 4.47011 4.59074 4.60404 4.65070 4.67779 4.72720 4.74921 4.90948 4.97508 5.03181 5.26380 5.32438 5.47107 5.91552 6.40362 6.49794 6.87429 7.08992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.548 6.548 2 C -0.061 4.061 3 Si 0.754 3.246 4 C -0.232 4.232 5 C -0.009 4.009 6 C -0.240 4.240 7 C 0.393 3.607 8 N -0.723 5.723 9 C 0.129 3.871 10 C 0.075 3.925 11 F -0.212 7.212 12 C -0.147 4.147 13 C -0.105 4.105 14 H 0.108 0.892 15 C 0.082 3.918 16 O -0.596 6.596 17 C -0.132 4.132 18 N -0.566 5.566 19 C 0.146 3.854 20 H 0.385 0.615 21 H 0.128 0.872 22 H -0.286 1.286 23 H -0.299 1.299 24 H 0.150 0.850 25 H 0.153 0.847 26 H 0.405 0.595 27 H 0.101 0.899 28 H 0.088 0.912 29 H 0.094 0.906 30 H 0.078 0.922 31 H 0.063 0.937 32 H 0.053 0.947 33 H 0.397 0.603 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.298 -5.435 -1.135 5.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.356 6.356 2 C -0.171 4.171 3 Si 0.660 3.340 4 C -0.238 4.238 5 C -0.035 4.035 6 C -0.265 4.265 7 C 0.158 3.842 8 N -0.356 5.356 9 C 0.004 3.996 10 C 0.057 3.943 11 F -0.192 7.192 12 C -0.185 4.185 13 C -0.123 4.123 14 H 0.126 0.874 15 C 0.005 3.995 16 O -0.405 6.405 17 C -0.170 4.170 18 N -0.284 5.284 19 C -0.011 4.011 20 H 0.234 0.766 21 H 0.145 0.855 22 H -0.213 1.213 23 H -0.227 1.227 24 H 0.167 0.833 25 H 0.170 0.830 26 H 0.241 0.759 27 H 0.119 0.881 28 H 0.106 0.894 29 H 0.112 0.888 30 H 0.096 0.904 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.247 0.753 34 H 0.124 0.876 35 H 0.124 0.876 36 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 1.387 -4.215 -0.869 4.521 hybrid contribution -1.074 -0.472 -0.825 1.434 sum 0.313 -4.687 -1.694 4.994 Atomic orbital electron populations 1.86561 1.18641 1.80261 1.50133 1.24878 0.83169 1.10965 0.98117 0.94241 0.90568 0.72712 0.76486 1.20995 1.05635 0.96756 1.00385 1.21416 0.93736 0.93267 0.95070 1.21653 1.04989 1.02647 0.97214 1.18583 0.89856 0.88589 0.87201 1.44359 1.56267 1.12011 1.22953 1.21807 1.01056 0.81587 0.95140 1.22725 0.99106 0.86861 0.85613 1.92839 1.96879 1.67059 1.62471 1.23723 0.94817 0.96165 1.03793 1.22370 0.95554 0.93141 1.01232 0.87432 1.22205 0.89553 0.96104 0.91657 1.86435 1.49355 1.58932 1.45789 1.23592 0.99982 0.91032 1.02368 1.67125 1.28377 1.09937 1.22948 1.22469 0.91658 0.99313 0.87662 0.76632 0.85453 1.21295 1.22698 0.83269 0.82974 0.75941 0.88133 0.89403 0.88751 0.90369 0.91882 0.92841 0.75293 0.87650 0.87621 0.81622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -1.27 12.78 -148.98 -1.90 -3.18 16 2 C -0.06 0.03 2.84 71.24 0.20 0.23 16 3 Si 0.75 -0.77 29.82 68.60 2.05 1.28 16 4 C -0.23 -0.30 5.40 -19.76 -0.11 -0.41 16 5 C -0.01 -0.01 9.76 22.44 0.22 0.21 16 6 C -0.24 -0.22 9.33 22.50 0.21 -0.01 16 7 C 0.39 1.80 7.65 133.04 1.02 2.81 16 8 N -0.72 -1.28 5.62 -345.07 -1.94 -3.22 16 9 C 0.13 -0.48 4.48 86.38 0.39 -0.09 16 10 C 0.08 -0.21 1.91 -10.27 -0.02 -0.23 16 11 F -0.21 -0.77 16.61 44.97 0.75 -0.02 16 12 C -0.15 0.40 7.06 31.12 0.22 0.62 16 13 C -0.10 0.54 3.66 -10.27 -0.04 0.50 16 14 H 0.11 -0.57 7.72 -2.38 -0.02 -0.59 16 15 C 0.08 -0.40 6.89 71.98 0.50 0.09 16 16 O -0.60 0.85 13.66 -148.98 -2.04 -1.18 16 17 C -0.13 0.87 7.13 31.12 0.22 1.09 16 18 N -0.57 -4.13 10.39 -193.26 -2.01 -6.14 16 19 C 0.15 0.50 9.84 84.64 0.83 1.33 16 20 H 0.38 -0.99 8.70 -74.05 -0.64 -1.63 16 21 H 0.13 -0.34 7.96 -2.39 -0.02 -0.35 16 22 H -0.29 -1.01 7.11 99.48 0.71 -0.30 16 23 H -0.30 -1.88 7.11 99.48 0.71 -1.18 16 24 H 0.15 -0.34 8.06 -2.91 -0.02 -0.36 16 25 H 0.15 -0.61 6.71 -2.91 -0.02 -0.63 16 26 H 0.40 1.42 8.15 -92.71 -0.76 0.66 16 27 H 0.10 -0.65 7.18 -2.39 -0.02 -0.67 16 28 H 0.09 -0.48 7.92 -2.39 -0.02 -0.50 16 29 H 0.09 -0.19 7.90 -2.39 -0.02 -0.21 16 30 H 0.08 -0.10 8.10 -2.38 -0.02 -0.12 16 31 H 0.06 -0.46 8.14 -2.39 -0.02 -0.48 16 32 H 0.05 -0.31 7.85 -2.39 -0.02 -0.33 16 33 H 0.40 -3.70 9.12 -74.05 -0.68 -4.38 16 34 H 0.11 -1.02 8.10 -2.39 -0.02 -1.04 16 35 H 0.11 -0.72 8.10 -2.39 -0.02 -0.74 16 36 H 0.17 -0.08 4.88 -2.91 -0.01 -0.09 16 Total: 0.00 -16.85 303.62 -2.36 -19.21 By element: Atomic # 1 Polarization: -12.02 SS G_CDS: -0.91 Total: -12.92 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: 3.64 Total: 6.17 kcal Atomic # 7 Polarization: -5.41 SS G_CDS: -3.95 Total: -9.35 kcal Atomic # 8 Polarization: -0.42 SS G_CDS: -3.94 Total: -4.36 kcal Atomic # 9 Polarization: -0.77 SS G_CDS: 0.75 Total: -0.02 kcal Atomic # 14 Polarization: -0.77 SS G_CDS: 2.05 Total: 1.28 kcal Total: -16.85 -2.36 -19.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16500646_13915762.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.698 kcal (2) G-P(sol) polarization free energy of solvation -16.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds