Wall clock time and date at job start Mon Mar 8 2021 07:09:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.81394 * 102.99917 * 2 1 4 4 C 1.52998 * 109.47202 * 180.02562 * 3 2 1 5 5 H 1.08995 * 112.84920 * 43.80322 * 4 3 2 6 6 C 1.53783 * 113.61630 * 174.99972 * 4 3 2 7 7 C 1.53787 * 87.07987 * 139.97994 * 6 4 3 8 8 H 1.08999 * 113.61140 * 89.20387 * 7 6 4 9 9 N 1.46503 * 113.61276 * 220.01942 * 7 6 4 10 10 C 1.38612 * 119.99742 * 203.47569 * 9 7 6 11 11 N 1.29689 * 124.94822 * 180.02562 * 10 9 7 12 12 C 1.32112 * 116.86762 * 180.02562 * 11 10 9 13 13 C 1.50698 * 122.71244 * 180.02562 * 12 11 10 14 14 O 1.42901 * 109.47520 * 150.00107 * 13 12 11 15 15 Si 1.86301 * 109.47296 * 29.99538 * 13 12 11 16 16 C 1.33334 * 114.57962 * 359.97438 * 12 11 10 17 17 C 1.50694 * 125.94973 * 179.74118 * 16 12 11 18 18 S 1.70962 * 124.94915 * 0.04772 * 10 9 7 19 19 C 1.53774 * 87.17366 * 334.60956 * 7 6 4 20 20 H 1.08992 * 109.47234 * 299.99608 * 1 2 3 21 21 H 1.08996 * 109.47206 * 60.00223 * 1 2 3 22 22 H 1.09001 * 109.46752 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47343 * 59.99841 * 3 2 1 24 24 H 1.08999 * 109.47312 * 299.99918 * 3 2 1 25 25 H 1.09004 * 113.61335 * 25.43284 * 6 4 3 26 26 H 1.08994 * 113.69607 * 254.54155 * 6 4 3 27 27 H 0.97002 * 119.99812 * 23.46913 * 9 7 6 28 28 H 1.09002 * 109.46858 * 270.00107 * 13 12 11 29 29 H 0.96696 * 113.99477 * 299.99688 * 14 13 12 30 30 H 1.48502 * 109.99667 * 58.68470 * 15 13 12 31 31 H 1.48502 * 110.00208 * 180.02562 * 15 13 12 32 32 H 1.08998 * 109.47784 * 90.00080 * 17 16 12 33 33 H 1.09003 * 109.47064 * 209.99665 * 17 16 12 34 34 H 1.08994 * 109.47528 * 329.99331 * 17 16 12 35 35 H 1.09001 * 113.61645 * 139.93678 * 19 7 6 36 36 H 1.09003 * 113.61867 * 270.84004 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7423 1.9399 -0.0006 5 1 4.2442 1.2674 -0.6962 6 6 4.1961 3.4041 -0.1235 7 6 5.2875 3.0700 0.9072 8 1 6.2134 2.7077 0.4607 9 7 5.5084 4.1312 1.8928 10 6 6.7227 4.2199 2.5553 11 7 7.0209 5.1170 3.4432 12 6 8.2286 5.0526 3.9748 13 6 8.7124 6.0270 5.0176 14 8 9.6571 5.3799 5.8725 15 14 7.2659 6.6232 6.0291 16 6 8.9845 4.0551 3.5150 17 6 10.3979 3.7486 3.9382 18 16 8.0459 3.1630 2.3205 19 6 4.3641 1.9469 1.4078 20 1 -0.3633 0.5137 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8031 2.2371 0.8900 24 1 1.8031 2.2371 -0.8900 25 1 3.4592 4.1215 0.2378 26 1 4.5886 3.6600 -1.1076 27 1 4.8049 4.7718 2.0817 28 1 9.1880 6.8768 4.5278 29 1 9.3017 4.6129 6.3419 30 1 6.5895 5.4705 6.6765 31 1 7.7298 7.5854 7.0607 32 1 10.3831 3.0620 4.7846 33 1 10.9345 3.2898 3.1076 34 1 10.8988 4.6721 4.2283 35 1 4.8918 1.0265 1.6576 36 1 3.6731 2.2650 2.1885 There are 47 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 47 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_16534460_15704122.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:09:20 Heat of formation + Delta-G solvation = 37.842302 kcal Electronic energy + Delta-G solvation = -18127.709162 eV Core-core repulsion = 15253.180852 eV Total energy + Delta-G solvation = -2874.528310 eV No. of doubly occupied orbitals = 47 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 287.075 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.12968 -40.52119 -37.84499 -35.66133 -32.67998 -30.76502 -29.83217 -28.98072 -26.97627 -25.65284 -24.62231 -23.44577 -21.33412 -20.19253 -19.11234 -18.00361 -17.55007 -17.31646 -16.64597 -16.52394 -16.37185 -15.71048 -15.61134 -15.14859 -14.84726 -14.46145 -14.14393 -14.09322 -13.90304 -13.74254 -13.72861 -13.61596 -13.34487 -13.11678 -12.73072 -12.29838 -12.19966 -11.84596 -11.80255 -11.63362 -11.01714 -10.96021 -10.56890 -10.42223 -9.98031 -8.70775 -8.59265 -4.65427 0.05249 0.21001 0.61102 0.82048 1.40981 1.54719 1.84660 1.89725 1.98879 2.14112 3.16285 3.29891 3.32326 3.48827 3.50680 3.56837 3.94990 4.08219 4.11831 4.15557 4.20369 4.31510 4.37886 4.45054 4.52230 4.54267 4.60828 4.70226 4.77812 4.78864 4.83868 4.92347 5.05649 5.17837 5.33222 5.62752 6.26500 6.40694 6.97910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 S -0.262 6.262 3 C -0.074 4.074 4 C -0.092 4.092 5 H 0.106 0.894 6 C -0.131 4.131 7 C 0.127 3.873 8 H 0.109 0.891 9 N -0.682 5.682 10 C 0.321 3.679 11 N -0.539 5.539 12 C 0.068 3.932 13 C -0.042 4.042 14 O -0.526 6.526 15 Si 0.720 3.280 16 C -0.242 4.242 17 C -0.066 4.066 18 S 0.099 5.901 19 C -0.146 4.146 20 H 0.077 0.923 21 H 0.077 0.923 22 H 0.102 0.898 23 H 0.083 0.917 24 H 0.085 0.915 25 H 0.094 0.906 26 H 0.084 0.916 27 H 0.413 0.587 28 H 0.124 0.876 29 H 0.376 0.624 30 H -0.268 1.268 31 H -0.261 1.261 32 H 0.068 0.932 33 H 0.060 0.940 34 H 0.091 0.909 35 H 0.079 0.921 36 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.077 -0.249 -3.180 4.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S -0.036 6.036 3 C -0.222 4.222 4 C -0.112 4.112 5 H 0.124 0.876 6 C -0.171 4.171 7 C 0.021 3.979 8 H 0.127 0.873 9 N -0.322 5.322 10 C -0.051 4.051 11 N -0.266 5.266 12 C -0.062 4.062 13 C -0.155 4.155 14 O -0.331 6.331 15 Si 0.621 3.379 16 C -0.365 4.365 17 C -0.125 4.125 18 S 0.348 5.652 19 C -0.185 4.185 20 H 0.096 0.904 21 H 0.096 0.904 22 H 0.121 0.879 23 H 0.101 0.899 24 H 0.103 0.897 25 H 0.112 0.888 26 H 0.103 0.897 27 H 0.252 0.748 28 H 0.142 0.858 29 H 0.223 0.777 30 H -0.193 1.193 31 H -0.186 1.186 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.110 0.890 35 H 0.098 0.902 36 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.627 -1.234 -3.238 4.349 hybrid contribution -0.531 0.752 0.869 1.265 sum -3.158 -0.482 -2.369 3.977 Atomic orbital electron populations 1.23400 0.93958 1.06794 1.04973 1.87046 1.07591 1.10916 1.98047 1.23375 0.98890 0.94826 1.05114 1.22132 0.92964 0.97344 0.98758 0.87611 1.23401 0.97451 0.96507 0.99721 1.22639 0.98428 0.87744 0.89100 0.87345 1.43975 1.11510 1.34176 1.42533 1.23332 0.92806 0.94319 0.94612 1.65732 1.19041 1.26881 1.14947 1.20089 0.88516 0.97618 0.99980 1.24457 1.02263 0.95541 0.93191 1.86604 1.38144 1.47960 1.60429 0.93658 0.80093 0.83612 0.80524 1.25126 1.03137 1.02734 1.05469 1.20201 0.88563 1.03214 1.00510 1.83975 1.06073 1.32968 1.42229 1.23692 0.98804 0.99269 0.96768 0.90441 0.90409 0.87920 0.89864 0.89666 0.88802 0.89725 0.74797 0.85824 0.77651 1.19267 1.18642 0.91312 0.92144 0.89042 0.90183 0.88961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.21 10.76 101.05 1.09 1.30 16 2 S -0.26 -0.04 22.37 -107.50 -2.40 -2.45 16 3 C -0.07 0.17 5.78 37.16 0.21 0.38 16 4 C -0.09 0.26 3.66 -89.71 -0.33 -0.07 16 5 H 0.11 -0.25 8.13 -51.93 -0.42 -0.67 16 6 C -0.13 0.49 7.39 -25.91 -0.19 0.30 16 7 C 0.13 -0.32 4.20 -67.12 -0.28 -0.60 16 8 H 0.11 -0.25 7.11 -51.93 -0.37 -0.62 16 9 N -0.68 0.72 5.52 -54.99 -0.30 0.41 16 10 C 0.32 0.48 8.24 -87.68 -0.72 -0.24 16 11 N -0.54 -1.48 8.95 -11.36 -0.10 -1.59 16 12 C 0.07 0.17 5.92 -84.19 -0.50 -0.33 16 13 C -0.04 -0.06 2.82 36.00 0.10 0.04 16 14 O -0.53 -0.69 9.91 -35.23 -0.35 -1.04 16 15 Si 0.72 1.03 32.08 -169.99 -5.45 -4.42 16 16 C -0.24 -0.49 6.50 -36.02 -0.23 -0.72 16 17 C -0.07 -0.03 8.94 36.00 0.32 0.29 16 18 S 0.10 0.10 21.71 -107.50 -2.33 -2.23 16 19 C -0.15 0.33 7.45 -25.83 -0.19 0.14 16 20 H 0.08 -0.18 8.14 -51.93 -0.42 -0.60 16 21 H 0.08 -0.19 8.14 -51.93 -0.42 -0.61 16 22 H 0.10 -0.21 8.14 -51.92 -0.42 -0.63 16 23 H 0.08 -0.22 7.85 -51.92 -0.41 -0.63 16 24 H 0.08 -0.24 8.14 -51.92 -0.42 -0.66 16 25 H 0.09 -0.41 8.07 -51.93 -0.42 -0.83 16 26 H 0.08 -0.34 8.14 -51.93 -0.42 -0.76 16 27 H 0.41 -0.85 8.84 -40.82 -0.36 -1.21 16 28 H 0.12 0.08 7.96 -51.93 -0.41 -0.34 16 29 H 0.38 -0.36 8.68 45.56 0.40 0.04 16 30 H -0.27 -1.14 7.11 56.52 0.40 -0.73 16 31 H -0.26 -0.96 7.11 56.52 0.40 -0.56 16 32 H 0.07 -0.02 8.14 -51.93 -0.42 -0.44 16 33 H 0.06 0.00 8.14 -51.93 -0.42 -0.42 16 34 H 0.09 0.09 6.63 -51.93 -0.34 -0.25 16 35 H 0.08 -0.12 8.14 -51.93 -0.42 -0.54 16 36 H 0.09 -0.18 7.90 -51.93 -0.41 -0.59 16 LS Contribution 322.70 15.07 4.86 4.86 Total: 0.00 -4.88 322.70 -12.14 -17.02 By element: Atomic # 1 Polarization: -5.74 SS G_CDS: -5.33 Total: -11.07 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: -0.72 Total: 0.50 kcal Atomic # 7 Polarization: -0.77 SS G_CDS: -0.41 Total: -1.17 kcal Atomic # 8 Polarization: -0.69 SS G_CDS: -0.35 Total: -1.04 kcal Atomic # 14 Polarization: 1.03 SS G_CDS: -5.45 Total: -4.42 kcal Atomic # 16 Polarization: 0.06 SS G_CDS: -4.74 Total: -4.68 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -4.88 -12.14 -17.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16534460_15704122.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.864 kcal (2) G-P(sol) polarization free energy of solvation -4.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds