Wall clock time and date at job start Mon Mar 8 2021 07:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81393 * 1 3 3 C 1.81402 * 103.00386 * 2 1 4 4 C 1.52998 * 109.47521 * 179.97438 * 3 2 1 5 5 H 1.08999 * 112.84509 * 43.80872 * 4 3 2 6 6 C 1.53779 * 113.61324 * 175.00078 * 4 3 2 7 7 C 1.53790 * 87.07934 * 140.06934 * 6 4 3 8 8 H 1.09001 * 113.61519 * 89.19972 * 7 6 4 9 9 N 1.46495 * 113.61079 * 220.01979 * 7 6 4 10 10 C 1.38409 * 119.99916 * 203.46978 * 9 7 6 11 11 N 1.32488 * 119.22005 * 179.97438 * 10 9 7 12 12 C 1.32275 * 120.74087 * 179.97438 * 11 10 9 13 13 C 1.38602 * 119.19883 * 0.02562 * 12 11 10 14 14 C 1.50703 * 120.72253 * 180.02562 * 13 12 11 15 15 O 1.42898 * 109.47171 * 65.00111 * 14 13 12 16 16 Si 1.86303 * 109.47044 * 184.99854 * 14 13 12 17 17 C 1.38609 * 118.55919 * 0.27273 * 13 12 11 18 18 N 1.32282 * 119.19215 * 359.44582 * 17 13 12 19 19 C 1.53788 * 87.17181 * 334.60848 * 7 6 4 20 20 H 1.09004 * 109.47127 * 299.99724 * 1 2 3 21 21 H 1.08995 * 109.47167 * 59.99750 * 1 2 3 22 22 H 1.09003 * 109.47086 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.46546 * 59.99988 * 3 2 1 24 24 H 1.08993 * 109.46989 * 300.00358 * 3 2 1 25 25 H 1.08992 * 113.61658 * 25.52397 * 6 4 3 26 26 H 1.08997 * 113.61319 * 254.61101 * 6 4 3 27 27 H 0.97003 * 120.00483 * 23.46892 * 9 7 6 28 28 H 1.08006 * 120.40508 * 180.02562 * 12 11 10 29 29 H 1.09002 * 109.47152 * 304.99895 * 14 13 12 30 30 H 0.96698 * 113.99898 * 59.99612 * 15 14 13 31 31 H 1.48501 * 109.99761 * 58.68101 * 16 14 13 32 32 H 1.48504 * 109.99730 * 180.02562 * 16 14 13 33 33 H 1.07998 * 120.40407 * 179.72598 * 17 13 12 34 34 H 1.08992 * 113.61158 * 139.93739 * 19 7 6 35 35 H 1.08997 * 113.61166 * 270.84232 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7423 1.9399 0.0006 5 1 4.2448 1.2673 -0.6944 6 6 4.1962 3.4041 -0.1221 7 6 5.2882 3.0696 0.9079 8 1 6.2139 2.7071 0.4608 9 7 5.5098 4.1304 1.8936 10 6 6.7227 4.2187 2.5545 11 7 6.9066 5.1845 3.4425 12 6 8.0536 5.2966 4.0918 13 6 9.0686 4.3889 3.8330 14 6 10.3889 4.4843 4.5533 15 8 10.1898 4.2399 5.9471 16 14 11.5661 3.2163 3.8626 17 6 8.8449 3.3948 2.8934 18 7 7.6725 3.3355 2.2835 19 6 4.3649 1.9463 1.4087 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 1.8032 2.2371 0.8901 24 1 1.8032 2.2371 -0.8899 25 1 3.4597 4.1213 0.2399 26 1 4.5882 3.6586 -1.1068 27 1 4.8065 4.7710 2.0832 28 1 8.1974 6.0858 4.8150 29 1 10.8069 5.4815 4.4154 30 1 9.8191 3.3689 6.1447 31 1 11.7568 3.4402 2.4069 32 1 12.8718 3.2997 4.5651 33 1 9.6167 2.6746 2.6653 34 1 4.8927 1.0259 1.6579 35 1 3.6745 2.2644 2.1899 There are 46 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 46 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_16534460_12175864.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:09:10 Heat of formation + Delta-G solvation = 56.749037 kcal Electronic energy + Delta-G solvation = -17690.787062 eV Core-core repulsion = 14818.038071 eV Total energy + Delta-G solvation = -2872.748991 eV No. of doubly occupied orbitals = 46 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 268.099 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.12544 -40.33492 -37.99501 -35.75446 -34.73790 -32.40572 -30.42651 -29.58357 -26.78219 -26.59662 -25.90493 -23.79138 -22.71037 -20.77747 -19.27580 -18.77166 -18.01302 -17.37918 -16.60880 -16.46944 -16.23345 -16.03584 -15.74976 -15.53419 -15.21390 -14.68681 -14.55756 -14.26074 -14.08192 -13.81630 -13.44272 -13.41330 -13.14663 -13.08597 -12.26157 -12.04188 -11.90350 -11.76759 -11.70934 -11.42330 -11.13717 -10.88156 -10.54208 -10.04712 -9.09334 -8.69600 -4.98889 0.04318 0.12689 0.73440 1.32524 1.64755 1.67821 1.84570 1.99160 2.77394 3.15200 3.45388 3.54298 3.57020 3.63275 3.69529 3.76134 3.82214 3.85763 4.22868 4.26616 4.29734 4.32432 4.34385 4.54639 4.56466 4.71277 4.73811 4.78581 4.82675 4.86719 5.05606 5.06208 5.17140 5.43515 5.78915 6.03758 6.40533 6.78574 7.26381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 S -0.321 6.321 3 C -0.059 4.059 4 C -0.087 4.087 5 H 0.098 0.902 6 C -0.124 4.124 7 C 0.138 3.862 8 H 0.111 0.889 9 N -0.680 5.680 10 C 0.552 3.448 11 N -0.591 5.591 12 C 0.211 3.789 13 C -0.288 4.288 14 C -0.047 4.047 15 O -0.555 6.555 16 Si 0.767 3.233 17 C 0.195 3.805 18 N -0.577 5.577 19 C -0.140 4.140 20 H 0.084 0.916 21 H 0.085 0.915 22 H 0.104 0.896 23 H 0.088 0.912 24 H 0.093 0.907 25 H 0.101 0.899 26 H 0.087 0.913 27 H 0.418 0.582 28 H 0.181 0.819 29 H 0.114 0.886 30 H 0.394 0.606 31 H -0.284 1.284 32 H -0.296 1.296 33 H 0.189 0.811 34 H 0.065 0.935 35 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.193 -0.890 -0.827 2.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 S -0.096 6.096 3 C -0.207 4.207 4 C -0.107 4.107 5 H 0.117 0.883 6 C -0.164 4.164 7 C 0.033 3.967 8 H 0.128 0.872 9 N -0.316 5.316 10 C 0.195 3.805 11 N -0.314 5.314 12 C 0.044 3.956 13 C -0.297 4.297 14 C -0.158 4.158 15 O -0.362 6.362 16 Si 0.673 3.327 17 C 0.028 3.972 18 N -0.300 5.300 19 C -0.179 4.179 20 H 0.103 0.897 21 H 0.104 0.896 22 H 0.123 0.877 23 H 0.107 0.893 24 H 0.112 0.888 25 H 0.119 0.881 26 H 0.105 0.895 27 H 0.257 0.743 28 H 0.198 0.802 29 H 0.131 0.869 30 H 0.244 0.756 31 H -0.211 1.211 32 H -0.223 1.223 33 H 0.205 0.795 34 H 0.084 0.916 35 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.502 -1.529 -1.814 2.808 hybrid contribution -0.521 1.880 0.548 2.026 sum -2.024 0.351 -1.267 2.413 Atomic orbital electron populations 1.23405 0.91798 1.07186 1.05701 1.87236 1.10171 1.13968 1.98179 1.23371 0.99103 0.92515 1.05702 1.22048 0.92514 0.97803 0.98295 0.88336 1.23397 0.97296 0.95917 0.99772 1.22533 0.98412 0.87097 0.88674 0.87158 1.44295 1.11208 1.33997 1.42055 1.19715 0.87835 0.85867 0.87105 1.68007 1.26276 1.24698 1.12388 1.23144 0.85615 0.94979 0.91867 1.21768 1.00829 1.01817 1.05241 1.24801 0.97450 1.08627 0.84971 1.86478 1.86838 1.41649 1.21253 0.93954 0.76863 0.85697 0.76209 1.23191 0.92485 0.93784 0.87768 1.67947 1.02704 1.28287 1.31020 1.23558 0.98557 0.99051 0.96713 0.89743 0.89589 0.87729 0.89302 0.88846 0.88068 0.89484 0.74316 0.80157 0.86895 0.75562 1.21057 1.22324 0.79471 0.91640 0.89672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.32 10.76 113.37 1.22 1.54 16 2 S -0.32 -0.66 22.37 -56.49 -1.26 -1.93 16 3 C -0.06 0.19 5.78 71.98 0.42 0.60 16 4 C -0.09 0.29 3.65 -10.21 -0.04 0.25 16 5 H 0.10 -0.18 8.13 -2.39 -0.02 -0.19 16 6 C -0.12 0.67 7.39 31.12 0.23 0.90 16 7 C 0.14 -0.20 4.22 45.52 0.19 -0.01 16 8 H 0.11 0.11 7.41 -2.39 -0.02 0.09 16 9 N -0.68 -0.68 5.51 -327.91 -1.81 -2.49 16 10 C 0.55 3.06 8.43 261.49 2.20 5.26 16 11 N -0.59 -3.67 10.46 -197.98 -2.07 -5.74 16 12 C 0.21 0.54 10.99 84.71 0.93 1.48 16 13 C -0.29 0.05 5.36 -19.69 -0.11 -0.05 16 14 C -0.05 0.12 2.83 71.24 0.20 0.32 16 15 O -0.55 1.00 12.85 -148.98 -1.91 -0.91 16 16 Si 0.77 -3.01 29.88 68.60 2.05 -0.96 16 17 C 0.19 0.09 9.92 84.71 0.84 0.93 16 18 N -0.58 -2.77 9.15 -197.98 -1.81 -4.58 16 19 C -0.14 0.20 7.45 31.18 0.23 0.43 16 20 H 0.08 -0.36 8.14 -2.39 -0.02 -0.38 16 21 H 0.09 -0.39 8.14 -2.39 -0.02 -0.41 16 22 H 0.10 -0.35 8.14 -2.39 -0.02 -0.37 16 23 H 0.09 -0.38 7.86 -2.39 -0.02 -0.40 16 24 H 0.09 -0.45 8.14 -2.39 -0.02 -0.47 16 25 H 0.10 -0.76 8.07 -2.39 -0.02 -0.78 16 26 H 0.09 -0.52 8.14 -2.39 -0.02 -0.54 16 27 H 0.42 -0.59 8.83 -92.71 -0.82 -1.41 16 28 H 0.18 -0.18 8.06 -2.91 -0.02 -0.21 16 29 H 0.11 -0.25 7.96 -2.39 -0.02 -0.27 16 30 H 0.39 -3.64 8.70 -74.06 -0.64 -4.29 16 31 H -0.28 -0.27 7.11 99.48 0.71 0.44 16 32 H -0.30 -1.10 7.11 99.48 0.71 -0.40 16 33 H 0.19 -1.02 5.07 -2.91 -0.01 -1.04 16 34 H 0.06 0.08 8.14 -2.39 -0.02 0.07 16 35 H 0.08 -0.10 7.91 -2.39 -0.02 -0.12 16 Total: 0.00 -14.83 308.04 -0.81 -15.64 By element: Atomic # 1 Polarization: -10.36 SS G_CDS: -0.32 Total: -10.67 kcal Atomic # 6 Polarization: 5.33 SS G_CDS: 6.32 Total: 11.65 kcal Atomic # 7 Polarization: -7.12 SS G_CDS: -5.69 Total: -12.81 kcal Atomic # 8 Polarization: 1.00 SS G_CDS: -1.91 Total: -0.91 kcal Atomic # 14 Polarization: -3.01 SS G_CDS: 2.05 Total: -0.96 kcal Atomic # 16 Polarization: -0.66 SS G_CDS: -1.26 Total: -1.93 kcal Total: -14.83 -0.81 -15.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16534460_12175864.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.386 kcal (2) G-P(sol) polarization free energy of solvation -14.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.637 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds