Wall clock time and date at job start Mon Mar 8 2021 07:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86300 * 109.47112 * 2 1 4 4 C 1.50702 * 109.47221 * 120.00048 * 2 1 3 5 5 C 1.38608 * 120.71982 * 65.00468 * 4 2 1 6 6 N 1.32272 * 119.19709 * 180.02562 * 5 4 2 7 7 C 1.32491 * 120.74142 * 359.97438 * 6 5 4 8 8 N 1.38401 * 119.21719 * 179.97438 * 7 6 5 9 9 C 1.46507 * 120.00017 * 180.02562 * 8 7 6 10 10 H 1.08992 * 112.90438 * 336.25466 * 9 8 7 11 11 C 1.53778 * 113.61127 * 107.50857 * 9 8 7 12 12 C 1.53781 * 87.08476 * 89.11679 * 11 9 8 13 13 H 1.08995 * 113.68824 * 270.87391 * 12 11 9 14 14 C 1.53003 * 113.61564 * 139.97782 * 12 11 9 15 15 O 1.42900 * 109.46808 * 87.50402 * 14 12 11 16 16 C 1.35905 * 116.99657 * 179.97438 * 15 14 12 17 17 C 1.38737 * 120.05306 * 179.97438 * 16 15 14 18 18 C 1.38141 * 119.94079 * 179.97438 * 17 16 15 19 19 C 1.38269 * 120.05690 * 359.97438 * 18 17 16 20 20 C 1.38263 * 120.11156 * 0.27879 * 19 18 17 21 21 C 1.38143 * 120.05579 * 359.44992 * 20 19 18 22 22 C 1.53781 * 87.07967 * 25.43001 * 12 11 9 23 23 N 1.32495 * 121.56676 * 0.28469 * 7 6 5 24 24 C 1.32276 * 120.73847 * 359.43301 * 23 7 6 25 25 H 0.96702 * 113.99942 * 299.99748 * 1 2 3 26 26 H 1.09006 * 109.47297 * 240.00221 * 2 1 3 27 27 H 1.48493 * 110.00187 * 299.99988 * 3 2 1 28 28 H 1.48498 * 109.99727 * 61.32173 * 3 2 1 29 29 H 1.08005 * 120.40116 * 359.97438 * 5 4 2 30 30 H 0.97006 * 120.00387 * 0.02562 * 8 7 6 31 31 H 1.09000 * 113.61701 * 334.56201 * 11 9 8 32 32 H 1.09004 * 113.61456 * 203.66884 * 11 9 8 33 33 H 1.09002 * 109.46910 * 327.50417 * 14 12 11 34 34 H 1.08999 * 109.47085 * 207.50172 * 14 12 11 35 35 H 1.07999 * 120.02397 * 359.97438 * 17 16 15 36 36 H 1.07998 * 119.97174 * 180.02562 * 18 17 16 37 37 H 1.08002 * 119.94064 * 179.97438 * 19 18 17 38 38 H 1.08001 * 119.97271 * 179.71681 * 20 19 18 39 39 H 1.08006 * 120.03125 * 180.27333 * 21 20 19 40 40 H 1.09005 * 113.61399 * 89.11416 * 22 12 11 41 41 H 1.08998 * 113.61448 * 219.93464 * 22 12 11 42 42 H 1.07992 * 120.40638 * 180.25859 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.6927 -2.0634 1.4139 6 7 2.1470 -2.6566 2.5054 7 6 2.8232 -1.9724 3.4165 8 7 3.2837 -2.6246 4.5470 9 6 4.0328 -1.8846 5.5656 10 1 4.5136 -0.9893 5.1717 11 6 3.2368 -1.6386 6.8582 12 6 3.7839 -2.9859 7.3584 13 1 3.1593 -3.8384 7.0915 14 6 4.1767 -2.9770 8.8371 15 8 3.0360 -3.3003 9.6349 16 6 3.2151 -3.3360 10.9816 17 6 2.1502 -3.6426 11.8163 18 6 2.3350 -3.6788 13.1848 19 6 3.5801 -3.4103 13.7228 20 6 4.6418 -3.0994 12.8934 21 6 4.4635 -3.0674 11.5239 22 6 4.9704 -2.7690 6.4045 23 7 3.0640 -0.6773 3.2739 24 6 2.6424 -0.0251 2.2031 25 1 -0.3933 0.4417 0.7651 26 1 1.7924 -0.5138 -0.8900 27 1 1.5615 2.4679 -1.2084 28 1 1.5879 2.4585 1.2243 29 1 1.1417 -2.6264 0.6750 30 1 3.1104 -3.5717 4.6650 31 1 2.1568 -1.6331 6.7115 32 1 3.5912 -0.7829 7.4330 33 1 4.5421 -1.9870 9.1100 34 1 4.9611 -3.7140 9.0092 35 1 1.1776 -3.8527 11.3964 36 1 1.5065 -3.9177 13.8350 37 1 3.7224 -3.4387 14.7931 38 1 5.6123 -2.8856 13.3163 39 1 5.2942 -2.8288 10.8761 40 1 5.7987 -2.2223 6.8553 41 1 5.2908 -3.6764 5.8927 42 1 2.8452 1.0296 2.0904 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_16534228_12175864.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:08:07 Heat of formation + Delta-G solvation = 54.779234 kcal Electronic energy + Delta-G solvation = -24434.170071 eV Core-core repulsion = 20768.822803 eV Total energy + Delta-G solvation = -3665.347268 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.17243 -41.24630 -40.25280 -38.30948 -38.02443 -35.51940 -34.74981 -32.33511 -31.94631 -30.97706 -29.08527 -26.79680 -26.53622 -25.94695 -24.37698 -23.45228 -23.18497 -22.52891 -20.50179 -19.57911 -19.18947 -18.54526 -18.09032 -17.30185 -16.93446 -16.79420 -16.58102 -16.35933 -16.11742 -15.90983 -15.77556 -15.43878 -15.01808 -14.87748 -14.56498 -14.36002 -14.15698 -14.01567 -13.54268 -13.49805 -13.20093 -13.14697 -12.52706 -12.28512 -12.18017 -12.06762 -11.93514 -11.81356 -11.73725 -11.65947 -11.20311 -11.14071 -10.70326 -10.06535 -9.98591 -9.19643 -9.13969 -4.90882 0.02377 0.12026 0.36011 0.46343 1.31769 1.60321 1.75991 1.98240 2.17794 2.75119 2.81833 3.12545 3.41904 3.44429 3.52083 3.61793 3.67517 3.75170 3.81015 3.82633 3.89740 3.97490 4.20431 4.21771 4.27830 4.31121 4.43972 4.48423 4.55039 4.63584 4.66120 4.70703 4.74937 4.75398 4.83526 5.00035 5.04772 5.05516 5.14441 5.32482 5.36234 5.45655 5.58477 5.77603 5.83973 6.01961 6.36661 6.44827 6.48258 7.24101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.547 6.547 2 C -0.057 4.057 3 Si 0.761 3.239 4 C -0.283 4.283 5 C 0.213 3.787 6 N -0.591 5.591 7 C 0.554 3.446 8 N -0.676 5.676 9 C 0.135 3.865 10 H 0.108 0.892 11 C -0.145 4.145 12 C -0.107 4.107 13 H 0.092 0.908 14 C 0.066 3.934 15 O -0.333 6.333 16 C 0.111 3.889 17 C -0.176 4.176 18 C -0.087 4.087 19 C -0.169 4.169 20 C -0.088 4.088 21 C -0.217 4.217 22 C -0.120 4.120 23 N -0.575 5.575 24 C 0.192 3.808 25 H 0.385 0.615 26 H 0.132 0.868 27 H -0.300 1.300 28 H -0.279 1.279 29 H 0.183 0.817 30 H 0.417 0.583 31 H 0.051 0.949 32 H 0.102 0.898 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.129 0.871 36 H 0.146 0.854 37 H 0.142 0.858 38 H 0.145 0.855 39 H 0.143 0.857 40 H 0.120 0.880 41 H 0.086 0.914 42 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.023 1.274 0.823 5.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.355 6.355 2 C -0.168 4.168 3 Si 0.666 3.334 4 C -0.291 4.291 5 C 0.045 3.955 6 N -0.313 5.313 7 C 0.198 3.802 8 N -0.311 5.311 9 C 0.029 3.971 10 H 0.126 0.874 11 C -0.184 4.184 12 C -0.125 4.125 13 H 0.110 0.890 14 C -0.009 4.009 15 O -0.247 6.247 16 C 0.066 3.934 17 C -0.194 4.194 18 C -0.105 4.105 19 C -0.187 4.187 20 C -0.106 4.106 21 C -0.236 4.236 22 C -0.158 4.158 23 N -0.298 5.298 24 C 0.025 3.975 25 H 0.234 0.766 26 H 0.150 0.850 27 H -0.227 1.227 28 H -0.206 1.206 29 H 0.200 0.800 30 H 0.255 0.745 31 H 0.070 0.930 32 H 0.120 0.880 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.147 0.853 36 H 0.164 0.836 37 H 0.159 0.841 38 H 0.163 0.837 39 H 0.161 0.839 40 H 0.138 0.862 41 H 0.105 0.895 42 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 5.185 1.362 1.144 5.482 hybrid contribution -1.677 -0.179 -0.156 1.694 sum 3.509 1.183 0.988 3.832 Atomic orbital electron populations 1.86590 1.18577 1.80257 1.50099 1.24880 0.83160 1.11297 0.97433 0.94244 0.90142 0.72117 0.76857 1.21696 1.08509 0.97258 1.01661 1.23170 0.89120 0.91744 0.91420 1.67992 1.17340 1.40785 1.05225 1.19600 0.87387 0.85934 0.87305 1.43911 1.58068 1.11968 1.17197 1.21837 0.92632 0.96174 0.86412 0.87412 1.23549 1.00021 0.97777 0.97021 1.22599 0.99308 0.98922 0.91714 0.88990 1.23033 0.87055 1.01237 0.89569 1.86059 1.38650 1.85265 1.14735 1.19271 0.94579 0.96594 0.82957 1.20699 0.98526 1.06694 0.93500 1.21289 0.98400 0.96981 0.93852 1.21431 0.93130 1.02931 1.01194 1.21328 1.00053 0.96490 0.92692 1.21515 0.96628 1.08212 0.97246 1.23328 0.96422 1.00957 0.95136 1.67962 1.27755 1.08179 1.25859 1.23235 0.87800 1.00331 0.86123 0.76593 0.84991 1.22744 1.20592 0.79982 0.74474 0.92968 0.88012 0.90635 0.90783 0.85342 0.83644 0.84056 0.83717 0.83883 0.86201 0.89531 0.79654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.19 12.85 -148.98 -1.91 -2.10 16 2 C -0.06 0.18 2.83 71.24 0.20 0.38 16 3 Si 0.76 -3.26 29.95 68.60 2.05 -1.20 16 4 C -0.28 0.17 5.36 -19.69 -0.11 0.07 16 5 C 0.21 0.47 10.99 84.71 0.93 1.40 16 6 N -0.59 -3.66 10.46 -197.99 -2.07 -5.73 16 7 C 0.55 3.07 8.42 261.49 2.20 5.27 16 8 N -0.68 -0.99 5.41 -327.93 -1.77 -2.76 16 9 C 0.14 -0.26 4.33 45.52 0.20 -0.06 16 10 H 0.11 -0.07 7.37 -2.39 -0.02 -0.09 16 11 C -0.14 0.16 7.43 31.12 0.23 0.39 16 12 C -0.11 0.31 3.89 -10.27 -0.04 0.27 16 13 H 0.09 -0.08 8.14 -2.39 -0.02 -0.10 16 14 C 0.07 -0.11 4.58 71.98 0.33 0.22 16 15 O -0.33 -1.83 10.14 -92.48 -0.94 -2.77 16 16 C 0.11 0.64 6.69 22.51 0.15 0.79 16 17 C -0.18 -0.96 9.99 22.37 0.22 -0.73 16 18 C -0.09 -0.22 10.04 22.25 0.22 0.00 16 19 C -0.17 -0.23 10.04 22.28 0.22 -0.01 16 20 C -0.09 -0.10 10.04 22.25 0.22 0.13 16 21 C -0.22 -0.52 9.04 22.37 0.20 -0.32 16 22 C -0.12 0.76 7.39 31.12 0.23 0.99 16 23 N -0.57 -2.60 9.13 -198.00 -1.81 -4.40 16 24 C 0.19 0.05 9.92 84.71 0.84 0.89 16 25 H 0.38 -1.74 8.70 -74.06 -0.64 -2.39 16 26 H 0.13 -0.73 7.96 -2.38 -0.02 -0.75 16 27 H -0.30 -1.11 7.11 99.48 0.71 -0.41 16 28 H -0.28 0.18 7.02 99.48 0.70 0.88 16 29 H 0.18 -0.28 8.06 -2.91 -0.02 -0.31 16 30 H 0.42 -0.04 8.82 -92.70 -0.82 -0.86 16 31 H 0.05 0.18 8.14 -2.39 -0.02 0.16 16 32 H 0.10 -0.28 7.90 -2.38 -0.02 -0.30 16 33 H 0.08 -0.29 7.37 -2.39 -0.02 -0.31 16 34 H 0.07 -0.27 7.66 -2.39 -0.02 -0.29 16 35 H 0.13 0.55 8.06 -2.91 -0.02 0.53 16 36 H 0.15 -0.28 8.06 -2.91 -0.02 -0.30 16 37 H 0.14 -0.40 8.06 -2.91 -0.02 -0.42 16 38 H 0.15 -0.53 8.06 -2.91 -0.02 -0.55 16 39 H 0.14 -0.29 6.30 -2.91 -0.02 -0.31 16 40 H 0.12 -1.15 8.10 -2.38 -0.02 -1.17 16 41 H 0.09 -0.59 8.14 -2.39 -0.02 -0.60 16 42 H 0.19 -0.92 5.01 -2.91 -0.01 -0.93 16 Total: 0.00 -17.24 352.94 -0.56 -17.80 By element: Atomic # 1 Polarization: -8.14 SS G_CDS: -0.37 Total: -8.51 kcal Atomic # 6 Polarization: 3.41 SS G_CDS: 6.27 Total: 9.68 kcal Atomic # 7 Polarization: -7.24 SS G_CDS: -5.65 Total: -12.89 kcal Atomic # 8 Polarization: -2.02 SS G_CDS: -2.85 Total: -4.87 kcal Atomic # 14 Polarization: -3.26 SS G_CDS: 2.05 Total: -1.20 kcal Total: -17.24 -0.56 -17.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16534228_12175864.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.575 kcal (2) G-P(sol) polarization free energy of solvation -17.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds