Wall clock time and date at job start Mon Mar 8 2021 06:38:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45195 * 109.47124 * 2 1 4 4 C 1.34232 * 116.99927 * 180.02562 * 3 2 1 5 5 O 1.20820 * 119.99791 * 359.97438 * 4 3 2 6 6 C 1.50701 * 119.99882 * 179.97438 * 4 3 2 7 7 H 1.09002 * 112.85178 * 309.66385 * 6 4 3 8 8 C 1.53785 * 113.69000 * 80.93543 * 6 4 3 9 9 C 1.53777 * 87.08241 * 89.12299 * 8 6 4 10 10 F 1.39895 * 113.69560 * 270.87312 * 9 8 6 11 11 C 1.52999 * 113.61195 * 139.97738 * 9 8 6 12 12 N 1.46498 * 109.46770 * 87.50624 * 11 9 8 13 13 C 1.38407 * 119.99938 * 180.02562 * 12 11 9 14 14 N 1.32494 * 119.21691 * 359.72726 * 13 12 11 15 15 C 1.32285 * 120.73997 * 179.71899 * 14 13 12 16 16 C 1.38602 * 119.19507 * 0.55023 * 15 14 13 17 17 C 1.50696 * 120.72124 * 179.71275 * 16 15 14 18 18 O 1.42893 * 109.47690 * 120.01736 * 17 16 15 19 19 Si 1.86303 * 109.46863 * 0.02562 * 17 16 15 20 20 C 1.38601 * 118.56024 * 359.72083 * 16 15 14 21 21 N 1.32276 * 119.19944 * 0.02562 * 20 16 15 22 22 C 1.53781 * 113.61206 * 178.47078 * 6 4 3 23 23 H 1.08998 * 109.47094 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.46887 * 300.00022 * 1 2 3 25 25 H 1.08993 * 109.46867 * 59.99942 * 1 2 3 26 26 H 1.09001 * 109.46715 * 239.99284 * 2 1 3 27 27 H 1.09003 * 109.46911 * 120.00138 * 2 1 3 28 28 H 1.08999 * 113.61060 * 203.67722 * 8 6 4 29 29 H 1.08997 * 113.61198 * 334.57515 * 8 6 4 30 30 H 1.09005 * 109.47016 * 207.50089 * 11 9 8 31 31 H 1.08994 * 109.47189 * 327.50593 * 11 9 8 32 32 H 0.96999 * 120.00322 * 359.97438 * 12 11 9 33 33 H 1.07997 * 120.39932 * 180.25172 * 15 14 13 34 34 H 1.08997 * 109.46904 * 240.02127 * 17 16 15 35 35 H 0.96710 * 114.00209 * 299.99938 * 18 17 16 36 36 H 1.48501 * 110.00239 * 58.68448 * 19 17 16 37 37 H 1.48504 * 109.99743 * 180.02562 * 19 17 16 38 38 H 1.08001 * 120.40677 * 180.02562 * 20 16 15 39 39 H 1.09000 * 113.61578 * 25.34539 * 22 6 4 40 40 H 1.09001 * 113.61682 * 156.17118 * 22 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9208 2.9374 -0.0012 7 1 3.4899 3.5733 -0.7744 8 6 3.9524 3.5935 1.3893 9 6 5.3426 2.9613 1.5695 10 9 5.3087 1.6770 2.1231 11 6 6.3489 3.8812 2.2638 12 7 6.2409 3.7158 3.7154 13 6 7.0570 4.4502 4.5582 14 7 7.9340 5.2945 4.0353 15 6 8.7250 6.0155 4.8128 16 6 8.6355 5.8708 6.1883 17 6 9.5242 6.6701 7.1060 18 8 8.7178 7.4761 7.9673 19 14 10.6374 7.7671 6.0919 20 6 7.7110 4.9747 6.7016 21 7 6.9465 4.2882 5.8686 22 6 5.4579 2.9682 0.0359 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8901 25 1 -0.3633 0.5138 -0.8899 26 1 1.8933 -0.5140 -0.8899 27 1 1.8934 -0.5139 0.8900 28 1 3.9689 4.6829 1.3577 29 1 3.2018 3.2003 2.0748 30 1 7.3583 3.6236 1.9428 31 1 6.1368 4.9171 1.9994 32 1 5.5971 3.0920 4.0859 33 1 9.4351 6.7050 4.3808 34 1 10.1309 5.9918 7.7058 35 1 8.1505 8.1050 7.5005 36 1 9.8220 8.6751 5.2458 37 1 11.5195 8.5604 6.9853 38 1 7.6158 4.8387 7.7687 39 1 5.9225 2.0701 -0.3711 40 1 5.8860 3.8861 -0.3670 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_16501618_12175864.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:38:30 Heat of formation + Delta-G solvation = -70.382467 kcal Electronic energy + Delta-G solvation = -25599.714232 eV Core-core repulsion = 21525.481799 eV Total energy + Delta-G solvation = -4074.232433 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 312.132 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -48.90267 -42.11089 -41.81968 -39.33463 -38.27231 -37.57529 -36.56028 -34.76437 -32.87795 -32.60292 -29.72361 -27.15228 -26.78436 -26.04188 -25.37989 -23.78596 -23.08778 -22.35409 -20.63399 -19.62473 -18.77511 -18.72398 -18.20291 -17.81756 -17.43559 -17.01273 -16.90220 -16.64388 -16.32175 -16.09992 -15.78848 -15.53879 -15.22214 -15.08383 -14.65273 -14.55255 -14.51112 -14.04030 -13.99313 -13.70557 -13.38566 -13.16140 -13.06953 -12.93077 -12.66157 -12.51097 -12.28219 -11.93691 -11.75381 -11.62427 -11.61159 -11.54671 -11.47108 -11.25059 -10.69630 -10.08644 -9.16592 -4.88879 0.02930 0.12083 1.04755 1.33369 1.55577 1.62533 1.70725 2.00530 2.76518 2.94699 3.02492 3.10681 3.28452 3.32049 3.42597 3.51506 3.65890 3.70136 3.77924 3.83212 3.92151 4.00055 4.23633 4.26592 4.34411 4.38531 4.58917 4.59978 4.65599 4.67256 4.71023 4.74317 4.83276 4.85078 4.87327 5.08989 5.14044 5.20521 5.40744 5.68620 5.93961 6.30161 6.50888 6.63650 7.21047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.055 3.945 3 O -0.360 6.360 4 C 0.467 3.533 5 O -0.529 6.529 6 C -0.114 4.114 7 H 0.157 0.843 8 C -0.124 4.124 9 C 0.063 3.937 10 F -0.203 7.203 11 C 0.137 3.863 12 N -0.696 5.696 13 C 0.553 3.447 14 N -0.572 5.572 15 C 0.196 3.804 16 C -0.283 4.283 17 C -0.058 4.058 18 O -0.547 6.547 19 Si 0.762 3.238 20 C 0.212 3.788 21 N -0.594 5.594 22 C -0.123 4.123 23 H 0.096 0.904 24 H 0.068 0.932 25 H 0.071 0.929 26 H 0.068 0.932 27 H 0.062 0.938 28 H 0.153 0.847 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.111 0.889 32 H 0.415 0.585 33 H 0.192 0.808 34 H 0.130 0.870 35 H 0.386 0.614 36 H -0.276 1.276 37 H -0.301 1.301 38 H 0.181 0.819 39 H 0.079 0.921 40 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.610 4.249 -3.664 5.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.019 4.019 3 O -0.277 6.277 4 C 0.311 3.689 5 O -0.418 6.418 6 C -0.133 4.133 7 H 0.175 0.825 8 C -0.162 4.162 9 C 0.045 3.955 10 F -0.183 7.183 11 C 0.013 3.987 12 N -0.333 5.333 13 C 0.196 3.804 14 N -0.295 5.295 15 C 0.029 3.971 16 C -0.291 4.291 17 C -0.169 4.169 18 O -0.355 6.355 19 Si 0.666 3.334 20 C 0.045 3.955 21 N -0.316 5.316 22 C -0.161 4.161 23 H 0.114 0.886 24 H 0.087 0.913 25 H 0.090 0.910 26 H 0.086 0.914 27 H 0.080 0.920 28 H 0.171 0.829 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.129 0.871 32 H 0.252 0.748 33 H 0.208 0.792 34 H 0.147 0.853 35 H 0.235 0.765 36 H -0.202 1.202 37 H -0.229 1.229 38 H 0.198 0.802 39 H 0.097 0.903 40 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -0.494 3.803 -4.233 5.712 hybrid contribution -0.801 -0.104 1.316 1.544 sum -1.295 3.700 -2.917 4.886 Atomic orbital electron populations 1.21823 0.90500 1.04289 1.03808 1.23229 0.97007 0.79369 1.02259 1.86490 1.24165 1.33383 1.83645 1.23765 0.80665 0.92921 0.71523 1.90691 1.61079 1.44195 1.45858 1.22156 0.97881 0.90046 1.03224 0.82519 1.23711 0.94674 1.03946 0.93821 1.22558 0.98484 0.79044 0.95443 1.92879 1.97387 1.41190 1.86888 1.21847 0.99218 1.00276 0.77346 1.44049 1.39842 1.44252 1.05136 1.19538 0.87510 0.87584 0.85720 1.67964 1.09570 1.11317 1.40660 1.23231 0.92231 0.92149 0.89484 1.21719 1.05184 1.05631 0.96595 1.24896 0.96559 0.97912 0.97492 1.86589 1.58672 1.53960 1.36287 0.94268 0.79292 0.80603 0.79225 1.23133 0.86167 0.86064 1.00152 1.67981 1.30299 1.30104 1.03245 1.23648 0.93321 1.06918 0.92192 0.88584 0.91320 0.90970 0.91358 0.91979 0.82908 0.90250 0.90364 0.87059 0.74755 0.79161 0.85270 0.76493 1.20191 1.22903 0.80198 0.90259 0.82427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.39 10.29 71.98 0.74 1.13 16 2 C 0.05 0.14 6.19 71.98 0.45 0.59 16 3 O -0.36 -1.61 10.22 -51.44 -0.53 -2.14 16 4 C 0.47 2.43 6.90 71.24 0.49 2.92 16 5 O -0.53 -6.58 14.56 21.98 0.32 -6.26 16 6 C -0.11 0.46 4.45 -11.01 -0.05 0.41 16 7 H 0.16 -1.58 8.14 -2.39 -0.02 -1.60 16 8 C -0.12 0.74 7.11 31.12 0.22 0.96 16 9 C 0.06 -0.11 1.73 -10.26 -0.02 -0.13 16 10 F -0.20 -1.57 14.97 44.97 0.67 -0.90 16 11 C 0.14 -0.36 5.40 86.38 0.47 0.10 16 12 N -0.70 -1.71 5.60 -351.04 -1.97 -3.68 16 13 C 0.55 3.03 8.43 261.48 2.20 5.23 16 14 N -0.57 -1.85 9.59 -197.98 -1.90 -3.75 16 15 C 0.20 -0.19 9.92 84.71 0.84 0.65 16 16 C -0.28 0.31 5.40 -19.69 -0.11 0.21 16 17 C -0.06 0.21 2.85 71.23 0.20 0.41 16 18 O -0.55 0.23 12.79 -148.98 -1.90 -1.67 16 19 Si 0.76 -3.85 29.87 68.60 2.05 -1.80 16 20 C 0.21 0.50 10.92 84.71 0.93 1.42 16 21 N -0.59 -4.00 10.46 -197.98 -2.07 -6.07 16 22 C -0.12 0.60 6.93 31.12 0.22 0.82 16 23 H 0.10 -0.52 8.14 -2.39 -0.02 -0.54 16 24 H 0.07 -0.18 8.14 -2.38 -0.02 -0.19 16 25 H 0.07 -0.23 8.14 -2.39 -0.02 -0.25 16 26 H 0.07 0.19 8.13 -2.39 -0.02 0.17 16 27 H 0.06 0.25 8.13 -2.39 -0.02 0.23 16 28 H 0.15 -1.90 7.90 -2.39 -0.02 -1.92 16 29 H 0.08 -0.24 8.10 -2.39 -0.02 -0.26 16 30 H 0.08 -0.11 8.14 -2.38 -0.02 -0.13 16 31 H 0.11 -0.75 7.84 -2.39 -0.02 -0.77 16 32 H 0.41 1.39 8.14 -92.71 -0.75 0.64 16 33 H 0.19 -1.33 5.04 -2.91 -0.01 -1.34 16 34 H 0.13 -0.69 7.96 -2.39 -0.02 -0.71 16 35 H 0.39 -2.19 8.70 -74.05 -0.64 -2.84 16 36 H -0.28 0.52 7.11 99.48 0.71 1.23 16 37 H -0.30 -0.97 7.11 99.48 0.71 -0.26 16 38 H 0.18 -0.17 8.06 -2.91 -0.02 -0.20 16 39 H 0.08 0.06 7.42 -2.39 -0.02 0.04 16 40 H 0.16 -2.00 8.10 -2.39 -0.02 -2.02 16 Total: 0.00 -23.27 343.01 0.99 -22.29 By element: Atomic # 1 Polarization: -10.47 SS G_CDS: -0.27 Total: -10.74 kcal Atomic # 6 Polarization: 8.14 SS G_CDS: 6.58 Total: 14.72 kcal Atomic # 7 Polarization: -7.56 SS G_CDS: -5.93 Total: -13.50 kcal Atomic # 8 Polarization: -7.95 SS G_CDS: -2.11 Total: -10.06 kcal Atomic # 9 Polarization: -1.57 SS G_CDS: 0.67 Total: -0.90 kcal Atomic # 14 Polarization: -3.85 SS G_CDS: 2.05 Total: -1.80 kcal Total: -23.27 0.99 -22.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16501618_12175864.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.096 kcal (2) G-P(sol) polarization free energy of solvation -23.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds