Wall clock time and date at job start Mon Mar 8 2021 07:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.81397 * 102.99842 * 2 1 4 4 C 1.53003 * 109.47000 * 179.97438 * 3 2 1 5 5 H 1.08998 * 112.90553 * 316.24569 * 4 3 2 6 6 C 1.53778 * 113.61726 * 87.50415 * 4 3 2 7 7 C 1.53778 * 87.08449 * 139.98071 * 6 4 3 8 8 H 1.09000 * 113.61263 * 89.11673 * 7 6 4 9 9 N 1.46502 * 113.61376 * 220.01807 * 7 6 4 10 10 C 1.38613 * 119.99980 * 252.49512 * 9 7 6 11 11 N 1.29684 * 124.94856 * 0.02615 * 10 9 7 12 12 C 1.32116 * 116.86378 * 179.97438 * 11 10 9 13 13 C 1.33327 * 114.58268 * 359.97438 * 12 11 10 14 14 C 1.50702 * 125.95044 * 179.97438 * 13 12 11 15 15 O 1.42896 * 109.47407 * 299.99868 * 14 13 12 16 16 Si 1.86297 * 109.46775 * 179.97438 * 14 13 12 17 17 S 1.70963 * 124.94835 * 179.72286 * 10 9 7 18 18 C 1.53784 * 87.08081 * 334.56700 * 7 6 4 19 19 H 1.09007 * 109.46669 * 60.00146 * 1 2 3 20 20 H 1.09002 * 109.46939 * 180.02562 * 1 2 3 21 21 H 1.08993 * 109.47190 * 300.00079 * 1 2 3 22 22 H 1.08996 * 109.47327 * 59.99982 * 3 2 1 23 23 H 1.09005 * 109.47456 * 299.99514 * 3 2 1 24 24 H 1.08999 * 113.61111 * 254.53134 * 6 4 3 25 25 H 1.08999 * 113.61280 * 25.34517 * 6 4 3 26 26 H 0.97002 * 120.00147 * 72.49618 * 9 7 6 27 27 H 1.08001 * 122.70611 * 180.02562 * 12 11 10 28 28 H 1.09002 * 109.47089 * 60.00585 * 14 13 12 29 29 H 0.96701 * 113.99864 * 300.00462 * 15 14 13 30 30 H 1.48501 * 110.00102 * 58.68214 * 16 14 13 31 31 H 1.48502 * 110.00158 * 180.02562 * 16 14 13 32 32 H 1.09004 * 113.61451 * 270.88641 * 18 7 6 33 33 H 1.08994 * 113.61477 * 139.97943 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7423 1.9399 0.0006 5 1 4.2453 1.2672 0.6953 6 6 4.3620 1.9483 -1.4067 7 6 5.2876 3.0701 -0.9071 8 1 6.2130 2.7063 -0.4607 9 7 5.5085 4.1312 -1.8927 10 6 6.7337 4.2392 -2.5320 11 7 7.7475 3.4555 -2.3322 12 6 8.8410 3.7042 -3.0306 13 6 8.7458 4.7451 -3.8583 14 6 9.8331 5.2529 -4.7699 15 8 10.9678 5.6362 -3.9905 16 14 9.2068 6.7264 -5.7224 17 16 7.1260 5.4203 -3.7041 18 6 4.1962 3.4042 0.1235 19 1 -0.3633 0.5139 -0.8901 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8899 22 1 1.8031 2.2371 0.8899 23 1 1.8032 2.2372 -0.8901 24 1 4.8882 1.0273 -1.6575 25 1 3.6700 2.2661 -2.1866 26 1 4.7975 4.7583 -2.0980 27 1 9.7392 3.1115 -2.9391 28 1 10.1201 4.4655 -5.4669 29 1 10.7853 6.3348 -3.3473 30 1 8.7819 7.7952 -4.7831 31 1 10.2695 7.2364 -6.6257 32 1 3.4592 4.1215 -0.2378 33 1 4.5885 3.6585 1.1081 There are 44 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 44 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_16534460_15704118.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:09:18 Heat of formation + Delta-G solvation = 42.284778 kcal Electronic energy + Delta-G solvation = -16190.460115 eV Core-core repulsion = 13471.662064 eV Total energy + Delta-G solvation = -2718.798051 eV No. of doubly occupied orbitals = 44 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 273.060 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.00249 -40.09536 -37.96176 -35.58258 -31.52821 -30.51883 -29.71868 -26.87957 -26.60131 -25.00040 -23.41110 -21.06503 -20.67254 -19.50212 -18.26829 -17.42896 -17.08096 -16.49665 -16.38969 -16.29032 -15.83640 -15.69118 -15.16243 -14.92739 -14.76249 -14.36343 -13.98740 -13.80698 -13.59009 -13.48826 -13.18374 -12.88348 -12.35163 -12.19794 -11.95349 -11.77873 -11.51652 -11.10316 -10.93870 -10.85998 -10.22544 -10.15931 -8.71640 -8.66510 -5.05070 -0.00696 0.05916 0.65776 0.71540 1.26126 1.56646 1.59272 1.91416 2.05486 2.14928 3.31920 3.35419 3.41652 3.55990 3.69794 3.76069 3.96025 4.13031 4.13939 4.17786 4.20214 4.41233 4.54625 4.55951 4.64367 4.66867 4.72723 4.77157 4.91060 4.99363 5.06285 5.31790 5.86545 6.05982 6.37005 7.03423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 S -0.261 6.261 3 C -0.073 4.073 4 C -0.092 4.092 5 H 0.105 0.895 6 C -0.144 4.144 7 C 0.140 3.860 8 H 0.120 0.880 9 N -0.682 5.682 10 C 0.327 3.673 11 N -0.550 5.550 12 C 0.120 3.880 13 C -0.306 4.306 14 C -0.017 4.017 15 O -0.526 6.526 16 Si 0.654 3.346 17 S 0.085 5.915 18 C -0.137 4.137 19 H 0.076 0.924 20 H 0.102 0.898 21 H 0.076 0.924 22 H 0.083 0.917 23 H 0.082 0.918 24 H 0.078 0.922 25 H 0.086 0.914 26 H 0.414 0.586 27 H 0.176 0.824 28 H 0.125 0.875 29 H 0.377 0.623 30 H -0.244 1.244 31 H -0.238 1.238 32 H 0.088 0.912 33 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.723 1.972 -0.343 5.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.292 4.292 2 S -0.035 6.035 3 C -0.221 4.221 4 C -0.112 4.112 5 H 0.123 0.877 6 C -0.183 4.183 7 C 0.033 3.967 8 H 0.137 0.863 9 N -0.320 5.320 10 C -0.044 4.044 11 N -0.276 5.276 12 C -0.031 4.031 13 C -0.428 4.428 14 C -0.130 4.130 15 O -0.332 6.332 16 Si 0.553 3.447 17 S 0.334 5.666 18 C -0.178 4.178 19 H 0.095 0.905 20 H 0.121 0.879 21 H 0.095 0.905 22 H 0.102 0.898 23 H 0.100 0.900 24 H 0.096 0.904 25 H 0.105 0.895 26 H 0.251 0.749 27 H 0.193 0.807 28 H 0.143 0.857 29 H 0.224 0.776 30 H -0.168 1.168 31 H -0.161 1.161 32 H 0.107 0.893 33 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.276 1.770 -0.846 4.704 hybrid contribution -0.046 0.925 1.082 1.424 sum -4.321 2.695 0.235 5.098 Atomic orbital electron populations 1.23400 0.94099 1.06761 1.04911 1.87080 1.07414 1.11019 1.98036 1.23383 0.99089 0.94722 1.04929 1.22093 0.92668 0.97369 0.99072 0.87724 1.23593 0.98644 0.99794 0.96270 1.22567 0.98440 0.87274 0.88466 0.86255 1.44095 1.09571 1.34864 1.43488 1.23790 0.91206 0.94447 0.94936 1.66470 1.00054 1.30070 1.30959 1.21331 0.95786 0.94699 0.91322 1.25505 0.98791 1.06073 1.12466 1.24067 0.85627 1.07831 0.95477 1.86615 1.33542 1.59018 1.54068 0.95209 0.87535 0.78316 0.83630 1.83979 1.09828 1.33261 1.39520 1.23469 0.97879 0.96332 1.00094 0.90477 0.87938 0.90463 0.89809 0.89981 0.90358 0.89518 0.74879 0.80719 0.85741 0.77559 1.16793 1.16120 0.89315 0.90041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.17 10.76 101.05 1.09 1.26 16 2 S -0.26 -0.20 22.37 -107.50 -2.40 -2.61 16 3 C -0.07 0.12 5.78 37.16 0.21 0.33 16 4 C -0.09 0.17 3.66 -89.80 -0.33 -0.16 16 5 H 0.10 -0.10 8.13 -51.93 -0.42 -0.52 16 6 C -0.14 0.17 7.43 -25.92 -0.19 -0.03 16 7 C 0.14 -0.16 4.36 -67.12 -0.29 -0.46 16 8 H 0.12 0.07 7.67 -51.93 -0.40 -0.33 16 9 N -0.68 0.71 5.51 -54.99 -0.30 0.41 16 10 C 0.33 0.40 8.09 -87.68 -0.71 -0.31 16 11 N -0.55 -1.67 9.83 -15.21 -0.15 -1.82 16 12 C 0.12 0.25 11.22 -19.14 -0.21 0.03 16 13 C -0.31 -0.26 5.74 -36.02 -0.21 -0.47 16 14 C -0.02 0.00 2.99 36.01 0.11 0.11 16 15 O -0.53 -0.66 12.87 -35.23 -0.45 -1.11 16 16 Si 0.65 -0.34 31.05 -169.99 -5.28 -5.62 16 17 S 0.08 0.00 20.57 -107.50 -2.21 -2.21 16 18 C -0.14 0.39 7.39 -25.91 -0.19 0.20 16 19 H 0.08 -0.16 8.14 -51.92 -0.42 -0.58 16 20 H 0.10 -0.18 8.14 -51.92 -0.42 -0.60 16 21 H 0.08 -0.16 8.14 -51.93 -0.42 -0.58 16 22 H 0.08 -0.18 8.14 -51.93 -0.42 -0.60 16 23 H 0.08 -0.18 7.84 -51.92 -0.41 -0.59 16 24 H 0.08 0.02 8.14 -51.93 -0.42 -0.40 16 25 H 0.09 -0.12 7.90 -51.93 -0.41 -0.53 16 26 H 0.41 -1.35 8.85 -40.82 -0.36 -1.71 16 27 H 0.18 0.17 8.06 -52.49 -0.42 -0.25 16 28 H 0.12 -0.11 7.96 -51.93 -0.41 -0.52 16 29 H 0.38 -0.51 8.70 45.56 0.40 -0.11 16 30 H -0.24 -0.33 7.11 56.52 0.40 0.07 16 31 H -0.24 -0.51 7.11 56.52 0.40 -0.11 16 32 H 0.09 -0.35 8.08 -51.93 -0.42 -0.77 16 33 H 0.08 -0.23 8.14 -51.93 -0.42 -0.65 16 LS Contribution 305.86 15.07 4.61 4.61 Total: 0.00 -5.11 305.86 -11.51 -16.62 By element: Atomic # 1 Polarization: -4.19 SS G_CDS: -4.59 Total: -8.78 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: -0.73 Total: 0.50 kcal Atomic # 7 Polarization: -0.96 SS G_CDS: -0.45 Total: -1.41 kcal Atomic # 8 Polarization: -0.66 SS G_CDS: -0.45 Total: -1.11 kcal Atomic # 14 Polarization: -0.34 SS G_CDS: -5.28 Total: -5.62 kcal Atomic # 16 Polarization: -0.20 SS G_CDS: -4.62 Total: -4.82 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -5.11 -11.51 -16.62 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16534460_15704118.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.907 kcal (2) G-P(sol) polarization free energy of solvation -5.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds