Wall clock time and date at job start Mon Mar 8 2021 07:08:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42907 * 1 3 3 Si 1.86294 * 109.47102 * 2 1 4 4 C 1.50696 * 109.47330 * 120.00292 * 2 1 3 5 5 C 1.37985 * 120.32876 * 244.99622 * 4 2 1 6 6 N 1.32008 * 120.90030 * 179.97438 * 5 4 2 7 7 C 1.32336 * 121.64859 * 0.02562 * 6 5 4 8 8 N 1.39140 * 119.71540 * 179.97438 * 7 6 5 9 9 C 1.46506 * 120.00046 * 359.97438 * 8 7 6 10 10 H 1.08992 * 112.90684 * 336.24929 * 9 8 7 11 11 C 1.54049 * 113.61276 * 107.62018 * 9 8 7 12 12 C 1.53781 * 87.08031 * 89.07129 * 11 9 8 13 13 H 1.08999 * 113.61181 * 270.87794 * 12 11 9 14 14 C 1.52991 * 113.61611 * 139.97702 * 12 11 9 15 15 O 1.42901 * 109.47409 * 87.50203 * 14 12 11 16 16 C 1.35901 * 117.00080 * 180.02562 * 15 14 12 17 17 C 1.38732 * 120.05986 * 359.72518 * 16 15 14 18 18 C 1.38140 * 119.94714 * 179.74357 * 17 16 15 19 19 C 1.38273 * 120.05363 * 0.51195 * 18 17 16 20 20 C 1.38260 * 120.11168 * 359.76507 * 19 18 17 21 21 C 1.38147 * 120.05933 * 359.97438 * 20 19 18 22 22 C 1.53781 * 87.08070 * 25.42738 * 12 11 9 23 23 C 1.39336 * 120.56400 * 0.24810 * 7 6 5 24 24 F 1.35101 * 120.47210 * 179.72564 * 23 7 6 25 25 C 1.38447 * 119.05729 * 359.50000 * 23 7 6 26 26 H 0.96699 * 113.99634 * 299.99661 * 1 2 3 27 27 H 1.09003 * 109.46872 * 240.00397 * 2 1 3 28 28 H 1.48500 * 110.00244 * 178.68373 * 3 2 1 29 29 H 1.48502 * 110.00446 * 300.00109 * 3 2 1 30 30 H 1.08006 * 119.54472 * 0.02562 * 5 4 2 31 31 H 0.97002 * 120.00066 * 179.97438 * 8 7 6 32 32 H 1.09005 * 113.62125 * 334.52173 * 11 9 8 33 33 H 1.09003 * 113.61268 * 203.61961 * 11 9 8 34 34 H 1.08997 * 109.47550 * 207.50008 * 14 12 11 35 35 H 1.09002 * 109.47334 * 327.50277 * 14 12 11 36 36 H 1.08005 * 120.02231 * 359.97438 * 17 16 15 37 37 H 1.07992 * 119.97303 * 180.27400 * 18 17 16 38 38 H 1.07998 * 119.94563 * 179.74426 * 19 18 17 39 39 H 1.07998 * 119.97380 * 180.02562 * 20 19 18 40 40 H 1.07999 * 120.03473 * 179.97438 * 21 20 19 41 41 H 1.09002 * 113.61445 * 89.11830 * 22 12 11 42 42 H 1.09002 * 113.61408 * 219.93560 * 22 12 11 43 43 H 1.08004 * 120.75779 * 180.24494 * 25 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 2.6383 -0.0203 2.1937 6 7 3.0832 -0.6312 3.2760 7 6 2.8722 -1.9214 3.4813 8 7 3.3599 -2.5247 4.6364 9 6 4.1037 -1.7322 5.6188 10 1 4.5621 -0.8427 5.1868 11 6 3.3155 -1.4561 6.9132 12 6 3.8965 -2.7729 7.4547 13 1 3.2865 -3.6464 7.2249 14 6 4.3052 -2.7026 8.9273 15 8 3.1806 -3.0208 9.7496 16 6 3.3749 -3.0034 11.0945 17 6 4.6239 -2.6921 11.6122 18 6 4.8175 -2.6699 12.9797 19 6 3.7704 -2.9679 13.8323 20 6 2.5262 -3.2840 13.3188 21 6 2.3260 -3.3023 11.9520 22 6 5.0676 -2.5656 6.4798 23 6 2.1709 -2.6820 2.5480 24 9 1.9614 -4.0002 2.7569 25 6 1.6877 -2.0667 1.4058 26 1 -0.3933 0.4417 0.7651 27 1 1.7924 -0.5138 -0.8901 28 1 3.5346 1.7703 0.0321 29 1 1.5615 2.4679 -1.2085 30 1 2.8295 1.0344 2.0606 31 1 3.2073 -3.4701 4.7913 32 1 2.2339 -1.4785 6.7791 33 1 3.6578 -0.5731 7.4529 34 1 5.1069 -3.4165 9.1164 35 1 4.6525 -1.6961 9.1605 36 1 5.4431 -2.4638 10.9465 37 1 5.7883 -2.4234 13.3833 38 1 3.9248 -2.9540 14.9011 39 1 1.7099 -3.5160 13.9867 40 1 1.3541 -3.5497 11.5513 41 1 5.8891 -1.9860 6.9011 42 1 5.4016 -3.4840 5.9970 43 1 1.1371 -2.6292 0.6663 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_16534228_17656566.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:08:22 Heat of formation + Delta-G solvation = -7.795392 kcal Electronic energy + Delta-G solvation = -26780.114234 eV Core-core repulsion = 22708.025461 eV Total energy + Delta-G solvation = -4072.088772 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 331.137 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -49.98941 -41.60058 -41.15212 -40.16400 -38.26422 -37.83355 -35.44617 -33.23735 -32.07059 -31.53544 -30.83230 -29.01741 -26.75670 -26.42898 -25.36173 -24.11617 -23.34028 -22.99087 -22.50027 -20.42101 -19.49060 -19.15809 -18.48381 -18.23748 -17.52737 -17.28086 -17.03794 -16.90951 -16.76546 -16.28800 -16.11765 -15.94407 -15.60334 -15.40275 -15.14294 -14.89457 -14.77913 -14.35759 -14.33283 -14.07590 -14.04511 -13.61158 -13.49095 -13.37766 -13.14241 -12.57671 -12.51835 -12.18278 -12.14988 -12.05449 -11.79043 -11.65463 -11.18256 -11.14368 -10.73387 -10.68334 -10.42020 -9.97822 -9.18786 -8.79898 -4.96875 -0.10897 0.07380 0.36773 0.47085 1.31948 1.67157 1.91426 2.00736 2.18105 2.51049 2.82584 2.99674 3.23127 3.45559 3.49242 3.52663 3.66622 3.77892 3.82241 3.84145 3.90277 3.96146 3.98864 4.21807 4.28213 4.31477 4.39428 4.44433 4.47129 4.49363 4.56000 4.68476 4.71206 4.73136 4.75977 4.83974 4.96492 5.03176 5.05543 5.06486 5.19274 5.33424 5.43882 5.46454 5.59264 5.84600 5.98106 6.15075 6.45275 6.78761 6.92011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.556 6.556 2 C -0.060 4.060 3 Si 0.775 3.225 4 C -0.206 4.206 5 C 0.150 3.850 6 N -0.523 5.523 7 C 0.384 3.616 8 N -0.699 5.699 9 C 0.132 3.868 10 H 0.107 0.893 11 C -0.142 4.142 12 C -0.108 4.108 13 H 0.091 0.909 14 C 0.066 3.934 15 O -0.332 6.332 16 C 0.111 3.889 17 C -0.218 4.218 18 C -0.088 4.088 19 C -0.169 4.169 20 C -0.087 4.087 21 C -0.175 4.175 22 C -0.125 4.125 23 C -0.039 4.039 24 F -0.142 7.142 25 C -0.041 4.041 26 H 0.396 0.604 27 H 0.111 0.889 28 H -0.279 1.279 29 H -0.297 1.297 30 H 0.187 0.813 31 H 0.415 0.585 32 H 0.056 0.944 33 H 0.101 0.899 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.142 0.858 37 H 0.144 0.856 38 H 0.141 0.859 39 H 0.146 0.854 40 H 0.130 0.870 41 H 0.117 0.883 42 H 0.082 0.918 43 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.350 2.804 2.670 4.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.364 6.364 2 C -0.170 4.170 3 Si 0.680 3.320 4 C -0.211 4.211 5 C -0.007 4.007 6 N -0.240 5.240 7 C 0.146 3.854 8 N -0.331 5.331 9 C 0.027 3.973 10 H 0.125 0.875 11 C -0.181 4.181 12 C -0.126 4.126 13 H 0.109 0.891 14 C -0.008 4.008 15 O -0.246 6.246 16 C 0.066 3.934 17 C -0.237 4.237 18 C -0.106 4.106 19 C -0.187 4.187 20 C -0.105 4.105 21 C -0.193 4.193 22 C -0.163 4.163 23 C -0.066 4.066 24 F -0.121 7.121 25 C -0.067 4.067 26 H 0.246 0.754 27 H 0.128 0.872 28 H -0.206 1.206 29 H -0.225 1.225 30 H 0.203 0.797 31 H 0.252 0.748 32 H 0.075 0.925 33 H 0.119 0.881 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.160 0.840 37 H 0.162 0.838 38 H 0.159 0.841 39 H 0.164 0.836 40 H 0.148 0.852 41 H 0.135 0.865 42 H 0.101 0.899 43 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 3.309 3.556 2.359 5.400 hybrid contribution -0.526 -1.960 -0.784 2.176 sum 2.783 1.596 1.575 3.574 Atomic orbital electron populations 1.86483 1.17260 1.82165 1.50526 1.25016 0.85210 1.10739 0.96058 0.93824 0.78046 0.74709 0.85415 1.21007 1.05514 0.94235 1.00394 1.22723 0.90850 1.00217 0.86936 1.67336 1.25406 1.07223 1.24046 1.18528 0.90570 0.89191 0.87105 1.44312 1.58679 1.11970 1.18105 1.21857 0.92624 0.95374 0.87469 0.87460 1.23579 1.00196 0.97727 0.96638 1.22588 0.99190 0.99379 0.91486 0.89106 1.23015 0.87443 1.01212 0.89162 1.86057 1.39249 1.85036 1.14269 1.19271 0.94535 0.96585 0.83004 1.21507 0.96624 1.08118 0.97405 1.21322 1.00070 0.96634 0.92571 1.21430 0.93276 1.02846 1.01130 1.21292 0.98271 0.96894 0.94035 1.20705 0.98752 1.06634 0.93235 1.23338 0.96541 1.01359 0.95044 1.18153 1.09832 0.79336 0.99234 1.91466 1.93914 1.31629 1.95072 1.21448 0.95307 0.95036 0.94931 0.75413 0.87168 1.20600 1.22509 0.79680 0.74760 0.92481 0.88051 0.91025 0.90621 0.83997 0.83782 0.84067 0.83598 0.85243 0.86463 0.89943 0.82901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.78 12.84 -148.98 -1.91 -1.13 16 2 C -0.06 0.15 2.82 71.23 0.20 0.35 16 3 Si 0.77 -3.51 29.83 68.60 2.05 -1.47 16 4 C -0.21 0.18 5.36 -19.76 -0.11 0.07 16 5 C 0.15 -0.17 9.84 84.61 0.83 0.66 16 6 N -0.52 -1.40 9.13 -193.04 -1.76 -3.16 16 7 C 0.38 1.33 7.49 133.08 1.00 2.33 16 8 N -0.70 -0.29 5.42 -321.35 -1.74 -2.03 16 9 C 0.13 -0.30 4.37 45.61 0.20 -0.10 16 10 H 0.11 -0.12 7.41 -2.39 -0.02 -0.14 16 11 C -0.14 0.26 7.44 31.21 0.23 0.50 16 12 C -0.11 0.31 3.89 -10.27 -0.04 0.27 16 13 H 0.09 -0.08 8.14 -2.39 -0.02 -0.10 16 14 C 0.07 -0.10 4.58 71.98 0.33 0.22 16 15 O -0.33 -1.75 10.14 -92.43 -0.94 -2.68 16 16 C 0.11 0.62 6.69 22.51 0.15 0.77 16 17 C -0.22 -0.52 9.04 22.36 0.20 -0.31 16 18 C -0.09 -0.09 10.04 22.25 0.22 0.13 16 19 C -0.17 -0.20 10.04 22.28 0.22 0.02 16 20 C -0.09 -0.19 10.04 22.25 0.22 0.03 16 21 C -0.17 -0.89 9.99 22.37 0.22 -0.67 16 22 C -0.12 0.74 7.38 31.12 0.23 0.97 16 23 C -0.04 -0.16 7.35 22.58 0.17 0.00 16 24 F -0.14 -0.83 16.65 44.97 0.75 -0.08 16 25 C -0.04 -0.08 9.82 22.48 0.22 0.15 16 26 H 0.40 -3.68 8.70 -74.06 -0.64 -4.33 16 27 H 0.11 -0.19 7.96 -2.39 -0.02 -0.20 16 28 H -0.28 0.04 7.11 99.48 0.71 0.74 16 29 H -0.30 -0.99 7.11 99.48 0.71 -0.28 16 30 H 0.19 -1.28 4.91 -2.91 -0.01 -1.29 16 31 H 0.41 -0.37 8.17 -92.71 -0.76 -1.13 16 32 H 0.06 0.12 8.14 -2.38 -0.02 0.10 16 33 H 0.10 -0.35 7.90 -2.39 -0.02 -0.37 16 34 H 0.07 -0.24 7.65 -2.39 -0.02 -0.26 16 35 H 0.08 -0.29 7.37 -2.39 -0.02 -0.30 16 36 H 0.14 -0.27 6.30 -2.91 -0.02 -0.29 16 37 H 0.14 -0.52 8.06 -2.91 -0.02 -0.54 16 38 H 0.14 -0.42 8.06 -2.91 -0.02 -0.44 16 39 H 0.15 -0.33 8.06 -2.91 -0.02 -0.35 16 40 H 0.13 0.50 8.06 -2.91 -0.02 0.47 16 41 H 0.12 -1.05 8.10 -2.39 -0.02 -1.07 16 42 H 0.08 -0.49 8.14 -2.39 -0.02 -0.51 16 43 H 0.15 0.05 8.06 -2.91 -0.02 0.03 16 Total: 0.00 -16.09 363.57 0.64 -15.44 By element: Atomic # 1 Polarization: -9.97 SS G_CDS: -0.31 Total: -10.27 kcal Atomic # 6 Polarization: 0.88 SS G_CDS: 4.51 Total: 5.39 kcal Atomic # 7 Polarization: -1.69 SS G_CDS: -3.50 Total: -5.19 kcal Atomic # 8 Polarization: -0.97 SS G_CDS: -2.85 Total: -3.82 kcal Atomic # 9 Polarization: -0.83 SS G_CDS: 0.75 Total: -0.08 kcal Atomic # 14 Polarization: -3.51 SS G_CDS: 2.05 Total: -1.47 kcal Total: -16.09 0.64 -15.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16534228_17656566.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.649 kcal (2) G-P(sol) polarization free energy of solvation -16.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds