Wall clock time and date at job start Mon Mar 8 2021 07:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.81398 * 103.00088 * 2 1 4 4 C 1.53006 * 109.47199 * 179.97438 * 3 2 1 5 5 H 1.09001 * 112.84738 * 43.80547 * 4 3 2 6 6 C 1.53783 * 113.61345 * 175.00096 * 4 3 2 7 7 C 1.53775 * 87.07788 * 139.98123 * 6 4 3 8 8 H 1.09008 * 113.61258 * 89.20462 * 7 6 4 9 9 N 1.46504 * 113.61427 * 220.01457 * 7 6 4 10 10 C 1.39000 * 120.00380 * 205.00737 * 9 7 6 11 11 N 1.32392 * 119.70447 * 180.02562 * 10 9 7 12 12 C 1.31979 * 121.61993 * 179.97438 * 11 10 9 13 13 C 1.38021 * 120.85913 * 359.97229 * 12 11 10 14 14 C 1.50691 * 120.33942 * 180.02562 * 13 12 11 15 15 O 1.42903 * 109.47358 * 119.99937 * 14 13 12 16 16 Si 1.86304 * 109.46967 * 359.97438 * 14 13 12 17 17 C 1.38889 * 119.32812 * 0.02562 * 13 12 11 18 18 C 1.38304 * 118.50515 * 359.73259 * 17 13 12 19 19 C 1.53773 * 87.08603 * 334.56593 * 7 6 4 20 20 H 1.09001 * 109.47186 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.47070 * 300.00061 * 1 2 3 22 22 H 1.09001 * 109.46593 * 60.00058 * 1 2 3 23 23 H 1.09002 * 109.46881 * 299.99990 * 3 2 1 24 24 H 1.09000 * 109.46946 * 60.00038 * 3 2 1 25 25 H 1.09003 * 113.61254 * 254.53563 * 6 4 3 26 26 H 1.09003 * 113.61454 * 25.34796 * 6 4 3 27 27 H 0.97005 * 119.99324 * 25.00056 * 9 7 6 28 28 H 1.08000 * 119.57030 * 180.02562 * 12 11 10 29 29 H 1.08998 * 109.47263 * 240.00047 * 14 13 12 30 30 H 0.96695 * 113.99768 * 300.00332 * 15 14 13 31 31 H 1.48505 * 109.99963 * 179.97438 * 16 14 13 32 32 H 1.48495 * 110.00347 * 301.31992 * 16 14 13 33 33 H 1.07998 * 120.75003 * 180.02562 * 17 13 12 34 34 H 1.07993 * 120.45131 * 180.28648 * 18 17 13 35 35 H 1.08999 * 113.61320 * 270.88647 * 19 7 6 36 36 H 1.09001 * 113.61580 * 139.98102 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7424 1.9399 0.0006 5 1 4.2449 1.2672 -0.6944 6 6 4.1963 3.4041 -0.1221 7 6 5.2867 3.0702 0.9095 8 1 6.2131 2.7077 0.4638 9 7 5.5069 4.1315 1.8951 10 6 6.7349 4.2400 2.5372 11 7 6.9273 5.2010 3.4272 12 6 8.0776 5.3386 4.0594 13 6 9.1281 4.4780 3.8130 14 6 10.4363 4.6454 4.5419 15 8 10.7208 3.4605 5.2884 16 14 10.3190 6.0981 5.7024 17 6 8.9674 3.4560 2.8863 18 6 7.7490 3.3337 2.2433 19 6 4.3608 1.9485 1.4086 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3632 0.5138 -0.8900 23 1 1.8031 2.2371 -0.8900 24 1 1.8031 2.2371 0.8900 25 1 4.5895 3.6583 -1.1065 26 1 3.4585 4.1216 0.2371 27 1 4.7956 4.7586 2.0995 28 1 8.1982 6.1343 4.7796 29 1 11.2344 4.8207 3.8205 30 1 10.0509 3.2427 5.9508 31 1 11.6028 6.2736 6.4280 32 1 9.9924 7.3309 4.9417 33 1 9.7740 2.7694 2.6760 34 1 7.5881 2.5477 1.5204 35 1 3.6686 2.2680 2.1876 36 1 4.8868 1.0275 1.6601 There are 46 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 46 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_16534460_13915762.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:09:14 Heat of formation + Delta-G solvation = 40.332278 kcal Electronic energy + Delta-G solvation = -17540.034625 eV Core-core repulsion = 14731.999661 eV Total energy + Delta-G solvation = -2808.034964 eV No. of doubly occupied orbitals = 46 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.50914 -40.23649 -37.88257 -35.58540 -33.41328 -31.66545 -30.27851 -29.54679 -26.71937 -26.40486 -24.90684 -23.67619 -22.15400 -20.66202 -18.73573 -18.44274 -17.72616 -17.16748 -16.54951 -16.42091 -16.11969 -15.90595 -15.57842 -15.38854 -14.96097 -14.62097 -14.39504 -14.19046 -14.03083 -13.83791 -13.47265 -13.43142 -13.20996 -13.05926 -12.37388 -12.11551 -11.96063 -11.66139 -11.42584 -11.04203 -10.88954 -10.74629 -10.42363 -10.37744 -8.70548 -8.67259 -4.98697 0.22337 0.40048 0.72797 1.34623 1.63858 1.66642 1.97164 2.13522 2.82248 3.44105 3.54024 3.57079 3.61983 3.71634 3.79392 3.80422 4.00550 4.07119 4.24980 4.27790 4.29381 4.33371 4.37773 4.51914 4.54815 4.71972 4.75053 4.75639 4.81717 4.85861 5.00571 5.05095 5.06537 5.26281 5.37268 5.57192 6.04945 6.55890 6.79882 7.14608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 S -0.321 6.321 3 C -0.060 4.060 4 C -0.089 4.089 5 H 0.101 0.899 6 C -0.125 4.125 7 C 0.130 3.870 8 H 0.116 0.884 9 N -0.707 5.707 10 C 0.395 3.605 11 N -0.565 5.565 12 C 0.145 3.855 13 C -0.237 4.237 14 C -0.054 4.054 15 O -0.557 6.557 16 Si 0.766 3.234 17 C -0.013 4.013 18 C -0.243 4.243 19 C -0.143 4.143 20 H 0.104 0.896 21 H 0.084 0.916 22 H 0.085 0.915 23 H 0.091 0.909 24 H 0.087 0.913 25 H 0.087 0.913 26 H 0.097 0.903 27 H 0.407 0.593 28 H 0.167 0.833 29 H 0.107 0.893 30 H 0.394 0.606 31 H -0.296 1.296 32 H -0.286 1.286 33 H 0.144 0.856 34 H 0.148 0.852 35 H 0.084 0.916 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.845 -0.195 -0.748 3.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 S -0.095 6.095 3 C -0.208 4.208 4 C -0.109 4.109 5 H 0.119 0.881 6 C -0.165 4.165 7 C 0.024 3.976 8 H 0.134 0.866 9 N -0.338 5.338 10 C 0.159 3.841 11 N -0.283 5.283 12 C -0.012 4.012 13 C -0.243 4.243 14 C -0.165 4.165 15 O -0.364 6.364 16 Si 0.673 3.327 17 C -0.039 4.039 18 C -0.267 4.267 19 C -0.182 4.182 20 H 0.123 0.877 21 H 0.103 0.897 22 H 0.104 0.896 23 H 0.110 0.890 24 H 0.106 0.894 25 H 0.105 0.895 26 H 0.115 0.885 27 H 0.244 0.756 28 H 0.184 0.816 29 H 0.124 0.876 30 H 0.244 0.756 31 H -0.224 1.224 32 H -0.213 1.213 33 H 0.162 0.838 34 H 0.166 0.834 35 H 0.103 0.897 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.069 0.115 -0.878 3.194 hybrid contribution -0.311 0.416 -0.672 0.850 sum -3.380 0.531 -1.551 3.756 Atomic orbital electron populations 1.23407 0.91847 1.07183 1.05688 1.87206 1.10155 1.13960 1.98175 1.23384 0.99357 0.92475 1.05578 1.22061 0.92439 0.97887 0.98485 0.88127 1.23377 0.97465 0.95784 0.99849 1.22625 0.98511 0.87448 0.88996 0.86594 1.44613 1.11321 1.34588 1.43276 1.18692 0.87282 0.89412 0.88725 1.67161 1.25648 1.23549 1.11907 1.22461 0.86918 0.96455 0.95324 1.21042 0.98312 1.00782 1.04152 1.24847 0.94834 0.97865 0.98995 1.86451 1.51626 1.44076 1.54272 0.93829 0.83071 0.74022 0.81799 1.21392 0.96505 0.94941 0.91016 1.21670 0.94195 1.03816 1.07049 1.23581 0.98864 0.99118 0.96630 0.87733 0.89747 0.89627 0.89031 0.89430 0.89466 0.88486 0.75635 0.81614 0.87583 0.75628 1.22417 1.21336 0.83798 0.83415 0.89703 0.91203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.35 10.76 113.37 1.22 1.57 16 2 S -0.32 -0.44 22.37 -56.49 -1.26 -1.71 16 3 C -0.06 0.23 5.78 71.98 0.42 0.65 16 4 C -0.09 0.45 3.66 -10.26 -0.04 0.41 16 5 H 0.10 -0.39 8.13 -2.39 -0.02 -0.41 16 6 C -0.12 0.87 7.39 31.12 0.23 1.10 16 7 C 0.13 -0.61 4.02 45.51 0.18 -0.42 16 8 H 0.12 -0.64 6.11 -2.38 -0.01 -0.66 16 9 N -0.71 0.71 5.53 -322.05 -1.78 -1.07 16 10 C 0.39 1.37 7.65 133.07 1.02 2.39 16 11 N -0.57 -3.36 10.39 -193.26 -2.01 -5.36 16 12 C 0.15 0.42 9.84 84.62 0.83 1.25 16 13 C -0.24 -0.38 5.40 -19.76 -0.11 -0.49 16 14 C -0.05 0.00 2.83 71.23 0.20 0.20 16 15 O -0.56 -0.27 12.78 -148.98 -1.90 -2.17 16 16 Si 0.77 -1.03 29.82 68.60 2.05 1.02 16 17 C -0.01 -0.02 9.77 22.44 0.22 0.20 16 18 C -0.24 -0.35 9.28 22.50 0.21 -0.14 16 19 C -0.14 0.55 7.43 31.12 0.23 0.78 16 20 H 0.10 -0.38 8.14 -2.39 -0.02 -0.40 16 21 H 0.08 -0.38 8.14 -2.39 -0.02 -0.40 16 22 H 0.08 -0.41 8.14 -2.39 -0.02 -0.43 16 23 H 0.09 -0.48 8.14 -2.39 -0.02 -0.50 16 24 H 0.09 -0.41 7.84 -2.39 -0.02 -0.43 16 25 H 0.09 -0.66 8.14 -2.39 -0.02 -0.68 16 26 H 0.10 -0.77 8.08 -2.39 -0.02 -0.79 16 27 H 0.41 -0.76 8.85 -92.70 -0.82 -1.58 16 28 H 0.17 -0.20 4.88 -2.91 -0.01 -0.22 16 29 H 0.11 0.10 7.96 -2.39 -0.02 0.08 16 30 H 0.39 -2.79 8.70 -74.06 -0.64 -3.43 16 31 H -0.30 -1.73 7.11 99.48 0.71 -1.02 16 32 H -0.29 -1.03 7.11 99.48 0.71 -0.33 16 33 H 0.14 -0.10 8.06 -2.91 -0.02 -0.12 16 34 H 0.15 -0.36 6.04 -2.91 -0.02 -0.37 16 35 H 0.08 -0.23 7.89 -2.39 -0.02 -0.25 16 36 H 0.07 -0.15 8.14 -2.39 -0.02 -0.17 16 Total: 0.00 -13.28 310.31 -0.63 -13.91 By element: Atomic # 1 Polarization: -11.77 SS G_CDS: -0.33 Total: -12.10 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: 4.62 Total: 7.49 kcal Atomic # 7 Polarization: -2.65 SS G_CDS: -3.79 Total: -6.44 kcal Atomic # 8 Polarization: -0.27 SS G_CDS: -1.90 Total: -2.17 kcal Atomic # 14 Polarization: -1.03 SS G_CDS: 2.05 Total: 1.02 kcal Atomic # 16 Polarization: -0.44 SS G_CDS: -1.26 Total: -1.71 kcal Total: -13.28 -0.63 -13.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16534460_13915762.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.244 kcal (2) G-P(sol) polarization free energy of solvation -13.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds