Wall clock time and date at job start Mon Mar 8 2021 07:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.81398 * 103.00088 * 2 1 4 4 C 1.53006 * 109.47199 * 179.97438 * 3 2 1 5 5 H 1.09001 * 112.84738 * 43.80547 * 4 3 2 6 6 C 1.53783 * 113.61345 * 175.00096 * 4 3 2 7 7 C 1.53775 * 87.07788 * 139.98123 * 6 4 3 8 8 H 1.09008 * 113.61258 * 89.20462 * 7 6 4 9 9 N 1.46504 * 113.61427 * 220.01457 * 7 6 4 10 10 C 1.39000 * 120.00380 * 205.00737 * 9 7 6 11 11 N 1.32392 * 119.70447 * 180.02562 * 10 9 7 12 12 C 1.31979 * 121.61993 * 179.97438 * 11 10 9 13 13 C 1.38021 * 120.85913 * 359.97229 * 12 11 10 14 14 C 1.50691 * 120.33942 * 180.02562 * 13 12 11 15 15 O 1.42903 * 109.47358 * 119.99937 * 14 13 12 16 16 Si 1.86304 * 109.46967 * 359.97438 * 14 13 12 17 17 C 1.38889 * 119.32812 * 0.02562 * 13 12 11 18 18 C 1.38304 * 118.50515 * 359.73259 * 17 13 12 19 19 C 1.53773 * 87.08603 * 334.56593 * 7 6 4 20 20 H 1.09001 * 109.47186 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.47070 * 300.00061 * 1 2 3 22 22 H 1.09001 * 109.46593 * 60.00058 * 1 2 3 23 23 H 1.09002 * 109.46881 * 299.99990 * 3 2 1 24 24 H 1.09000 * 109.46946 * 60.00038 * 3 2 1 25 25 H 1.09003 * 113.61254 * 254.53563 * 6 4 3 26 26 H 1.09003 * 113.61454 * 25.34796 * 6 4 3 27 27 H 0.97005 * 119.99324 * 25.00056 * 9 7 6 28 28 H 1.08000 * 119.57030 * 180.02562 * 12 11 10 29 29 H 1.08998 * 109.47263 * 240.00047 * 14 13 12 30 30 H 0.96695 * 113.99768 * 300.00332 * 15 14 13 31 31 H 1.48505 * 109.99963 * 179.97438 * 16 14 13 32 32 H 1.48495 * 110.00347 * 301.31992 * 16 14 13 33 33 H 1.07998 * 120.75003 * 180.02562 * 17 13 12 34 34 H 1.07993 * 120.45131 * 180.28648 * 18 17 13 35 35 H 1.08999 * 113.61320 * 270.88647 * 19 7 6 36 36 H 1.09001 * 113.61580 * 139.98102 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7424 1.9399 0.0006 5 1 4.2449 1.2672 -0.6944 6 6 4.1963 3.4041 -0.1221 7 6 5.2867 3.0702 0.9095 8 1 6.2131 2.7077 0.4638 9 7 5.5069 4.1315 1.8951 10 6 6.7349 4.2400 2.5372 11 7 6.9273 5.2010 3.4272 12 6 8.0776 5.3386 4.0594 13 6 9.1281 4.4780 3.8130 14 6 10.4363 4.6454 4.5419 15 8 10.7208 3.4605 5.2884 16 14 10.3190 6.0981 5.7024 17 6 8.9674 3.4560 2.8863 18 6 7.7490 3.3337 2.2433 19 6 4.3608 1.9485 1.4086 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3632 0.5138 -0.8900 23 1 1.8031 2.2371 -0.8900 24 1 1.8031 2.2371 0.8900 25 1 4.5895 3.6583 -1.1065 26 1 3.4585 4.1216 0.2371 27 1 4.7956 4.7586 2.0995 28 1 8.1982 6.1343 4.7796 29 1 11.2344 4.8207 3.8205 30 1 10.0509 3.2427 5.9508 31 1 11.6028 6.2736 6.4280 32 1 9.9924 7.3309 4.9417 33 1 9.7740 2.7694 2.6760 34 1 7.5881 2.5477 1.5204 35 1 3.6686 2.2680 2.1876 36 1 4.8868 1.0275 1.6601 There are 46 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 46 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_16534460_13915762.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:09:14 Heat of formation + Delta-G solvation = 35.837905 kcal Electronic energy + Delta-G solvation = -17540.229516 eV Core-core repulsion = 14731.999661 eV Total energy + Delta-G solvation = -2808.229855 eV No. of doubly occupied orbitals = 46 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.51130 -40.34536 -37.88300 -35.62355 -33.37097 -31.69603 -30.37102 -29.66217 -26.89493 -26.40727 -24.89535 -23.72892 -22.17412 -20.81759 -18.75817 -18.43984 -17.75564 -17.19255 -16.61576 -16.44798 -16.13745 -15.94711 -15.65754 -15.42642 -14.97344 -14.72119 -14.41363 -14.21212 -14.01744 -13.94751 -13.60838 -13.54516 -13.25880 -13.17233 -12.38447 -12.09482 -11.98285 -11.79184 -11.57036 -11.08341 -10.95748 -10.70343 -10.37284 -10.35874 -8.68883 -8.67988 -5.01722 0.26547 0.45024 0.63772 1.32967 1.57132 1.64536 1.99620 2.07979 2.86468 3.27679 3.38639 3.49478 3.53980 3.59649 3.65435 3.80396 3.96103 4.04905 4.11924 4.13432 4.16440 4.19228 4.35064 4.37847 4.51753 4.55760 4.60296 4.62010 4.71689 4.75288 4.86953 4.91071 5.03249 5.16664 5.35071 5.54882 6.01023 6.53578 6.61194 7.17641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 S -0.263 6.263 3 C -0.073 4.073 4 C -0.093 4.093 5 H 0.104 0.896 6 C -0.135 4.135 7 C 0.130 3.870 8 H 0.112 0.888 9 N -0.711 5.711 10 C 0.408 3.592 11 N -0.541 5.541 12 C 0.155 3.845 13 C -0.236 4.236 14 C -0.052 4.052 15 O -0.543 6.543 16 Si 0.682 3.318 17 C -0.005 4.005 18 C -0.239 4.239 19 C -0.145 4.145 20 H 0.102 0.898 21 H 0.076 0.924 22 H 0.077 0.923 23 H 0.084 0.916 24 H 0.082 0.918 25 H 0.081 0.919 26 H 0.090 0.910 27 H 0.406 0.594 28 H 0.154 0.846 29 H 0.112 0.888 30 H 0.378 0.622 31 H -0.253 1.253 32 H -0.256 1.256 33 H 0.136 0.864 34 H 0.134 0.866 35 H 0.089 0.911 36 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.360 -0.284 -0.484 3.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S -0.037 6.037 3 C -0.222 4.222 4 C -0.113 4.113 5 H 0.122 0.878 6 C -0.175 4.175 7 C 0.024 3.976 8 H 0.129 0.871 9 N -0.342 5.342 10 C 0.172 3.828 11 N -0.257 5.257 12 C -0.002 4.002 13 C -0.242 4.242 14 C -0.164 4.164 15 O -0.348 6.348 16 Si 0.584 3.416 17 C -0.031 4.031 18 C -0.263 4.263 19 C -0.185 4.185 20 H 0.121 0.879 21 H 0.096 0.904 22 H 0.096 0.904 23 H 0.102 0.898 24 H 0.101 0.899 25 H 0.099 0.901 26 H 0.109 0.891 27 H 0.242 0.758 28 H 0.171 0.829 29 H 0.129 0.871 30 H 0.226 0.774 31 H -0.178 1.178 32 H -0.181 1.181 33 H 0.154 0.846 34 H 0.151 0.849 35 H 0.108 0.892 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.552 0.054 -0.609 2.624 hybrid contribution -0.465 0.451 -0.754 0.994 sum -3.018 0.505 -1.362 3.349 Atomic orbital electron populations 1.23399 0.94002 1.06772 1.04955 1.87030 1.07553 1.11041 1.98046 1.23386 0.99069 0.94698 1.05016 1.22109 0.92807 0.97424 0.98933 0.87762 1.23429 0.97896 0.96310 0.99896 1.22531 0.98063 0.87894 0.89108 0.87052 1.44527 1.11913 1.34391 1.43386 1.18438 0.86413 0.89311 0.88593 1.67151 1.24877 1.22675 1.11023 1.22210 0.87008 0.95948 0.95034 1.20988 0.98246 1.00845 1.04071 1.24776 0.95331 0.97477 0.98815 1.86488 1.50605 1.44019 1.53670 0.94843 0.85845 0.76522 0.84376 1.21193 0.96157 0.94746 0.91014 1.21485 0.94404 1.03626 1.06824 1.23634 0.98918 0.99426 0.96481 0.87925 0.90447 0.90442 0.89785 0.89932 0.90075 0.89149 0.75783 0.82894 0.87102 0.77428 1.17825 1.18118 0.84643 0.84868 0.89248 0.90432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.18 10.76 101.05 1.09 1.27 16 2 S -0.26 -0.13 22.37 -107.50 -2.40 -2.53 16 3 C -0.07 0.13 5.78 37.16 0.21 0.34 16 4 C -0.09 0.22 3.66 -89.80 -0.33 -0.11 16 5 H 0.10 -0.20 8.13 -51.93 -0.42 -0.62 16 6 C -0.14 0.41 7.39 -25.92 -0.19 0.22 16 7 C 0.13 -0.28 4.02 -67.12 -0.27 -0.55 16 8 H 0.11 -0.28 6.11 -51.92 -0.32 -0.60 16 9 N -0.71 0.32 5.53 -53.14 -0.29 0.03 16 10 C 0.41 0.68 7.65 -155.03 -1.19 -0.50 16 11 N -0.54 -1.52 10.39 -12.44 -0.13 -1.65 16 12 C 0.16 0.21 9.84 -17.57 -0.17 0.03 16 13 C -0.24 -0.18 5.40 -104.47 -0.56 -0.74 16 14 C -0.05 0.00 2.83 36.00 0.10 0.10 16 15 O -0.54 -0.21 12.78 -35.23 -0.45 -0.66 16 16 Si 0.68 -0.55 29.82 -169.99 -5.07 -5.62 16 17 C -0.01 0.00 9.77 -39.32 -0.38 -0.39 16 18 C -0.24 -0.18 9.28 -39.22 -0.36 -0.54 16 19 C -0.15 0.28 7.43 -25.92 -0.19 0.09 16 20 H 0.10 -0.19 8.14 -51.92 -0.42 -0.61 16 21 H 0.08 -0.16 8.14 -51.92 -0.42 -0.58 16 22 H 0.08 -0.16 8.14 -51.92 -0.42 -0.59 16 23 H 0.08 -0.18 8.14 -51.92 -0.42 -0.61 16 24 H 0.08 -0.17 7.84 -51.92 -0.41 -0.58 16 25 H 0.08 -0.26 8.14 -51.93 -0.42 -0.68 16 26 H 0.09 -0.30 8.08 -51.93 -0.42 -0.72 16 27 H 0.41 -0.37 8.85 -40.82 -0.36 -0.73 16 28 H 0.15 -0.10 4.88 -52.49 -0.26 -0.36 16 29 H 0.11 0.04 7.96 -51.93 -0.41 -0.37 16 30 H 0.38 -1.24 8.70 45.56 0.40 -0.85 16 31 H -0.25 -0.60 7.11 56.52 0.40 -0.20 16 32 H -0.26 -0.39 7.11 56.52 0.40 0.01 16 33 H 0.14 -0.03 8.06 -52.49 -0.42 -0.46 16 34 H 0.13 -0.13 6.04 -52.49 -0.32 -0.45 16 35 H 0.09 -0.13 7.89 -51.93 -0.41 -0.54 16 36 H 0.08 -0.10 8.14 -51.93 -0.42 -0.52 16 LS Contribution 310.31 15.07 4.68 4.68 Total: 0.00 -5.58 310.31 -11.00 -16.59 By element: Atomic # 1 Polarization: -4.97 SS G_CDS: -5.08 Total: -10.05 kcal Atomic # 6 Polarization: 1.47 SS G_CDS: -2.25 Total: -0.78 kcal Atomic # 7 Polarization: -1.20 SS G_CDS: -0.42 Total: -1.62 kcal Atomic # 8 Polarization: -0.21 SS G_CDS: -0.45 Total: -0.66 kcal Atomic # 14 Polarization: -0.55 SS G_CDS: -5.07 Total: -5.62 kcal Atomic # 16 Polarization: -0.13 SS G_CDS: -2.40 Total: -2.53 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -5.58 -11.00 -16.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16534460_13915762.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.424 kcal (2) G-P(sol) polarization free energy of solvation -5.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds