Wall clock time and date at job start Mon Mar 8 2021 07:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33326 * 125.95736 * 2 1 4 4 C 1.50696 * 122.70738 * 359.96907 * 3 2 1 5 5 O 1.42903 * 109.47131 * 329.72878 * 4 3 2 6 6 Si 1.86305 * 109.47185 * 209.73419 * 4 3 2 7 7 N 1.32121 * 114.58065 * 179.69547 * 3 2 1 8 8 C 1.29687 * 116.86620 * 0.27190 * 7 3 2 9 9 N 1.38610 * 124.94721 * 179.97438 * 8 7 3 10 10 C 1.46497 * 119.99672 * 179.97438 * 9 8 7 11 11 H 1.08997 * 112.85348 * 25.33762 * 10 9 8 12 12 C 1.53783 * 113.61303 * 156.52852 * 10 9 8 13 13 C 1.53778 * 87.08041 * 89.11707 * 12 10 9 14 14 H 1.09003 * 113.61587 * 270.88303 * 13 12 10 15 15 C 1.52994 * 113.61574 * 140.06838 * 13 12 10 16 16 O 1.42903 * 109.47230 * 175.00081 * 15 13 12 17 17 C 1.35902 * 117.00032 * 180.02562 * 16 15 13 18 18 C 1.38728 * 120.05660 * 359.72084 * 17 16 15 19 19 C 1.38147 * 119.94616 * 179.74996 * 18 17 16 20 20 C 1.38267 * 120.05101 * 0.50477 * 19 18 17 21 21 C 1.38258 * 120.11391 * 359.77040 * 20 19 18 22 22 C 1.38143 * 120.05543 * 359.97438 * 21 20 19 23 23 C 1.53777 * 113.61594 * 254.13226 * 10 9 8 24 24 S 1.70964 * 110.09953 * 359.97438 * 8 7 3 25 25 H 1.09001 * 109.46966 * 89.99456 * 1 2 3 26 26 H 1.08993 * 109.47394 * 210.00456 * 1 2 3 27 27 H 1.09008 * 109.46529 * 330.00106 * 1 2 3 28 28 H 1.08999 * 109.47358 * 89.73238 * 4 3 2 29 29 H 0.96700 * 114.00311 * 300.00591 * 5 4 3 30 30 H 1.48497 * 110.00233 * 179.97438 * 6 4 3 31 31 H 1.48492 * 109.99800 * 301.31995 * 6 4 3 32 32 H 0.96997 * 120.00174 * 359.97438 * 9 8 7 33 33 H 1.08998 * 113.61797 * 203.66137 * 12 10 9 34 34 H 1.09005 * 113.61368 * 334.57200 * 12 10 9 35 35 H 1.08998 * 109.47018 * 294.99527 * 15 13 12 36 36 H 1.09001 * 109.47576 * 54.99906 * 15 13 12 37 37 H 1.08003 * 120.02972 * 359.97438 * 18 17 16 38 38 H 1.07996 * 119.97327 * 180.27978 * 19 18 17 39 39 H 1.08005 * 119.94203 * 179.74813 * 20 19 18 40 40 H 1.08002 * 119.97157 * 179.97438 * 21 20 19 41 41 H 1.08003 * 120.02842 * 180.02562 * 22 21 20 42 42 H 1.09002 * 113.61217 * 25.43784 * 23 10 9 43 43 H 1.08999 * 113.61661 * 156.33270 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2899 1.0792 0.0000 4 6 1.7416 2.4829 -0.0007 5 8 0.4847 2.5030 -0.6804 6 14 2.9367 3.6160 -0.8717 7 7 3.5851 0.8186 0.0064 8 6 3.9315 -0.4312 0.0063 9 7 5.2384 -0.8929 0.0119 10 6 5.5064 -2.3331 0.0117 11 1 4.6933 -2.9149 -0.4225 12 6 6.8923 -2.7018 -0.5434 13 6 7.4210 -2.5496 0.8926 14 1 7.7451 -1.5371 1.1336 15 6 8.4512 -3.6116 1.2822 16 8 8.9667 -3.3206 2.5828 17 6 9.9000 -4.1734 3.0815 18 6 10.3069 -5.2709 2.3369 19 6 11.2596 -6.1334 2.8438 20 6 11.7998 -5.9093 4.0967 21 6 11.3918 -4.8194 4.8432 22 6 10.4433 -3.9511 4.3385 23 6 5.9915 -2.8696 1.3688 24 16 2.5412 -1.4261 -0.0018 25 1 -0.3633 0.0001 -1.0277 26 1 -0.3634 -0.8899 0.5139 27 1 -0.3633 0.8901 0.5139 28 1 1.6045 2.8199 1.0268 29 1 0.5313 2.2144 -1.6022 30 1 2.4073 5.0034 -0.8797 31 1 4.2572 3.5797 -0.1934 32 1 5.9755 -0.2624 0.0160 33 1 6.9529 -3.7209 -0.9252 34 1 7.2950 -1.9640 -1.2374 35 1 7.9761 -4.5926 1.2908 36 1 9.2668 -3.6092 0.5591 37 1 9.8819 -5.4489 1.3601 38 1 11.5799 -6.9854 2.2626 39 1 12.5415 -6.5870 4.4931 40 1 11.8150 -4.6468 5.8218 41 1 10.1253 -3.0996 4.9218 42 1 5.6673 -2.2674 2.2175 43 1 5.8060 -3.9346 1.5089 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_16534228_15704122.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:08:18 Heat of formation + Delta-G solvation = 40.929738 kcal Electronic energy + Delta-G solvation = -24912.406794 eV Core-core repulsion = 21245.499505 eV Total energy + Delta-G solvation = -3666.907289 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 333.119 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.40607 -41.04875 -40.30612 -38.27524 -37.71530 -35.31304 -32.60116 -32.00958 -31.05286 -29.58296 -28.68847 -26.79509 -25.68515 -24.67950 -24.24335 -23.40603 -22.67178 -20.85235 -20.52225 -19.23941 -18.82631 -17.89503 -17.65474 -17.13119 -16.94504 -16.73286 -16.63161 -16.40973 -15.75983 -15.68406 -15.32611 -15.09635 -14.92790 -14.37184 -14.36440 -14.25680 -13.87341 -13.81380 -13.51968 -13.47912 -13.34478 -13.17803 -12.76074 -12.54477 -12.42331 -12.13096 -12.09580 -12.07841 -11.73809 -11.65582 -11.25424 -11.01891 -10.63116 -10.34703 -10.04058 -9.99266 -9.20301 -8.65588 -4.97957 -0.03948 0.14188 0.35297 0.45632 0.73553 1.28970 1.71347 1.81654 1.86879 2.10365 2.16795 2.81128 3.31909 3.36788 3.45858 3.53767 3.66855 3.73168 3.87774 3.95511 4.15438 4.19081 4.25547 4.28151 4.31850 4.38116 4.45114 4.48294 4.49407 4.56940 4.68780 4.72144 4.74909 4.84453 4.89253 4.96808 5.00252 5.04614 5.08360 5.20376 5.31840 5.35631 5.44951 5.57932 5.69062 5.83156 6.25418 6.44154 6.67030 6.92875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.245 4.245 3 C 0.052 3.948 4 C -0.030 4.030 5 O -0.539 6.539 6 Si 0.792 3.208 7 N -0.574 5.574 8 C 0.310 3.690 9 N -0.674 5.674 10 C 0.123 3.877 11 H 0.107 0.893 12 C -0.116 4.116 13 C -0.109 4.109 14 H 0.090 0.910 15 C 0.065 3.935 16 O -0.333 6.333 17 C 0.112 3.888 18 C -0.217 4.217 19 C -0.088 4.088 20 C -0.169 4.169 21 C -0.088 4.088 22 C -0.176 4.176 23 C -0.149 4.149 24 S 0.126 5.874 25 H 0.087 0.913 26 H 0.062 0.938 27 H 0.084 0.916 28 H 0.112 0.888 29 H 0.395 0.605 30 H -0.293 1.293 31 H -0.304 1.304 32 H 0.413 0.587 33 H 0.126 0.874 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.145 0.855 38 H 0.145 0.855 39 H 0.141 0.859 40 H 0.145 0.855 41 H 0.128 0.872 42 H 0.057 0.943 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.748 -6.189 -4.563 7.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.368 4.368 3 C -0.078 4.078 4 C -0.144 4.144 5 O -0.346 6.346 6 Si 0.698 3.302 7 N -0.302 5.302 8 C -0.062 4.062 9 N -0.314 5.314 10 C 0.018 3.982 11 H 0.124 0.876 12 C -0.154 4.154 13 C -0.127 4.127 14 H 0.108 0.892 15 C -0.010 4.010 16 O -0.248 6.248 17 C 0.067 3.933 18 C -0.235 4.235 19 C -0.105 4.105 20 C -0.187 4.187 21 C -0.106 4.106 22 C -0.195 4.195 23 C -0.188 4.188 24 S 0.375 5.625 25 H 0.106 0.894 26 H 0.081 0.919 27 H 0.103 0.897 28 H 0.129 0.871 29 H 0.245 0.755 30 H -0.221 1.221 31 H -0.231 1.231 32 H 0.251 0.749 33 H 0.144 0.856 34 H 0.108 0.892 35 H 0.096 0.904 36 H 0.092 0.908 37 H 0.162 0.838 38 H 0.163 0.837 39 H 0.159 0.841 40 H 0.163 0.837 41 H 0.146 0.854 42 H 0.076 0.924 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 1.230 -5.991 -3.874 7.239 hybrid contribution 0.179 0.943 0.875 1.299 sum 1.409 -5.048 -2.998 6.038 Atomic orbital electron populations 1.20236 0.85266 1.02970 1.03701 1.25435 1.02223 0.92953 1.16225 1.20235 0.86676 0.97723 1.03190 1.24418 0.92913 0.95267 1.01756 1.86476 1.28123 1.89741 1.30227 0.93226 0.73861 0.74158 0.88907 1.65960 1.18053 1.17751 1.28451 1.23494 0.92675 0.91572 0.98412 1.43749 1.01273 1.06999 1.79356 1.22047 0.99459 0.78909 0.97828 0.87557 1.23297 0.92258 1.04967 0.94836 1.22631 0.93377 0.99177 0.97540 0.89195 1.23036 0.96837 0.99402 0.81689 1.86061 1.53696 1.49819 1.35192 1.19249 0.90080 0.90229 0.93786 1.21517 1.03046 0.96809 1.02157 1.21334 0.94709 0.98754 0.95753 1.21430 1.02499 0.99189 0.95582 1.21284 0.95226 0.93625 1.00426 1.20696 1.01023 1.02868 0.94903 1.23687 0.95278 1.02694 0.97118 1.83784 0.95463 1.09622 1.73658 0.89436 0.91869 0.89748 0.87073 0.75504 1.22123 1.23124 0.74851 0.85626 0.89249 0.90363 0.90796 0.83753 0.83685 0.84092 0.83719 0.85430 0.92365 0.87254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 0.05 8.95 71.24 0.64 0.69 16 2 C -0.25 -0.75 6.50 24.57 0.16 -0.59 16 3 C 0.05 0.28 5.92 41.40 0.24 0.52 16 4 C -0.03 -0.10 2.82 71.23 0.20 0.10 16 5 O -0.54 -0.02 9.91 -148.98 -1.48 -1.50 16 6 Si 0.79 2.93 32.09 68.60 2.20 5.13 16 7 N -0.57 -4.42 8.95 -189.87 -1.70 -6.12 16 8 C 0.31 1.23 8.24 179.32 1.48 2.71 16 9 N -0.67 0.38 5.42 -327.91 -1.78 -1.40 16 10 C 0.12 -0.66 4.28 45.52 0.19 -0.47 16 11 H 0.11 -0.70 7.11 -2.39 -0.02 -0.72 16 12 C -0.12 1.03 7.38 31.12 0.23 1.26 16 13 C -0.11 0.51 3.90 -10.18 -0.04 0.47 16 14 H 0.09 -0.17 8.14 -2.39 -0.02 -0.19 16 15 C 0.06 -0.21 4.58 71.98 0.33 0.12 16 16 O -0.33 -1.50 10.14 -92.45 -0.94 -2.44 16 17 C 0.11 0.56 6.69 22.50 0.15 0.71 16 18 C -0.22 -0.33 9.04 22.37 0.20 -0.13 16 19 C -0.09 -0.04 10.04 22.25 0.22 0.18 16 20 C -0.17 -0.16 10.04 22.28 0.22 0.06 16 21 C -0.09 -0.19 10.04 22.25 0.22 0.03 16 22 C -0.18 -0.89 9.99 22.37 0.22 -0.66 16 23 C -0.15 0.60 7.45 31.21 0.23 0.84 16 24 S 0.13 0.15 21.71 -56.49 -1.23 -1.08 16 25 H 0.09 -0.35 8.14 -2.39 -0.02 -0.37 16 26 H 0.06 -0.10 8.14 -2.39 -0.02 -0.12 16 27 H 0.08 0.08 6.63 -2.38 -0.02 0.07 16 28 H 0.11 0.53 7.96 -2.39 -0.02 0.51 16 29 H 0.39 -2.91 8.68 -74.06 -0.64 -3.55 16 30 H -0.29 -2.54 7.11 99.48 0.71 -1.83 16 31 H -0.30 -3.71 7.11 99.48 0.71 -3.00 16 32 H 0.41 -0.35 8.83 -92.71 -0.82 -1.17 16 33 H 0.13 -1.60 8.10 -2.39 -0.02 -1.62 16 34 H 0.09 -0.81 8.14 -2.38 -0.02 -0.83 16 35 H 0.08 -0.46 7.36 -2.39 -0.02 -0.47 16 36 H 0.07 -0.37 7.67 -2.39 -0.02 -0.39 16 37 H 0.14 -0.46 6.30 -2.91 -0.02 -0.48 16 38 H 0.15 -0.62 8.06 -2.91 -0.02 -0.65 16 39 H 0.14 -0.44 8.06 -2.91 -0.02 -0.47 16 40 H 0.15 -0.30 8.06 -2.91 -0.02 -0.32 16 41 H 0.13 0.52 8.06 -2.91 -0.02 0.50 16 42 H 0.06 0.04 8.14 -2.39 -0.02 0.02 16 43 H 0.11 -0.71 7.91 -2.39 -0.02 -0.73 16 Total: 0.00 -16.99 367.78 -0.38 -17.38 By element: Atomic # 1 Polarization: -15.44 SS G_CDS: -0.38 Total: -15.82 kcal Atomic # 6 Polarization: 0.93 SS G_CDS: 4.91 Total: 5.85 kcal Atomic # 7 Polarization: -4.04 SS G_CDS: -3.48 Total: -7.52 kcal Atomic # 8 Polarization: -1.53 SS G_CDS: -2.41 Total: -3.94 kcal Atomic # 14 Polarization: 2.93 SS G_CDS: 2.20 Total: 5.13 kcal Atomic # 16 Polarization: 0.15 SS G_CDS: -1.23 Total: -1.08 kcal Total: -16.99 -0.38 -17.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16534228_15704122.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.308 kcal (2) G-P(sol) polarization free energy of solvation -16.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds