Wall clock time and date at job start Mon Mar 8 2021 07:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.81397 * 102.99842 * 2 1 4 4 C 1.53003 * 109.47000 * 179.97438 * 3 2 1 5 5 H 1.08998 * 112.90553 * 316.24569 * 4 3 2 6 6 C 1.53778 * 113.61726 * 87.50415 * 4 3 2 7 7 C 1.53778 * 87.08449 * 139.98071 * 6 4 3 8 8 H 1.09000 * 113.61263 * 89.11673 * 7 6 4 9 9 N 1.46502 * 113.61376 * 220.01807 * 7 6 4 10 10 C 1.38613 * 119.99980 * 252.49512 * 9 7 6 11 11 N 1.29684 * 124.94856 * 0.02615 * 10 9 7 12 12 C 1.32116 * 116.86378 * 179.97438 * 11 10 9 13 13 C 1.33327 * 114.58268 * 359.97438 * 12 11 10 14 14 C 1.50702 * 125.95044 * 179.97438 * 13 12 11 15 15 O 1.42896 * 109.47407 * 299.99868 * 14 13 12 16 16 Si 1.86297 * 109.46775 * 179.97438 * 14 13 12 17 17 S 1.70963 * 124.94835 * 179.72286 * 10 9 7 18 18 C 1.53784 * 87.08081 * 334.56700 * 7 6 4 19 19 H 1.09007 * 109.46669 * 60.00146 * 1 2 3 20 20 H 1.09002 * 109.46939 * 180.02562 * 1 2 3 21 21 H 1.08993 * 109.47190 * 300.00079 * 1 2 3 22 22 H 1.08996 * 109.47327 * 59.99982 * 3 2 1 23 23 H 1.09005 * 109.47456 * 299.99514 * 3 2 1 24 24 H 1.08999 * 113.61111 * 254.53134 * 6 4 3 25 25 H 1.08999 * 113.61280 * 25.34517 * 6 4 3 26 26 H 0.97002 * 120.00147 * 72.49618 * 9 7 6 27 27 H 1.08001 * 122.70611 * 180.02562 * 12 11 10 28 28 H 1.09002 * 109.47089 * 60.00585 * 14 13 12 29 29 H 0.96701 * 113.99864 * 300.00462 * 15 14 13 30 30 H 1.48501 * 110.00102 * 58.68214 * 16 14 13 31 31 H 1.48502 * 110.00158 * 180.02562 * 16 14 13 32 32 H 1.09004 * 113.61451 * 270.88641 * 18 7 6 33 33 H 1.08994 * 113.61477 * 139.97943 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7423 1.9399 0.0006 5 1 4.2453 1.2672 0.6953 6 6 4.3620 1.9483 -1.4067 7 6 5.2876 3.0701 -0.9071 8 1 6.2130 2.7063 -0.4607 9 7 5.5085 4.1312 -1.8927 10 6 6.7337 4.2392 -2.5320 11 7 7.7475 3.4555 -2.3322 12 6 8.8410 3.7042 -3.0306 13 6 8.7458 4.7451 -3.8583 14 6 9.8331 5.2529 -4.7699 15 8 10.9678 5.6362 -3.9905 16 14 9.2068 6.7264 -5.7224 17 16 7.1260 5.4203 -3.7041 18 6 4.1962 3.4042 0.1235 19 1 -0.3633 0.5139 -0.8901 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8899 22 1 1.8031 2.2371 0.8899 23 1 1.8032 2.2372 -0.8901 24 1 4.8882 1.0273 -1.6575 25 1 3.6700 2.2661 -2.1866 26 1 4.7975 4.7583 -2.0980 27 1 9.7392 3.1115 -2.9391 28 1 10.1201 4.4655 -5.4669 29 1 10.7853 6.3348 -3.3473 30 1 8.7819 7.7952 -4.7831 31 1 10.2695 7.2364 -6.6257 32 1 3.4592 4.1215 -0.2378 33 1 4.5885 3.6585 1.1081 There are 44 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 44 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_16534460_15704118.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:09:17 Heat of formation + Delta-G solvation = 46.975666 kcal Electronic energy + Delta-G solvation = -16190.256703 eV Core-core repulsion = 13471.662064 eV Total energy + Delta-G solvation = -2718.594639 eV No. of doubly occupied orbitals = 44 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 273.060 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.99654 -40.07560 -38.00812 -35.55405 -31.54262 -30.45051 -29.60729 -26.80541 -26.57735 -25.01157 -23.38528 -20.97746 -20.70663 -19.48698 -18.30674 -17.42287 -17.06880 -16.50416 -16.35919 -16.27241 -15.86551 -15.65403 -15.12378 -14.99152 -14.67053 -14.25059 -13.98486 -13.77343 -13.43980 -13.39647 -13.09773 -12.92378 -12.46062 -12.14679 -11.94251 -11.68187 -11.43849 -11.08931 -10.91155 -10.85727 -10.28770 -10.20005 -8.71874 -8.70444 -5.03620 -0.06063 0.03235 0.66775 0.73780 1.25624 1.55019 1.68330 1.88641 1.96396 2.21587 3.38454 3.43668 3.54350 3.62522 3.79578 3.81499 3.93382 4.24141 4.30120 4.31696 4.34488 4.53971 4.57752 4.70363 4.72437 4.74099 4.82210 4.86899 5.00187 5.05638 5.07998 5.38012 5.87631 6.18253 6.43941 7.02377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 S -0.328 6.328 3 C -0.057 4.057 4 C -0.089 4.089 5 H 0.092 0.908 6 C -0.140 4.140 7 C 0.138 3.862 8 H 0.099 0.901 9 N -0.673 5.673 10 C 0.315 3.685 11 N -0.581 5.581 12 C 0.103 3.897 13 C -0.307 4.307 14 C -0.023 4.023 15 O -0.543 6.543 16 Si 0.725 3.275 17 S 0.116 5.884 18 C -0.121 4.121 19 H 0.085 0.915 20 H 0.103 0.897 21 H 0.085 0.915 22 H 0.094 0.906 23 H 0.093 0.907 24 H 0.057 0.943 25 H 0.093 0.907 26 H 0.425 0.575 27 H 0.176 0.824 28 H 0.134 0.866 29 H 0.386 0.614 30 H -0.265 1.265 31 H -0.275 1.275 32 H 0.108 0.892 33 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.943 3.021 -0.457 6.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.279 4.279 2 S -0.102 6.102 3 C -0.205 4.205 4 C -0.109 4.109 5 H 0.111 0.889 6 C -0.180 4.180 7 C 0.030 3.970 8 H 0.117 0.883 9 N -0.312 5.312 10 C -0.056 4.056 11 N -0.307 5.307 12 C -0.048 4.048 13 C -0.430 4.430 14 C -0.136 4.136 15 O -0.351 6.351 16 Si 0.627 3.373 17 S 0.365 5.635 18 C -0.161 4.161 19 H 0.104 0.896 20 H 0.122 0.878 21 H 0.104 0.896 22 H 0.112 0.888 23 H 0.112 0.888 24 H 0.076 0.924 25 H 0.112 0.888 26 H 0.265 0.735 27 H 0.193 0.807 28 H 0.151 0.849 29 H 0.235 0.765 30 H -0.191 1.191 31 H -0.201 1.201 32 H 0.127 0.873 33 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -5.524 2.815 -0.948 6.272 hybrid contribution 0.351 0.611 1.114 1.318 sum -5.174 3.426 0.165 6.207 Atomic orbital electron populations 1.23400 0.91597 1.07157 1.05778 1.87317 1.10382 1.14331 1.98195 1.23372 0.98882 0.92297 1.05920 1.22022 0.92658 0.98002 0.98252 0.88936 1.23552 0.98631 0.98871 0.96901 1.22484 0.98031 0.87477 0.88984 0.88328 1.44136 1.09191 1.34910 1.42964 1.24030 0.91533 0.94651 0.95366 1.66465 1.00833 1.31362 1.32074 1.21428 0.95905 0.95444 0.92000 1.25628 0.99520 1.05728 1.12106 1.24287 0.85271 1.08626 0.95382 1.86587 1.34271 1.59626 1.54581 0.94387 0.85608 0.76307 0.80957 1.83791 1.08808 1.32214 1.38661 1.23402 0.97218 0.95791 0.99667 0.89559 0.87847 0.89567 0.88791 0.88834 0.92418 0.88824 0.73471 0.80667 0.84880 0.76461 1.19107 1.20081 0.87323 0.89701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.35 10.76 113.37 1.22 1.57 16 2 S -0.33 -0.68 22.37 -56.49 -1.26 -1.94 16 3 C -0.06 0.22 5.78 71.98 0.42 0.64 16 4 C -0.09 0.32 3.66 -10.27 -0.04 0.28 16 5 H 0.09 -0.08 8.13 -2.39 -0.02 -0.10 16 6 C -0.14 0.26 7.43 31.12 0.23 0.49 16 7 C 0.14 -0.29 4.36 45.52 0.20 -0.09 16 8 H 0.10 0.25 7.67 -2.39 -0.02 0.24 16 9 N -0.67 1.63 5.51 -327.89 -1.81 -0.18 16 10 C 0.31 0.83 8.09 179.32 1.45 2.28 16 11 N -0.58 -4.11 9.83 -202.03 -1.99 -6.10 16 12 C 0.10 0.52 11.22 83.54 0.94 1.46 16 13 C -0.31 -0.58 5.74 24.58 0.14 -0.44 16 14 C -0.02 0.00 2.99 71.24 0.21 0.21 16 15 O -0.54 -1.51 12.87 -148.98 -1.92 -3.43 16 16 Si 0.73 -0.88 31.05 68.60 2.13 1.25 16 17 S 0.12 -0.05 20.57 -56.49 -1.16 -1.21 16 18 C -0.12 0.80 7.39 31.12 0.23 1.03 16 19 H 0.09 -0.43 8.14 -2.39 -0.02 -0.45 16 20 H 0.10 -0.36 8.14 -2.39 -0.02 -0.38 16 21 H 0.09 -0.43 8.14 -2.39 -0.02 -0.45 16 22 H 0.09 -0.53 8.14 -2.39 -0.02 -0.55 16 23 H 0.09 -0.56 7.84 -2.39 -0.02 -0.58 16 24 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 25 H 0.09 -0.30 7.90 -2.39 -0.02 -0.32 16 26 H 0.43 -3.29 8.85 -92.71 -0.82 -4.11 16 27 H 0.18 0.62 8.06 -2.91 -0.02 0.59 16 28 H 0.13 -0.25 7.96 -2.39 -0.02 -0.27 16 29 H 0.39 -0.93 8.70 -74.06 -0.64 -1.58 16 30 H -0.27 -0.63 7.11 99.48 0.71 0.08 16 31 H -0.28 -1.37 7.11 99.48 0.71 -0.66 16 32 H 0.11 -1.11 8.08 -2.39 -0.02 -1.13 16 33 H 0.08 -0.56 8.14 -2.39 -0.02 -0.57 16 Total: 0.00 -12.98 305.86 -1.31 -14.29 By element: Atomic # 1 Polarization: -9.82 SS G_CDS: -0.30 Total: -10.12 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: 5.00 Total: 7.43 kcal Atomic # 7 Polarization: -2.48 SS G_CDS: -3.79 Total: -6.28 kcal Atomic # 8 Polarization: -1.51 SS G_CDS: -1.92 Total: -3.43 kcal Atomic # 14 Polarization: -0.88 SS G_CDS: 2.13 Total: 1.25 kcal Atomic # 16 Polarization: -0.72 SS G_CDS: -2.43 Total: -3.15 kcal Total: -12.98 -1.31 -14.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16534460_15704118.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.269 kcal (2) G-P(sol) polarization free energy of solvation -12.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds