Wall clock time and date at job start Mon Mar 8 2021 07:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 O 1.42105 * 108.57604 * 2 1 4 4 O 1.42096 * 108.58199 * 228.97629 * 2 1 3 5 5 C 1.81401 * 101.91900 * 114.48418 * 2 1 3 6 6 C 1.52999 * 109.46895 * 180.02562 * 5 2 1 7 7 H 1.09005 * 112.91011 * 316.25258 * 6 5 2 8 8 C 1.53781 * 113.61879 * 87.50509 * 6 5 2 9 9 C 1.53780 * 87.08348 * 139.97945 * 8 6 5 10 10 H 1.09005 * 113.68637 * 220.00573 * 9 8 6 11 11 N 1.46496 * 113.61292 * 89.12020 * 9 8 6 12 12 C 1.38407 * 120.00232 * 107.50162 * 11 9 8 13 13 N 1.32487 * 119.22063 * 179.97438 * 12 11 9 14 14 C 1.32274 * 120.74646 * 179.97438 * 13 12 11 15 15 C 1.38610 * 119.19253 * 359.97438 * 14 13 12 16 16 C 1.50705 * 120.71837 * 179.97438 * 15 14 13 17 17 O 1.42894 * 109.47171 * 300.00414 * 16 15 14 18 18 Si 1.86298 * 109.46780 * 179.97438 * 16 15 14 19 19 C 1.38599 * 118.55695 * 0.27576 * 15 14 13 20 20 N 1.32271 * 119.20114 * 359.44099 * 19 15 14 21 21 C 1.53778 * 87.08059 * 334.57105 * 9 8 6 22 22 H 1.08995 * 109.47319 * 305.51597 * 1 2 3 23 23 H 1.09005 * 109.47197 * 65.51601 * 1 2 3 24 24 H 1.08997 * 109.46900 * 185.50881 * 1 2 3 25 25 H 1.08992 * 109.47131 * 60.00917 * 5 2 1 26 26 H 1.08993 * 109.47156 * 300.00008 * 5 2 1 27 27 H 1.09001 * 113.61037 * 25.43173 * 8 6 5 28 28 H 1.09004 * 113.61829 * 254.53440 * 8 6 5 29 29 H 0.96997 * 119.99855 * 287.50049 * 11 9 8 30 30 H 1.08001 * 120.40892 * 179.97438 * 14 13 12 31 31 H 1.09004 * 109.46779 * 60.00737 * 16 15 14 32 32 H 0.96709 * 113.99337 * 180.02562 * 17 16 15 33 33 H 1.48506 * 109.99834 * 60.00830 * 18 16 15 34 34 H 1.48502 * 110.00011 * 181.32094 * 18 16 15 35 35 H 1.08006 * 120.40061 * 179.72693 * 19 15 14 36 36 H 1.08998 * 113.61396 * 139.98711 * 21 9 8 37 37 H 1.09003 * 113.61255 * 270.87971 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2668 -0.8841 -1.0161 5 6 2.1886 -0.7356 1.6153 6 6 3.7054 -0.8183 1.7985 7 1 4.2216 -1.1750 0.9072 8 6 4.3236 0.4546 2.4005 9 6 5.2283 -0.4717 3.2302 10 1 5.3781 -0.1338 4.2556 11 7 6.4816 -0.8236 2.5583 12 6 7.6767 -0.2765 2.9920 13 7 8.8010 -0.6059 2.3734 14 6 9.9599 -0.1006 2.7625 15 6 9.9879 0.7831 3.8300 16 6 11.2892 1.3788 4.3022 17 8 12.1723 0.3319 4.7095 18 14 10.9654 2.5148 5.7428 19 6 8.7941 1.1019 4.4577 20 7 7.6689 0.5655 4.0150 21 6 4.1317 -1.5403 3.0876 22 1 -0.3634 0.5970 0.8364 23 1 -0.3634 0.4259 -0.9353 24 1 -0.3633 -1.0229 0.0987 25 1 1.7611 -1.7368 1.6665 26 1 1.7609 -0.1170 2.4042 27 1 3.6254 1.0366 3.0022 28 1 4.8669 1.0611 1.6757 29 1 6.4739 -1.4401 1.8095 30 1 10.8732 -0.3732 2.2545 31 1 11.7459 1.9441 3.4898 32 1 13.0313 0.6432 5.0266 33 1 10.3423 1.7567 6.8574 34 1 12.2365 3.1334 6.1976 35 1 8.7820 1.7837 5.2952 36 1 4.5201 -2.5445 2.9177 37 1 3.3811 -1.5038 3.8772 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_16534692_12175864.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:10:33 Heat of formation + Delta-G solvation = -3.979484 kcal Electronic energy + Delta-G solvation = -21911.965851 eV Core-core repulsion = 18399.219089 eV Total energy + Delta-G solvation = -3512.746762 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 300.098 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.06104 -40.58129 -38.08147 -37.95739 -36.99613 -35.75208 -34.62837 -32.58082 -31.02942 -30.29239 -26.88428 -26.60886 -25.85928 -24.08162 -23.02379 -20.60716 -19.93818 -19.45940 -18.68114 -18.22155 -17.80007 -17.25510 -17.08391 -16.61717 -16.48792 -16.11556 -15.93992 -15.52084 -15.27306 -15.17243 -14.53808 -14.33472 -14.28870 -14.20804 -13.97500 -13.68017 -13.36415 -13.17685 -13.05329 -12.95699 -12.62195 -12.33881 -12.18980 -11.99761 -11.75931 -11.67860 -11.50234 -11.33147 -11.05004 -10.65836 -9.95634 -9.06380 -5.03272 -1.07308 0.12290 0.23515 1.21642 1.53043 1.69684 1.79130 1.89845 2.58315 2.81414 2.91574 3.14128 3.25619 3.29478 3.30825 3.47905 3.65267 3.67601 3.73313 3.75437 3.80813 3.87928 3.96257 4.15481 4.17394 4.29846 4.48227 4.57961 4.59492 4.60523 4.71617 4.79409 4.88936 4.99438 5.04139 5.34050 5.83819 6.05813 6.36694 6.46415 7.34765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.659 4.659 2 S 2.418 3.582 3 O -0.934 6.934 4 O -0.939 6.939 5 C -0.601 4.601 6 C -0.107 4.107 7 H 0.104 0.896 8 C -0.152 4.152 9 C 0.136 3.864 10 H 0.114 0.886 11 N -0.680 5.680 12 C 0.569 3.431 13 N -0.568 5.568 14 C 0.225 3.775 15 C -0.246 4.246 16 C -0.054 4.054 17 O -0.538 6.538 18 Si 0.676 3.324 19 C 0.201 3.799 20 N -0.559 5.559 21 C -0.132 4.132 22 H 0.128 0.872 23 H 0.130 0.870 24 H 0.128 0.872 25 H 0.135 0.865 26 H 0.135 0.865 27 H 0.101 0.899 28 H 0.082 0.918 29 H 0.415 0.585 30 H 0.170 0.830 31 H 0.079 0.921 32 H 0.381 0.619 33 H -0.252 1.252 34 H -0.257 1.257 35 H 0.167 0.833 36 H 0.080 0.920 37 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.774 1.384 2.931 4.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.808 4.808 2 S 2.600 3.400 3 O -0.931 6.931 4 O -0.937 6.937 5 C -0.730 4.730 6 C -0.127 4.127 7 H 0.122 0.878 8 C -0.191 4.191 9 C 0.029 3.971 10 H 0.132 0.868 11 N -0.315 5.315 12 C 0.213 3.787 13 N -0.290 5.290 14 C 0.057 3.943 15 C -0.254 4.254 16 C -0.165 4.165 17 O -0.345 6.345 18 Si 0.576 3.424 19 C 0.034 3.966 20 N -0.281 5.281 21 C -0.171 4.171 22 H 0.147 0.853 23 H 0.148 0.852 24 H 0.146 0.854 25 H 0.154 0.846 26 H 0.154 0.846 27 H 0.119 0.881 28 H 0.101 0.899 29 H 0.253 0.747 30 H 0.187 0.813 31 H 0.097 0.903 32 H 0.230 0.770 33 H -0.177 1.177 34 H -0.182 1.182 35 H 0.184 0.816 36 H 0.098 0.902 37 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -3.628 1.131 2.699 4.661 hybrid contribution 1.186 -0.805 0.583 1.547 sum -2.442 0.326 3.283 4.104 Atomic orbital electron populations 1.30302 1.26953 1.11568 1.11981 1.07943 0.78266 0.75990 0.77784 1.93621 1.78814 1.34230 1.86417 1.93618 1.79023 1.67110 1.53907 1.30303 1.05040 1.14113 1.23495 1.22377 0.90675 0.99657 0.99960 0.87780 1.23687 0.99139 0.95991 1.00241 1.21802 0.81684 0.95801 0.97793 0.86812 1.43797 1.01835 1.49250 1.36660 1.19320 0.86366 0.86827 0.86174 1.67964 0.98295 1.29746 1.32973 1.22800 0.94772 0.86773 0.90002 1.20632 0.95619 1.06740 1.02372 1.24406 0.89857 0.95235 1.07039 1.86583 1.29015 1.33222 1.85717 0.95285 0.85607 0.83035 0.78455 1.22723 0.86445 0.92601 0.94867 1.67918 1.30753 1.14032 1.15403 1.23382 0.97893 0.98769 0.97075 0.85304 0.85160 0.85368 0.84628 0.84621 0.88081 0.89907 0.74662 0.81319 0.90339 0.77031 1.17679 1.18187 0.81598 0.90151 0.87853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 2.91 10.62 101.05 1.07 3.98 16 2 S 2.42 -3.93 5.35 -107.50 -0.58 -4.51 16 3 O -0.93 -2.22 18.10 -57.83 -1.05 -3.27 16 4 O -0.94 -2.54 18.10 -57.83 -1.05 -3.58 16 5 C -0.60 2.59 5.64 37.16 0.21 2.80 16 6 C -0.11 0.22 3.53 -89.81 -0.32 -0.09 16 7 H 0.10 -0.16 8.13 -51.93 -0.42 -0.58 16 8 C -0.15 0.15 7.43 -25.92 -0.19 -0.04 16 9 C 0.14 -0.10 4.33 -67.12 -0.29 -0.39 16 10 H 0.11 -0.01 7.37 -51.93 -0.38 -0.40 16 11 N -0.68 -0.68 5.41 -55.01 -0.30 -0.98 16 12 C 0.57 1.86 8.43 -322.81 -2.72 -0.86 16 13 N -0.57 -2.11 10.46 -13.93 -0.15 -2.25 16 14 C 0.22 0.48 10.92 -17.22 -0.19 0.29 16 15 C -0.25 -0.29 5.43 -104.35 -0.57 -0.85 16 16 C -0.05 0.05 2.84 36.01 0.10 0.15 16 17 O -0.54 -0.14 12.76 -35.23 -0.45 -0.59 16 18 Si 0.68 -1.16 29.87 -169.99 -5.08 -6.24 16 19 C 0.20 0.27 9.92 -17.23 -0.17 0.10 16 20 N -0.56 -1.63 9.13 -13.93 -0.13 -1.76 16 21 C -0.13 0.36 7.39 -25.92 -0.19 0.17 16 22 H 0.13 -0.79 8.14 -51.93 -0.42 -1.21 16 23 H 0.13 -0.53 8.14 -51.92 -0.42 -0.95 16 24 H 0.13 -0.77 8.14 -51.93 -0.42 -1.20 16 25 H 0.14 -0.87 8.14 -51.93 -0.42 -1.29 16 26 H 0.14 -0.88 7.84 -51.93 -0.41 -1.29 16 27 H 0.10 -0.24 7.90 -51.93 -0.41 -0.65 16 28 H 0.08 0.07 8.14 -51.93 -0.42 -0.35 16 29 H 0.42 0.01 8.82 -40.82 -0.36 -0.35 16 30 H 0.17 0.02 8.06 -52.49 -0.42 -0.40 16 31 H 0.08 -0.21 7.96 -51.93 -0.41 -0.63 16 32 H 0.38 -1.40 8.74 45.56 0.40 -1.00 16 33 H -0.25 -0.35 7.11 56.52 0.40 0.05 16 34 H -0.26 -0.08 7.11 56.52 0.40 0.32 16 35 H 0.17 -0.22 5.04 -52.48 -0.26 -0.48 16 36 H 0.08 -0.22 8.14 -51.93 -0.42 -0.64 16 37 H 0.10 -0.43 8.10 -51.93 -0.42 -0.85 16 LS Contribution 326.68 15.07 4.92 4.92 Total: 0.00 -12.97 326.68 -11.93 -24.90 By element: Atomic # 1 Polarization: -7.06 SS G_CDS: -4.84 Total: -11.90 kcal Atomic # 6 Polarization: 8.50 SS G_CDS: -3.25 Total: 5.25 kcal Atomic # 7 Polarization: -4.42 SS G_CDS: -0.57 Total: -4.99 kcal Atomic # 8 Polarization: -4.90 SS G_CDS: -2.54 Total: -7.44 kcal Atomic # 14 Polarization: -1.16 SS G_CDS: -5.08 Total: -6.24 kcal Atomic # 16 Polarization: -3.93 SS G_CDS: -0.58 Total: -4.51 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -12.97 -11.93 -24.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16534692_12175864.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.925 kcal (2) G-P(sol) polarization free energy of solvation -12.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds