Wall clock time and date at job start Mon Mar 8 2021 07:09:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.81394 * 102.99917 * 2 1 4 4 C 1.52998 * 109.47202 * 180.02562 * 3 2 1 5 5 H 1.08995 * 112.84920 * 43.80322 * 4 3 2 6 6 C 1.53783 * 113.61630 * 174.99972 * 4 3 2 7 7 C 1.53787 * 87.07987 * 139.97994 * 6 4 3 8 8 H 1.08999 * 113.61140 * 89.20387 * 7 6 4 9 9 N 1.46503 * 113.61276 * 220.01942 * 7 6 4 10 10 C 1.38612 * 119.99742 * 203.47569 * 9 7 6 11 11 N 1.29689 * 124.94822 * 180.02562 * 10 9 7 12 12 C 1.32112 * 116.86762 * 180.02562 * 11 10 9 13 13 C 1.50698 * 122.71244 * 180.02562 * 12 11 10 14 14 O 1.42901 * 109.47520 * 150.00107 * 13 12 11 15 15 Si 1.86301 * 109.47296 * 29.99538 * 13 12 11 16 16 C 1.33334 * 114.57962 * 359.97438 * 12 11 10 17 17 C 1.50694 * 125.94973 * 179.74118 * 16 12 11 18 18 S 1.70962 * 124.94915 * 0.04772 * 10 9 7 19 19 C 1.53774 * 87.17366 * 334.60956 * 7 6 4 20 20 H 1.08992 * 109.47234 * 299.99608 * 1 2 3 21 21 H 1.08996 * 109.47206 * 60.00223 * 1 2 3 22 22 H 1.09001 * 109.46752 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47343 * 59.99841 * 3 2 1 24 24 H 1.08999 * 109.47312 * 299.99918 * 3 2 1 25 25 H 1.09004 * 113.61335 * 25.43284 * 6 4 3 26 26 H 1.08994 * 113.69607 * 254.54155 * 6 4 3 27 27 H 0.97002 * 119.99812 * 23.46913 * 9 7 6 28 28 H 1.09002 * 109.46858 * 270.00107 * 13 12 11 29 29 H 0.96696 * 113.99477 * 299.99688 * 14 13 12 30 30 H 1.48502 * 109.99667 * 58.68470 * 15 13 12 31 31 H 1.48502 * 110.00208 * 180.02562 * 15 13 12 32 32 H 1.08998 * 109.47784 * 90.00080 * 17 16 12 33 33 H 1.09003 * 109.47064 * 209.99665 * 17 16 12 34 34 H 1.08994 * 109.47528 * 329.99331 * 17 16 12 35 35 H 1.09001 * 113.61645 * 139.93678 * 19 7 6 36 36 H 1.09003 * 113.61867 * 270.84004 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7423 1.9399 -0.0006 5 1 4.2442 1.2674 -0.6962 6 6 4.1961 3.4041 -0.1235 7 6 5.2875 3.0700 0.9072 8 1 6.2134 2.7077 0.4607 9 7 5.5084 4.1312 1.8928 10 6 6.7227 4.2199 2.5553 11 7 7.0209 5.1170 3.4432 12 6 8.2286 5.0526 3.9748 13 6 8.7124 6.0270 5.0176 14 8 9.6571 5.3799 5.8725 15 14 7.2659 6.6232 6.0291 16 6 8.9845 4.0551 3.5150 17 6 10.3979 3.7486 3.9382 18 16 8.0459 3.1630 2.3205 19 6 4.3641 1.9469 1.4078 20 1 -0.3633 0.5137 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8031 2.2371 0.8900 24 1 1.8031 2.2371 -0.8900 25 1 3.4592 4.1215 0.2378 26 1 4.5886 3.6600 -1.1076 27 1 4.8049 4.7718 2.0817 28 1 9.1880 6.8768 4.5278 29 1 9.3017 4.6129 6.3419 30 1 6.5895 5.4705 6.6765 31 1 7.7298 7.5854 7.0607 32 1 10.3831 3.0620 4.7846 33 1 10.9345 3.2898 3.1076 34 1 10.8988 4.6721 4.2283 35 1 4.8918 1.0265 1.6576 36 1 3.6731 2.2650 2.1885 There are 47 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 47 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_16534460_15704122.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:09:20 Heat of formation + Delta-G solvation = 44.231694 kcal Electronic energy + Delta-G solvation = -18127.432097 eV Core-core repulsion = 15253.180852 eV Total energy + Delta-G solvation = -2874.251246 eV No. of doubly occupied orbitals = 47 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 287.075 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.15522 -40.40980 -37.91826 -35.62923 -32.70538 -30.64334 -29.71249 -29.00812 -26.75550 -25.71383 -24.63981 -23.35013 -21.25741 -20.13485 -19.14662 -18.08200 -17.50285 -17.30530 -16.71342 -16.38589 -16.29430 -15.75503 -15.60688 -15.12935 -14.71470 -14.32437 -14.31415 -14.04166 -13.82432 -13.76829 -13.55633 -13.44882 -13.37055 -13.03323 -12.79643 -12.44752 -12.03473 -11.97725 -11.68015 -11.47551 -10.98382 -10.88001 -10.67078 -10.49960 -10.06195 -8.69989 -8.62013 -4.79921 -0.03435 0.15050 0.72881 0.73927 1.28689 1.66172 1.67388 1.81911 1.95266 1.99394 3.27756 3.37155 3.49745 3.51513 3.68513 3.73188 4.09799 4.17698 4.27965 4.29988 4.32125 4.33610 4.51046 4.54533 4.66890 4.73064 4.77437 4.79322 4.86486 4.87791 5.00201 5.02992 5.07101 5.26170 5.32547 5.70273 6.30850 6.43714 6.91664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 S -0.323 6.323 3 C -0.059 4.059 4 C -0.089 4.089 5 H 0.101 0.899 6 C -0.117 4.117 7 C 0.124 3.876 8 H 0.108 0.892 9 N -0.673 5.673 10 C 0.313 3.687 11 N -0.558 5.558 12 C 0.057 3.943 13 C -0.041 4.041 14 O -0.532 6.532 15 Si 0.782 3.218 16 C -0.257 4.257 17 C -0.062 4.062 18 S 0.110 5.890 19 C -0.145 4.145 20 H 0.084 0.916 21 H 0.085 0.915 22 H 0.103 0.897 23 H 0.089 0.911 24 H 0.094 0.906 25 H 0.106 0.894 26 H 0.092 0.908 27 H 0.419 0.581 28 H 0.133 0.867 29 H 0.384 0.616 30 H -0.307 1.307 31 H -0.291 1.291 32 H 0.076 0.924 33 H 0.064 0.936 34 H 0.086 0.914 35 H 0.069 0.931 36 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.456 0.140 -3.951 5.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 S -0.097 6.097 3 C -0.207 4.207 4 C -0.109 4.109 5 H 0.119 0.881 6 C -0.157 4.157 7 C 0.019 3.981 8 H 0.126 0.874 9 N -0.313 5.313 10 C -0.059 4.059 11 N -0.286 5.286 12 C -0.074 4.074 13 C -0.154 4.154 14 O -0.339 6.339 15 Si 0.687 3.313 16 C -0.380 4.380 17 C -0.121 4.121 18 S 0.359 5.641 19 C -0.184 4.184 20 H 0.103 0.897 21 H 0.104 0.896 22 H 0.121 0.879 23 H 0.108 0.892 24 H 0.113 0.887 25 H 0.124 0.876 26 H 0.111 0.889 27 H 0.258 0.742 28 H 0.150 0.850 29 H 0.234 0.766 30 H -0.234 1.234 31 H -0.219 1.219 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.105 0.895 35 H 0.088 0.912 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -3.022 -0.849 -4.035 5.112 hybrid contribution -0.455 0.578 1.127 1.346 sum -3.477 -0.271 -2.908 4.541 Atomic orbital electron populations 1.23401 0.91823 1.07135 1.05718 1.87241 1.10176 1.14135 1.98185 1.23378 0.99115 0.92397 1.05838 1.22082 0.92622 0.98008 0.98148 0.88123 1.23355 0.96851 0.95890 0.99614 1.22740 0.98781 0.87408 0.89166 0.87440 1.44105 1.10800 1.34325 1.42095 1.23589 0.93629 0.94170 0.94495 1.65742 1.19349 1.27725 1.15797 1.20243 0.88727 0.98035 1.00354 1.24487 1.02129 0.95697 0.93066 1.86582 1.38364 1.48458 1.60513 0.92917 0.78749 0.80615 0.78972 1.25365 1.03833 1.02932 1.05859 1.20194 0.87834 1.03158 1.00942 1.83873 1.05702 1.32625 1.41912 1.23659 0.98794 0.98835 0.97137 0.89745 0.89553 0.87851 0.89197 0.88742 0.87612 0.88929 0.74165 0.84964 0.76643 1.23415 1.21911 0.90584 0.91663 0.89507 0.91248 0.89119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.41 10.76 113.37 1.22 1.63 16 2 S -0.32 -0.23 22.37 -56.49 -1.26 -1.50 16 3 C -0.06 0.31 5.78 71.98 0.42 0.72 16 4 C -0.09 0.55 3.66 -10.21 -0.04 0.51 16 5 H 0.10 -0.48 8.13 -2.39 -0.02 -0.50 16 6 C -0.12 1.03 7.39 31.12 0.23 1.27 16 7 C 0.12 -0.69 4.20 45.52 0.19 -0.49 16 8 H 0.11 -0.54 7.11 -2.39 -0.02 -0.56 16 9 N -0.67 1.70 5.52 -327.89 -1.81 -0.11 16 10 C 0.31 0.93 8.24 179.32 1.48 2.41 16 11 N -0.56 -3.17 8.95 -189.86 -1.70 -4.87 16 12 C 0.06 0.30 5.92 41.41 0.25 0.54 16 13 C -0.04 -0.13 2.82 71.24 0.20 0.08 16 14 O -0.53 -1.51 9.91 -148.98 -1.48 -2.98 16 15 Si 0.78 2.87 32.08 68.60 2.20 5.07 16 16 C -0.26 -1.07 6.50 24.57 0.16 -0.91 16 17 C -0.06 -0.06 8.94 71.23 0.64 0.57 16 18 S 0.11 0.23 21.71 -56.49 -1.23 -0.99 16 19 C -0.14 0.67 7.45 31.18 0.23 0.90 16 20 H 0.08 -0.43 8.14 -2.39 -0.02 -0.45 16 21 H 0.09 -0.47 8.14 -2.39 -0.02 -0.49 16 22 H 0.10 -0.41 8.14 -2.39 -0.02 -0.43 16 23 H 0.09 -0.56 7.85 -2.39 -0.02 -0.58 16 24 H 0.09 -0.64 8.14 -2.39 -0.02 -0.66 16 25 H 0.11 -1.14 8.07 -2.39 -0.02 -1.16 16 26 H 0.09 -0.89 8.14 -2.39 -0.02 -0.91 16 27 H 0.42 -1.99 8.84 -92.71 -0.82 -2.81 16 28 H 0.13 0.14 7.96 -2.39 -0.02 0.13 16 29 H 0.38 -0.58 8.68 -74.06 -0.64 -1.22 16 30 H -0.31 -3.10 7.11 99.48 0.71 -2.39 16 31 H -0.29 -2.48 7.11 99.48 0.71 -1.78 16 32 H 0.08 -0.06 8.14 -2.39 -0.02 -0.08 16 33 H 0.06 -0.01 8.14 -2.39 -0.02 -0.03 16 34 H 0.09 0.17 6.63 -2.39 -0.02 0.16 16 35 H 0.07 -0.16 8.14 -2.39 -0.02 -0.18 16 36 H 0.09 -0.37 7.90 -2.39 -0.02 -0.39 16 Total: 0.00 -11.86 322.70 -0.63 -12.50 By element: Atomic # 1 Polarization: -14.00 SS G_CDS: -0.33 Total: -14.33 kcal Atomic # 6 Polarization: 2.25 SS G_CDS: 4.97 Total: 7.22 kcal Atomic # 7 Polarization: -1.48 SS G_CDS: -3.51 Total: -4.98 kcal Atomic # 8 Polarization: -1.51 SS G_CDS: -1.48 Total: -2.98 kcal Atomic # 14 Polarization: 2.87 SS G_CDS: 2.20 Total: 5.07 kcal Atomic # 16 Polarization: 0.00 SS G_CDS: -2.49 Total: -2.49 kcal Total: -11.86 -0.63 -12.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16534460_15704122.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.730 kcal (2) G-P(sol) polarization free energy of solvation -11.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds