Wall clock time and date at job start Mon Mar 8 2021 07:08:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42907 * 1 3 3 Si 1.86294 * 109.47102 * 2 1 4 4 C 1.50696 * 109.47330 * 120.00292 * 2 1 3 5 5 C 1.37985 * 120.32876 * 244.99622 * 4 2 1 6 6 N 1.32008 * 120.90030 * 179.97438 * 5 4 2 7 7 C 1.32336 * 121.64859 * 0.02562 * 6 5 4 8 8 N 1.39140 * 119.71540 * 179.97438 * 7 6 5 9 9 C 1.46506 * 120.00046 * 359.97438 * 8 7 6 10 10 H 1.08992 * 112.90684 * 336.24929 * 9 8 7 11 11 C 1.54049 * 113.61276 * 107.62018 * 9 8 7 12 12 C 1.53781 * 87.08031 * 89.07129 * 11 9 8 13 13 H 1.08999 * 113.61181 * 270.87794 * 12 11 9 14 14 C 1.52991 * 113.61611 * 139.97702 * 12 11 9 15 15 O 1.42901 * 109.47409 * 87.50203 * 14 12 11 16 16 C 1.35901 * 117.00080 * 180.02562 * 15 14 12 17 17 C 1.38732 * 120.05986 * 359.72518 * 16 15 14 18 18 C 1.38140 * 119.94714 * 179.74357 * 17 16 15 19 19 C 1.38273 * 120.05363 * 0.51195 * 18 17 16 20 20 C 1.38260 * 120.11168 * 359.76507 * 19 18 17 21 21 C 1.38147 * 120.05933 * 359.97438 * 20 19 18 22 22 C 1.53781 * 87.08070 * 25.42738 * 12 11 9 23 23 C 1.39336 * 120.56400 * 0.24810 * 7 6 5 24 24 F 1.35101 * 120.47210 * 179.72564 * 23 7 6 25 25 C 1.38447 * 119.05729 * 359.50000 * 23 7 6 26 26 H 0.96699 * 113.99634 * 299.99661 * 1 2 3 27 27 H 1.09003 * 109.46872 * 240.00397 * 2 1 3 28 28 H 1.48500 * 110.00244 * 178.68373 * 3 2 1 29 29 H 1.48502 * 110.00446 * 300.00109 * 3 2 1 30 30 H 1.08006 * 119.54472 * 0.02562 * 5 4 2 31 31 H 0.97002 * 120.00066 * 179.97438 * 8 7 6 32 32 H 1.09005 * 113.62125 * 334.52173 * 11 9 8 33 33 H 1.09003 * 113.61268 * 203.61961 * 11 9 8 34 34 H 1.08997 * 109.47550 * 207.50008 * 14 12 11 35 35 H 1.09002 * 109.47334 * 327.50277 * 14 12 11 36 36 H 1.08005 * 120.02231 * 359.97438 * 17 16 15 37 37 H 1.07992 * 119.97303 * 180.27400 * 18 17 16 38 38 H 1.07998 * 119.94563 * 179.74426 * 19 18 17 39 39 H 1.07998 * 119.97380 * 180.02562 * 20 19 18 40 40 H 1.07999 * 120.03473 * 179.97438 * 21 20 19 41 41 H 1.09002 * 113.61445 * 89.11830 * 22 12 11 42 42 H 1.09002 * 113.61408 * 219.93560 * 22 12 11 43 43 H 1.08004 * 120.75779 * 180.24494 * 25 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 2.6383 -0.0203 2.1937 6 7 3.0832 -0.6312 3.2760 7 6 2.8722 -1.9214 3.4813 8 7 3.3599 -2.5247 4.6364 9 6 4.1037 -1.7322 5.6188 10 1 4.5621 -0.8427 5.1868 11 6 3.3155 -1.4561 6.9132 12 6 3.8965 -2.7729 7.4547 13 1 3.2865 -3.6464 7.2249 14 6 4.3052 -2.7026 8.9273 15 8 3.1806 -3.0208 9.7496 16 6 3.3749 -3.0034 11.0945 17 6 4.6239 -2.6921 11.6122 18 6 4.8175 -2.6699 12.9797 19 6 3.7704 -2.9679 13.8323 20 6 2.5262 -3.2840 13.3188 21 6 2.3260 -3.3023 11.9520 22 6 5.0676 -2.5656 6.4798 23 6 2.1709 -2.6820 2.5480 24 9 1.9614 -4.0002 2.7569 25 6 1.6877 -2.0667 1.4058 26 1 -0.3933 0.4417 0.7651 27 1 1.7924 -0.5138 -0.8901 28 1 3.5346 1.7703 0.0321 29 1 1.5615 2.4679 -1.2085 30 1 2.8295 1.0344 2.0606 31 1 3.2073 -3.4701 4.7913 32 1 2.2339 -1.4785 6.7791 33 1 3.6578 -0.5731 7.4529 34 1 5.1069 -3.4165 9.1164 35 1 4.6525 -1.6961 9.1605 36 1 5.4431 -2.4638 10.9465 37 1 5.7883 -2.4234 13.3833 38 1 3.9248 -2.9540 14.9011 39 1 1.7099 -3.5160 13.9867 40 1 1.3541 -3.5497 11.5513 41 1 5.8891 -1.9860 6.9011 42 1 5.4016 -3.4840 5.9970 43 1 1.1371 -2.6292 0.6663 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_16534228_17656566.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:08:23 Heat of formation + Delta-G solvation = -13.110566 kcal Electronic energy + Delta-G solvation = -26780.344717 eV Core-core repulsion = 22708.025461 eV Total energy + Delta-G solvation = -4072.319255 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 331.137 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -49.88154 -41.61550 -41.13702 -40.21438 -38.25597 -37.87744 -35.47782 -33.21995 -32.05023 -31.53958 -30.81661 -29.05289 -26.87349 -26.48539 -25.36643 -24.12096 -23.30593 -22.99049 -22.51633 -20.50295 -19.48923 -19.14176 -18.50614 -18.21346 -17.53956 -17.29078 -16.97635 -16.91006 -16.75017 -16.32877 -16.14884 -15.98965 -15.64394 -15.38287 -15.13671 -14.91716 -14.77641 -14.34781 -14.33066 -14.06007 -14.03538 -13.68693 -13.57080 -13.39536 -13.19022 -12.63534 -12.52584 -12.22644 -12.14003 -12.08594 -11.85465 -11.68519 -11.27574 -11.19302 -10.69250 -10.68303 -10.47567 -9.93129 -9.12844 -8.80231 -5.10232 -0.08880 0.09859 0.41322 0.53218 1.21079 1.57210 1.87535 1.92435 2.15852 2.52643 2.87701 3.02417 3.18465 3.36471 3.39653 3.40639 3.57151 3.69368 3.72236 3.81670 3.89871 3.94249 3.96996 4.13984 4.22477 4.26781 4.31642 4.38071 4.44112 4.48117 4.55865 4.56211 4.59806 4.67213 4.70169 4.76561 4.92962 4.96335 4.97820 5.07524 5.11571 5.37294 5.40728 5.49230 5.63172 5.84762 5.93776 6.13696 6.48184 6.51311 6.92208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.540 6.540 2 C -0.055 4.055 3 Si 0.684 3.316 4 C -0.209 4.209 5 C 0.149 3.851 6 N -0.510 5.510 7 C 0.393 3.607 8 N -0.700 5.700 9 C 0.134 3.866 10 H 0.112 0.888 11 C -0.145 4.145 12 C -0.111 4.111 13 H 0.100 0.900 14 C 0.070 3.930 15 O -0.313 6.313 16 C 0.129 3.871 17 C -0.211 4.211 18 C -0.080 4.080 19 C -0.160 4.160 20 C -0.080 4.080 21 C -0.154 4.154 22 C -0.139 4.139 23 C -0.020 4.020 24 F -0.133 7.133 25 C -0.037 4.037 26 H 0.380 0.620 27 H 0.115 0.885 28 H -0.254 1.254 29 H -0.251 1.251 30 H 0.164 0.836 31 H 0.413 0.587 32 H 0.075 0.925 33 H 0.093 0.907 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.126 0.874 37 H 0.125 0.875 38 H 0.124 0.876 39 H 0.130 0.870 40 H 0.130 0.870 41 H 0.100 0.900 42 H 0.079 0.921 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.485 2.143 2.066 3.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.346 6.346 2 C -0.167 4.167 3 Si 0.586 3.414 4 C -0.215 4.215 5 C -0.008 4.008 6 N -0.227 5.227 7 C 0.155 3.845 8 N -0.332 5.332 9 C 0.028 3.972 10 H 0.130 0.870 11 C -0.184 4.184 12 C -0.130 4.130 13 H 0.118 0.882 14 C -0.006 4.006 15 O -0.227 6.227 16 C 0.084 3.916 17 C -0.229 4.229 18 C -0.098 4.098 19 C -0.178 4.178 20 C -0.098 4.098 21 C -0.172 4.172 22 C -0.177 4.177 23 C -0.046 4.046 24 F -0.112 7.112 25 C -0.063 4.063 26 H 0.227 0.773 27 H 0.133 0.867 28 H -0.178 1.178 29 H -0.176 1.176 30 H 0.180 0.820 31 H 0.250 0.750 32 H 0.094 0.906 33 H 0.112 0.888 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.144 0.856 37 H 0.143 0.857 38 H 0.142 0.858 39 H 0.147 0.853 40 H 0.148 0.852 41 H 0.119 0.881 42 H 0.097 0.903 43 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 2.454 2.918 1.721 4.183 hybrid contribution -0.229 -1.780 -0.560 1.880 sum 2.225 1.138 1.161 2.756 Atomic orbital electron populations 1.86518 1.17052 1.81683 1.49300 1.24865 0.85250 1.09930 0.96614 0.94878 0.81152 0.77593 0.87815 1.20941 1.05718 0.94642 1.00158 1.22321 0.91708 0.99220 0.87562 1.67275 1.24827 1.07272 1.23316 1.18376 0.90452 0.88978 0.86703 1.44226 1.58883 1.11775 1.18302 1.21814 0.92351 0.95236 0.87773 0.87046 1.23594 1.01341 0.97114 0.96330 1.22642 0.98721 1.00048 0.91571 0.88155 1.22851 0.87881 1.00443 0.89383 1.86082 1.37778 1.84779 1.14051 1.19040 0.93857 0.95902 0.82799 1.21271 0.96584 1.08326 0.96769 1.20992 0.99111 0.97110 0.92633 1.21119 0.93364 1.03234 1.00068 1.21024 0.97419 0.97220 0.94167 1.20493 0.98492 1.05765 0.92489 1.23375 0.96826 1.01323 0.96182 1.17997 1.08666 0.79488 0.98445 1.91497 1.93724 1.31049 1.94945 1.21293 0.95467 0.94447 0.95138 0.77278 0.86730 1.17840 1.17583 0.81984 0.74973 0.90647 0.88828 0.91834 0.91631 0.85568 0.85733 0.85792 0.85255 0.85212 0.88143 0.90275 0.83291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.30 12.84 -35.23 -0.45 -0.15 16 2 C -0.06 0.06 2.82 36.00 0.10 0.17 16 3 Si 0.68 -1.41 29.83 -169.99 -5.07 -6.48 16 4 C -0.21 0.09 5.36 -104.47 -0.56 -0.47 16 5 C 0.15 -0.06 9.84 -17.57 -0.17 -0.23 16 6 N -0.51 -0.65 9.13 -12.37 -0.11 -0.76 16 7 C 0.39 0.53 7.49 -154.86 -1.16 -0.62 16 8 N -0.70 0.13 5.42 -52.92 -0.29 -0.15 16 9 C 0.13 -0.17 4.37 -66.97 -0.29 -0.46 16 10 H 0.11 -0.06 7.41 -51.93 -0.38 -0.44 16 11 C -0.14 0.17 7.44 -25.78 -0.19 -0.02 16 12 C -0.11 0.18 3.89 -89.81 -0.35 -0.17 16 13 H 0.10 -0.10 8.14 -51.93 -0.42 -0.52 16 14 C 0.07 -0.05 4.58 37.15 0.17 0.12 16 15 O -0.31 -0.68 10.14 -19.43 -0.20 -0.88 16 16 C 0.13 0.31 6.69 -39.21 -0.26 0.05 16 17 C -0.21 -0.27 9.04 -39.43 -0.36 -0.62 16 18 C -0.08 -0.07 10.04 -39.60 -0.40 -0.47 16 19 C -0.16 -0.13 10.04 -39.56 -0.40 -0.53 16 20 C -0.08 -0.08 10.04 -39.61 -0.40 -0.48 16 21 C -0.15 -0.31 9.99 -39.43 -0.39 -0.71 16 22 C -0.14 0.37 7.38 -25.92 -0.19 0.18 16 23 C -0.02 -0.03 7.35 -39.10 -0.29 -0.32 16 24 F -0.13 -0.30 16.65 2.25 0.04 -0.26 16 25 C -0.04 -0.02 9.82 -39.26 -0.39 -0.41 16 26 H 0.38 -1.65 8.70 45.56 0.40 -1.25 16 27 H 0.12 -0.10 7.96 -51.93 -0.41 -0.51 16 28 H -0.25 -0.05 7.11 56.52 0.40 0.35 16 29 H -0.25 -0.33 7.11 56.52 0.40 0.07 16 30 H 0.16 -0.47 4.91 -52.48 -0.26 -0.72 16 31 H 0.41 -0.42 8.17 -40.82 -0.33 -0.75 16 32 H 0.07 0.02 8.14 -51.93 -0.42 -0.40 16 33 H 0.09 -0.16 7.90 -51.93 -0.41 -0.57 16 34 H 0.06 -0.09 7.65 -51.93 -0.40 -0.49 16 35 H 0.07 -0.11 7.37 -51.93 -0.38 -0.49 16 36 H 0.13 -0.07 6.30 -52.48 -0.33 -0.40 16 37 H 0.12 -0.14 8.06 -52.49 -0.42 -0.57 16 38 H 0.12 -0.12 8.06 -52.49 -0.42 -0.54 16 39 H 0.13 -0.14 8.06 -52.49 -0.42 -0.56 16 40 H 0.13 0.14 8.06 -52.49 -0.42 -0.28 16 41 H 0.10 -0.37 8.10 -51.93 -0.42 -0.79 16 42 H 0.08 -0.21 8.14 -51.93 -0.42 -0.64 16 43 H 0.15 -0.03 8.06 -52.48 -0.42 -0.46 16 LS Contribution 363.57 15.07 5.48 5.48 Total: 0.00 -6.54 363.57 -11.64 -18.18 By element: Atomic # 1 Polarization: -4.46 SS G_CDS: -5.51 Total: -9.97 kcal Atomic # 6 Polarization: 0.53 SS G_CDS: -5.52 Total: -5.00 kcal Atomic # 7 Polarization: -0.51 SS G_CDS: -0.40 Total: -0.91 kcal Atomic # 8 Polarization: -0.38 SS G_CDS: -0.65 Total: -1.03 kcal Atomic # 9 Polarization: -0.30 SS G_CDS: 0.04 Total: -0.26 kcal Atomic # 14 Polarization: -1.41 SS G_CDS: -5.07 Total: -6.48 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -6.54 -11.64 -18.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16534228_17656566.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.067 kcal (2) G-P(sol) polarization free energy of solvation -6.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds