Wall clock time and date at job start Mon Mar 8 2021 07:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81393 * 1 3 3 C 1.81402 * 103.00386 * 2 1 4 4 C 1.52998 * 109.47521 * 179.97438 * 3 2 1 5 5 H 1.08999 * 112.84509 * 43.80872 * 4 3 2 6 6 C 1.53779 * 113.61324 * 175.00078 * 4 3 2 7 7 C 1.53790 * 87.07934 * 140.06934 * 6 4 3 8 8 H 1.09001 * 113.61519 * 89.19972 * 7 6 4 9 9 N 1.46495 * 113.61079 * 220.01979 * 7 6 4 10 10 C 1.38409 * 119.99916 * 203.46978 * 9 7 6 11 11 N 1.32488 * 119.22005 * 179.97438 * 10 9 7 12 12 C 1.32275 * 120.74087 * 179.97438 * 11 10 9 13 13 C 1.38602 * 119.19883 * 0.02562 * 12 11 10 14 14 C 1.50703 * 120.72253 * 180.02562 * 13 12 11 15 15 O 1.42898 * 109.47171 * 65.00111 * 14 13 12 16 16 Si 1.86303 * 109.47044 * 184.99854 * 14 13 12 17 17 C 1.38609 * 118.55919 * 0.27273 * 13 12 11 18 18 N 1.32282 * 119.19215 * 359.44582 * 17 13 12 19 19 C 1.53788 * 87.17181 * 334.60848 * 7 6 4 20 20 H 1.09004 * 109.47127 * 299.99724 * 1 2 3 21 21 H 1.08995 * 109.47167 * 59.99750 * 1 2 3 22 22 H 1.09003 * 109.47086 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.46546 * 59.99988 * 3 2 1 24 24 H 1.08993 * 109.46989 * 300.00358 * 3 2 1 25 25 H 1.08992 * 113.61658 * 25.52397 * 6 4 3 26 26 H 1.08997 * 113.61319 * 254.61101 * 6 4 3 27 27 H 0.97003 * 120.00483 * 23.46892 * 9 7 6 28 28 H 1.08006 * 120.40508 * 180.02562 * 12 11 10 29 29 H 1.09002 * 109.47152 * 304.99895 * 14 13 12 30 30 H 0.96698 * 113.99898 * 59.99612 * 15 14 13 31 31 H 1.48501 * 109.99761 * 58.68101 * 16 14 13 32 32 H 1.48504 * 109.99730 * 180.02562 * 16 14 13 33 33 H 1.07998 * 120.40407 * 179.72598 * 17 13 12 34 34 H 1.08992 * 113.61158 * 139.93739 * 19 7 6 35 35 H 1.08997 * 113.61166 * 270.84232 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7423 1.9399 0.0006 5 1 4.2448 1.2673 -0.6944 6 6 4.1962 3.4041 -0.1221 7 6 5.2882 3.0696 0.9079 8 1 6.2139 2.7071 0.4608 9 7 5.5098 4.1304 1.8936 10 6 6.7227 4.2187 2.5545 11 7 6.9066 5.1845 3.4425 12 6 8.0536 5.2966 4.0918 13 6 9.0686 4.3889 3.8330 14 6 10.3889 4.4843 4.5533 15 8 10.1898 4.2399 5.9471 16 14 11.5661 3.2163 3.8626 17 6 8.8449 3.3948 2.8934 18 7 7.6725 3.3355 2.2835 19 6 4.3649 1.9463 1.4087 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 1.8032 2.2371 0.8901 24 1 1.8032 2.2371 -0.8899 25 1 3.4597 4.1213 0.2399 26 1 4.5882 3.6586 -1.1068 27 1 4.8065 4.7710 2.0832 28 1 8.1974 6.0858 4.8150 29 1 10.8069 5.4815 4.4154 30 1 9.8191 3.3689 6.1447 31 1 11.7568 3.4402 2.4069 32 1 12.8718 3.2997 4.5651 33 1 9.6167 2.6746 2.6653 34 1 4.8927 1.0259 1.6579 35 1 3.6745 2.2644 2.1899 There are 46 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 46 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_16534460_12175864.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:09:11 Heat of formation + Delta-G solvation = 52.082655 kcal Electronic energy + Delta-G solvation = -17690.989412 eV Core-core repulsion = 14818.038071 eV Total energy + Delta-G solvation = -2872.951341 eV No. of doubly occupied orbitals = 46 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 268.099 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.08613 -40.40867 -38.04876 -35.77364 -34.66875 -32.41478 -30.50441 -29.68297 -26.86157 -26.64735 -25.87259 -23.81934 -22.72035 -20.85948 -19.28067 -18.75364 -18.05498 -17.38306 -16.61952 -16.52687 -16.27268 -16.03741 -15.77816 -15.55901 -15.27731 -14.75886 -14.56789 -14.36200 -14.06091 -13.91012 -13.56200 -13.48841 -13.21584 -13.11864 -12.22820 -12.11418 -11.82863 -11.79304 -11.73836 -11.49757 -11.17260 -10.92399 -10.57499 -9.99692 -9.08291 -8.65361 -5.10311 0.08259 0.17931 0.66837 1.23138 1.57080 1.60409 1.83540 1.93111 2.83058 3.14372 3.35400 3.41626 3.45653 3.58412 3.65159 3.72877 3.73757 3.82284 4.14784 4.15250 4.18708 4.21640 4.22945 4.43528 4.50248 4.59288 4.66087 4.69131 4.73823 4.75867 4.94944 5.00555 5.13068 5.38145 5.80990 6.02254 6.42385 6.52191 7.31181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 S -0.262 6.262 3 C -0.073 4.073 4 C -0.092 4.092 5 H 0.105 0.895 6 C -0.137 4.137 7 C 0.139 3.861 8 H 0.121 0.879 9 N -0.684 5.684 10 C 0.568 3.432 11 N -0.571 5.571 12 C 0.223 3.777 13 C -0.295 4.295 14 C -0.046 4.046 15 O -0.541 6.541 16 Si 0.680 3.320 17 C 0.200 3.800 18 N -0.561 5.561 19 C -0.143 4.143 20 H 0.076 0.924 21 H 0.076 0.924 22 H 0.102 0.898 23 H 0.081 0.919 24 H 0.083 0.917 25 H 0.089 0.911 26 H 0.081 0.919 27 H 0.414 0.586 28 H 0.170 0.830 29 H 0.115 0.885 30 H 0.379 0.621 31 H -0.255 1.255 32 H -0.251 1.251 33 H 0.167 0.833 34 H 0.078 0.922 35 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.783 -1.125 -0.735 2.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.292 4.292 2 S -0.036 6.036 3 C -0.221 4.221 4 C -0.112 4.112 5 H 0.123 0.877 6 C -0.178 4.178 7 C 0.033 3.967 8 H 0.139 0.861 9 N -0.319 5.319 10 C 0.211 3.789 11 N -0.292 5.292 12 C 0.055 3.945 13 C -0.304 4.304 14 C -0.158 4.158 15 O -0.346 6.346 16 Si 0.582 3.418 17 C 0.033 3.967 18 N -0.283 5.283 19 C -0.182 4.182 20 H 0.095 0.905 21 H 0.095 0.905 22 H 0.121 0.879 23 H 0.100 0.900 24 H 0.102 0.898 25 H 0.107 0.893 26 H 0.100 0.900 27 H 0.252 0.748 28 H 0.187 0.813 29 H 0.133 0.867 30 H 0.226 0.774 31 H -0.180 1.180 32 H -0.175 1.175 33 H 0.183 0.817 34 H 0.097 0.903 35 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.059 -1.757 -1.731 2.684 hybrid contribution -0.690 1.945 0.486 2.120 sum -1.748 0.188 -1.246 2.155 Atomic orbital electron populations 1.23398 0.94108 1.06745 1.04923 1.87042 1.07417 1.11072 1.98040 1.23384 0.99126 0.94670 1.04959 1.22116 0.92644 0.97353 0.99042 0.87712 1.23456 0.97917 0.96348 1.00033 1.22539 0.98474 0.87194 0.88457 0.86073 1.44222 1.11647 1.33824 1.42244 1.19440 0.87101 0.85616 0.86704 1.67993 1.25383 1.24133 1.11688 1.22834 0.85620 0.94347 0.91709 1.21707 1.00757 1.02347 1.05542 1.24698 0.97889 1.08186 0.85043 1.86509 1.86666 1.40154 1.21253 0.94990 0.80029 0.87151 0.79677 1.22769 0.92491 0.93361 0.88118 1.67899 1.02067 1.27999 1.30365 1.23617 0.98651 0.99704 0.96274 0.90488 0.90458 0.87945 0.89987 0.89794 0.89285 0.90045 0.74796 0.81326 0.86745 0.77360 1.17982 1.17525 0.81691 0.90315 0.89595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.15 10.76 101.05 1.09 1.24 16 2 S -0.26 -0.21 22.37 -107.50 -2.40 -2.61 16 3 C -0.07 0.10 5.78 37.16 0.21 0.32 16 4 C -0.09 0.16 3.65 -89.72 -0.33 -0.17 16 5 H 0.10 -0.12 8.13 -51.93 -0.42 -0.54 16 6 C -0.14 0.34 7.39 -25.92 -0.19 0.14 16 7 C 0.14 -0.13 4.22 -67.11 -0.28 -0.41 16 8 H 0.12 0.01 7.41 -51.93 -0.38 -0.38 16 9 N -0.68 -0.20 5.51 -55.00 -0.30 -0.50 16 10 C 0.57 1.41 8.43 -322.81 -2.72 -1.31 16 11 N -0.57 -1.61 10.46 -13.93 -0.15 -1.75 16 12 C 0.22 0.26 10.99 -17.23 -0.19 0.07 16 13 C -0.30 0.01 5.36 -104.35 -0.56 -0.55 16 14 C -0.05 0.05 2.83 36.01 0.10 0.15 16 15 O -0.54 0.34 12.85 -35.23 -0.45 -0.11 16 16 Si 0.68 -1.26 29.88 -169.99 -5.08 -6.34 16 17 C 0.20 0.05 9.92 -17.22 -0.17 -0.12 16 18 N -0.56 -1.22 9.15 -13.93 -0.13 -1.34 16 19 C -0.14 0.14 7.45 -25.82 -0.19 -0.05 16 20 H 0.08 -0.14 8.14 -51.92 -0.42 -0.56 16 21 H 0.08 -0.15 8.14 -51.93 -0.42 -0.57 16 22 H 0.10 -0.17 8.14 -51.92 -0.42 -0.59 16 23 H 0.08 -0.15 7.86 -51.92 -0.41 -0.55 16 24 H 0.08 -0.16 8.14 -51.93 -0.42 -0.58 16 25 H 0.09 -0.28 8.07 -51.93 -0.42 -0.70 16 26 H 0.08 -0.21 8.14 -51.93 -0.42 -0.63 16 27 H 0.41 -0.34 8.83 -40.82 -0.36 -0.70 16 28 H 0.17 -0.10 8.06 -52.48 -0.42 -0.53 16 29 H 0.12 -0.11 7.96 -51.93 -0.41 -0.53 16 30 H 0.38 -1.60 8.70 45.56 0.40 -1.20 16 31 H -0.26 -0.13 7.11 56.52 0.40 0.27 16 32 H -0.25 -0.37 7.11 56.52 0.40 0.03 16 33 H 0.17 -0.40 5.07 -52.49 -0.27 -0.67 16 34 H 0.08 0.00 8.14 -51.93 -0.42 -0.42 16 35 H 0.09 -0.06 7.91 -51.93 -0.41 -0.47 16 LS Contribution 308.04 15.07 4.64 4.64 Total: 0.00 -6.10 308.04 -11.95 -18.04 By element: Atomic # 1 Polarization: -4.48 SS G_CDS: -4.84 Total: -9.33 kcal Atomic # 6 Polarization: 2.54 SS G_CDS: -3.23 Total: -0.69 kcal Atomic # 7 Polarization: -3.03 SS G_CDS: -0.58 Total: -3.60 kcal Atomic # 8 Polarization: 0.34 SS G_CDS: -0.45 Total: -0.11 kcal Atomic # 14 Polarization: -1.26 SS G_CDS: -5.08 Total: -6.34 kcal Atomic # 16 Polarization: -0.21 SS G_CDS: -2.40 Total: -2.61 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -6.10 -11.95 -18.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16534460_12175864.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.127 kcal (2) G-P(sol) polarization free energy of solvation -6.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds