Wall clock time and date at job start Mon Mar 8 2021 07:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33326 * 125.95736 * 2 1 4 4 C 1.50696 * 122.70738 * 359.96907 * 3 2 1 5 5 O 1.42903 * 109.47131 * 329.72878 * 4 3 2 6 6 Si 1.86305 * 109.47185 * 209.73419 * 4 3 2 7 7 N 1.32121 * 114.58065 * 179.69547 * 3 2 1 8 8 C 1.29687 * 116.86620 * 0.27190 * 7 3 2 9 9 N 1.38610 * 124.94721 * 179.97438 * 8 7 3 10 10 C 1.46497 * 119.99672 * 179.97438 * 9 8 7 11 11 H 1.08997 * 112.85348 * 25.33762 * 10 9 8 12 12 C 1.53783 * 113.61303 * 156.52852 * 10 9 8 13 13 C 1.53778 * 87.08041 * 89.11707 * 12 10 9 14 14 H 1.09003 * 113.61587 * 270.88303 * 13 12 10 15 15 C 1.52994 * 113.61574 * 140.06838 * 13 12 10 16 16 O 1.42903 * 109.47230 * 175.00081 * 15 13 12 17 17 C 1.35902 * 117.00032 * 180.02562 * 16 15 13 18 18 C 1.38728 * 120.05660 * 359.72084 * 17 16 15 19 19 C 1.38147 * 119.94616 * 179.74996 * 18 17 16 20 20 C 1.38267 * 120.05101 * 0.50477 * 19 18 17 21 21 C 1.38258 * 120.11391 * 359.77040 * 20 19 18 22 22 C 1.38143 * 120.05543 * 359.97438 * 21 20 19 23 23 C 1.53777 * 113.61594 * 254.13226 * 10 9 8 24 24 S 1.70964 * 110.09953 * 359.97438 * 8 7 3 25 25 H 1.09001 * 109.46966 * 89.99456 * 1 2 3 26 26 H 1.08993 * 109.47394 * 210.00456 * 1 2 3 27 27 H 1.09008 * 109.46529 * 330.00106 * 1 2 3 28 28 H 1.08999 * 109.47358 * 89.73238 * 4 3 2 29 29 H 0.96700 * 114.00311 * 300.00591 * 5 4 3 30 30 H 1.48497 * 110.00233 * 179.97438 * 6 4 3 31 31 H 1.48492 * 109.99800 * 301.31995 * 6 4 3 32 32 H 0.96997 * 120.00174 * 359.97438 * 9 8 7 33 33 H 1.08998 * 113.61797 * 203.66137 * 12 10 9 34 34 H 1.09005 * 113.61368 * 334.57200 * 12 10 9 35 35 H 1.08998 * 109.47018 * 294.99527 * 15 13 12 36 36 H 1.09001 * 109.47576 * 54.99906 * 15 13 12 37 37 H 1.08003 * 120.02972 * 359.97438 * 18 17 16 38 38 H 1.07996 * 119.97327 * 180.27978 * 19 18 17 39 39 H 1.08005 * 119.94203 * 179.74813 * 20 19 18 40 40 H 1.08002 * 119.97157 * 179.97438 * 21 20 19 41 41 H 1.08003 * 120.02842 * 180.02562 * 22 21 20 42 42 H 1.09002 * 113.61217 * 25.43784 * 23 10 9 43 43 H 1.08999 * 113.61661 * 156.33270 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2899 1.0792 0.0000 4 6 1.7416 2.4829 -0.0007 5 8 0.4847 2.5030 -0.6804 6 14 2.9367 3.6160 -0.8717 7 7 3.5851 0.8186 0.0064 8 6 3.9315 -0.4312 0.0063 9 7 5.2384 -0.8929 0.0119 10 6 5.5064 -2.3331 0.0117 11 1 4.6933 -2.9149 -0.4225 12 6 6.8923 -2.7018 -0.5434 13 6 7.4210 -2.5496 0.8926 14 1 7.7451 -1.5371 1.1336 15 6 8.4512 -3.6116 1.2822 16 8 8.9667 -3.3206 2.5828 17 6 9.9000 -4.1734 3.0815 18 6 10.3069 -5.2709 2.3369 19 6 11.2596 -6.1334 2.8438 20 6 11.7998 -5.9093 4.0967 21 6 11.3918 -4.8194 4.8432 22 6 10.4433 -3.9511 4.3385 23 6 5.9915 -2.8696 1.3688 24 16 2.5412 -1.4261 -0.0018 25 1 -0.3633 0.0001 -1.0277 26 1 -0.3634 -0.8899 0.5139 27 1 -0.3633 0.8901 0.5139 28 1 1.6045 2.8199 1.0268 29 1 0.5313 2.2144 -1.6022 30 1 2.4073 5.0034 -0.8797 31 1 4.2572 3.5797 -0.1934 32 1 5.9755 -0.2624 0.0160 33 1 6.9529 -3.7209 -0.9252 34 1 7.2950 -1.9640 -1.2374 35 1 7.9761 -4.5926 1.2908 36 1 9.2668 -3.6092 0.5591 37 1 9.8819 -5.4489 1.3601 38 1 11.5799 -6.9854 2.2626 39 1 12.5415 -6.5870 4.4931 40 1 11.8150 -4.6468 5.8218 41 1 10.1253 -3.0996 4.9218 42 1 5.6673 -2.2674 2.2175 43 1 5.8060 -3.9346 1.5089 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_16534228_15704122.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:08:19 Heat of formation + Delta-G solvation = 35.123723 kcal Electronic energy + Delta-G solvation = -24912.658561 eV Core-core repulsion = 21245.499505 eV Total energy + Delta-G solvation = -3667.159057 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 333.119 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.46110 -40.98753 -40.37669 -38.27430 -37.69066 -35.34104 -32.58958 -32.00005 -31.06359 -29.58458 -28.70504 -27.01549 -25.64585 -24.71136 -24.23548 -23.39482 -22.70519 -20.91990 -20.54203 -19.23627 -18.82169 -17.86732 -17.67876 -17.17610 -16.97170 -16.73318 -16.58696 -16.46454 -15.84398 -15.58236 -15.30807 -15.12246 -14.99297 -14.37726 -14.36185 -14.12522 -13.94097 -13.76221 -13.68230 -13.56634 -13.30973 -13.26668 -12.71973 -12.56907 -12.34498 -12.22721 -12.18109 -11.90781 -11.78806 -11.72320 -11.41402 -11.04923 -10.53529 -10.27722 -9.96829 -9.96169 -9.16564 -8.62658 -4.83077 0.03872 0.19614 0.38171 0.49938 0.81096 1.41126 1.78841 1.91262 1.96115 2.09953 2.27178 2.84500 3.12356 3.26297 3.37653 3.47739 3.56820 3.57257 3.84973 3.90300 4.02848 4.15004 4.17684 4.19229 4.23928 4.31250 4.37218 4.43760 4.45384 4.47906 4.53914 4.56851 4.69330 4.77374 4.79543 4.83584 4.92385 4.98777 5.04935 5.16148 5.33652 5.33877 5.46092 5.60284 5.61188 5.81279 6.24042 6.43879 6.52355 6.97689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.237 4.237 3 C 0.066 3.934 4 C -0.034 4.034 5 O -0.536 6.536 6 Si 0.716 3.284 7 N -0.544 5.544 8 C 0.321 3.679 9 N -0.677 5.677 10 C 0.127 3.873 11 H 0.099 0.901 12 C -0.132 4.132 13 C -0.109 4.109 14 H 0.103 0.897 15 C 0.069 3.931 16 O -0.313 6.313 17 C 0.129 3.871 18 C -0.211 4.211 19 C -0.080 4.080 20 C -0.159 4.159 21 C -0.080 4.080 22 C -0.154 4.154 23 C -0.149 4.149 24 S 0.101 5.899 25 H 0.071 0.929 26 H 0.058 0.942 27 H 0.091 0.909 28 H 0.120 0.880 29 H 0.379 0.621 30 H -0.262 1.262 31 H -0.252 1.252 32 H 0.413 0.587 33 H 0.104 0.896 34 H 0.085 0.915 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.127 0.873 38 H 0.125 0.875 39 H 0.124 0.876 40 H 0.130 0.870 41 H 0.130 0.870 42 H 0.079 0.921 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.944 -4.497 -3.433 5.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.360 4.360 3 C -0.064 4.064 4 C -0.147 4.147 5 O -0.340 6.340 6 Si 0.617 3.383 7 N -0.270 5.270 8 C -0.050 4.050 9 N -0.317 5.317 10 C 0.020 3.980 11 H 0.117 0.883 12 C -0.170 4.170 13 C -0.128 4.128 14 H 0.122 0.878 15 C -0.006 4.006 16 O -0.227 6.227 17 C 0.084 3.916 18 C -0.229 4.229 19 C -0.098 4.098 20 C -0.177 4.177 21 C -0.098 4.098 22 C -0.172 4.172 23 C -0.188 4.188 24 S 0.350 5.650 25 H 0.090 0.910 26 H 0.077 0.923 27 H 0.110 0.890 28 H 0.137 0.863 29 H 0.226 0.774 30 H -0.188 1.188 31 H -0.177 1.177 32 H 0.252 0.748 33 H 0.122 0.878 34 H 0.103 0.897 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.144 0.856 38 H 0.143 0.857 39 H 0.142 0.858 40 H 0.148 0.852 41 H 0.148 0.852 42 H 0.098 0.902 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.435 -4.271 -2.718 5.262 hybrid contribution 0.071 0.433 0.481 0.651 sum 1.506 -3.838 -2.238 4.691 Atomic orbital electron populations 1.20214 0.86362 1.03162 1.02750 1.25162 1.01355 0.92722 1.16755 1.20126 0.86701 0.97173 1.02420 1.24513 0.92562 0.95543 1.02070 1.86506 1.28959 1.89685 1.28887 0.94097 0.77596 0.76461 0.90186 1.65960 1.17328 1.16647 1.27086 1.23231 0.91628 0.91522 0.98642 1.43563 1.01934 1.06098 1.80138 1.21905 0.98299 0.79994 0.97800 0.88321 1.23318 0.94061 1.03682 0.95939 1.22663 0.93801 1.00039 0.96269 0.87846 1.22835 0.96412 0.98615 0.82733 1.86083 1.53574 1.49348 1.33689 1.19026 0.89637 0.89579 0.93397 1.21266 1.02979 0.97237 1.01458 1.20996 0.95033 0.98270 0.95545 1.21125 1.02177 0.99047 0.95379 1.21028 0.95483 0.93679 0.99624 1.20493 1.00088 1.02271 0.94364 1.23677 0.95028 1.02367 0.97770 1.83965 0.96486 1.10553 1.74012 0.91014 0.92259 0.89036 0.86275 0.77359 1.18762 1.17656 0.74824 0.87761 0.89668 0.91606 0.91662 0.85557 0.85702 0.85764 0.85235 0.85214 0.90184 0.88450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 0.01 8.95 36.01 0.32 0.33 16 2 C -0.24 -0.37 6.50 -36.02 -0.23 -0.60 16 3 C 0.07 0.16 5.92 -84.19 -0.50 -0.34 16 4 C -0.03 -0.04 2.82 36.00 0.10 0.06 16 5 O -0.54 -0.07 9.91 -35.23 -0.35 -0.42 16 6 Si 0.72 0.85 32.09 -169.99 -5.45 -4.61 16 7 N -0.54 -1.80 8.95 -11.36 -0.10 -1.90 16 8 C 0.32 0.55 8.24 -87.68 -0.72 -0.17 16 9 N -0.68 0.38 5.42 -55.00 -0.30 0.08 16 10 C 0.13 -0.32 4.28 -67.12 -0.29 -0.60 16 11 H 0.10 -0.27 7.11 -51.93 -0.37 -0.64 16 12 C -0.13 0.52 7.38 -25.92 -0.19 0.33 16 13 C -0.11 0.26 3.90 -89.67 -0.35 -0.09 16 14 H 0.10 -0.16 8.14 -51.93 -0.42 -0.58 16 15 C 0.07 -0.10 4.58 37.15 0.17 0.07 16 16 O -0.31 -0.56 10.14 -19.43 -0.20 -0.75 16 17 C 0.13 0.27 6.69 -39.22 -0.26 0.01 16 18 C -0.21 -0.19 9.04 -39.43 -0.36 -0.55 16 19 C -0.08 -0.05 10.04 -39.60 -0.40 -0.44 16 20 C -0.16 -0.10 10.04 -39.56 -0.40 -0.50 16 21 C -0.08 -0.07 10.04 -39.61 -0.40 -0.47 16 22 C -0.15 -0.29 9.99 -39.43 -0.39 -0.68 16 23 C -0.15 0.32 7.45 -25.78 -0.19 0.12 16 24 S 0.10 0.07 21.71 -107.50 -2.33 -2.26 16 25 H 0.07 -0.10 8.14 -51.93 -0.42 -0.52 16 26 H 0.06 -0.02 8.14 -51.93 -0.42 -0.45 16 27 H 0.09 0.06 6.63 -51.92 -0.34 -0.29 16 28 H 0.12 0.21 7.96 -51.93 -0.41 -0.20 16 29 H 0.38 -1.24 8.68 45.56 0.40 -0.85 16 30 H -0.26 -0.94 7.11 56.52 0.40 -0.54 16 31 H -0.25 -1.19 7.11 56.52 0.40 -0.79 16 32 H 0.41 -0.40 8.83 -40.82 -0.36 -0.76 16 33 H 0.10 -0.54 8.10 -51.93 -0.42 -0.96 16 34 H 0.08 -0.34 8.14 -51.93 -0.42 -0.76 16 35 H 0.07 -0.16 7.36 -51.93 -0.38 -0.54 16 36 H 0.07 -0.14 7.67 -51.93 -0.40 -0.54 16 37 H 0.13 -0.14 6.30 -52.48 -0.33 -0.47 16 38 H 0.13 -0.18 8.06 -52.49 -0.42 -0.60 16 39 H 0.12 -0.14 8.06 -52.48 -0.42 -0.56 16 40 H 0.13 -0.15 8.06 -52.49 -0.42 -0.57 16 41 H 0.13 0.13 8.06 -52.48 -0.42 -0.29 16 42 H 0.08 -0.03 8.14 -51.93 -0.42 -0.45 16 43 H 0.10 -0.29 7.91 -51.93 -0.41 -0.70 16 LS Contribution 367.78 15.07 5.54 5.54 Total: 0.00 -6.61 367.78 -13.31 -19.92 By element: Atomic # 1 Polarization: -6.03 SS G_CDS: -6.04 Total: -12.07 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: -4.09 Total: -3.54 kcal Atomic # 7 Polarization: -1.42 SS G_CDS: -0.40 Total: -1.82 kcal Atomic # 8 Polarization: -0.63 SS G_CDS: -0.55 Total: -1.18 kcal Atomic # 14 Polarization: 0.85 SS G_CDS: -5.45 Total: -4.61 kcal Atomic # 16 Polarization: 0.07 SS G_CDS: -2.33 Total: -2.26 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -6.61 -13.31 -19.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16534228_15704122.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.045 kcal (2) G-P(sol) polarization free energy of solvation -6.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds