Wall clock time and date at job start Mon Mar 8 2021 07:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 O 1.42105 * 108.57604 * 2 1 4 4 O 1.42096 * 108.58199 * 228.97629 * 2 1 3 5 5 C 1.81401 * 101.91900 * 114.48418 * 2 1 3 6 6 C 1.52999 * 109.46895 * 180.02562 * 5 2 1 7 7 H 1.09005 * 112.91011 * 316.25258 * 6 5 2 8 8 C 1.53781 * 113.61879 * 87.50509 * 6 5 2 9 9 C 1.53780 * 87.08348 * 139.97945 * 8 6 5 10 10 H 1.09005 * 113.68637 * 220.00573 * 9 8 6 11 11 N 1.46496 * 113.61292 * 89.12020 * 9 8 6 12 12 C 1.38407 * 120.00232 * 107.50162 * 11 9 8 13 13 N 1.32487 * 119.22063 * 179.97438 * 12 11 9 14 14 C 1.32274 * 120.74646 * 179.97438 * 13 12 11 15 15 C 1.38610 * 119.19253 * 359.97438 * 14 13 12 16 16 C 1.50705 * 120.71837 * 179.97438 * 15 14 13 17 17 O 1.42894 * 109.47171 * 300.00414 * 16 15 14 18 18 Si 1.86298 * 109.46780 * 179.97438 * 16 15 14 19 19 C 1.38599 * 118.55695 * 0.27576 * 15 14 13 20 20 N 1.32271 * 119.20114 * 359.44099 * 19 15 14 21 21 C 1.53778 * 87.08059 * 334.57105 * 9 8 6 22 22 H 1.08995 * 109.47319 * 305.51597 * 1 2 3 23 23 H 1.09005 * 109.47197 * 65.51601 * 1 2 3 24 24 H 1.08997 * 109.46900 * 185.50881 * 1 2 3 25 25 H 1.08992 * 109.47131 * 60.00917 * 5 2 1 26 26 H 1.08993 * 109.47156 * 300.00008 * 5 2 1 27 27 H 1.09001 * 113.61037 * 25.43173 * 8 6 5 28 28 H 1.09004 * 113.61829 * 254.53440 * 8 6 5 29 29 H 0.96997 * 119.99855 * 287.50049 * 11 9 8 30 30 H 1.08001 * 120.40892 * 179.97438 * 14 13 12 31 31 H 1.09004 * 109.46779 * 60.00737 * 16 15 14 32 32 H 0.96709 * 113.99337 * 180.02562 * 17 16 15 33 33 H 1.48506 * 109.99834 * 60.00830 * 18 16 15 34 34 H 1.48502 * 110.00011 * 181.32094 * 18 16 15 35 35 H 1.08006 * 120.40061 * 179.72693 * 19 15 14 36 36 H 1.08998 * 113.61396 * 139.98711 * 21 9 8 37 37 H 1.09003 * 113.61255 * 270.87971 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2668 -0.8841 -1.0161 5 6 2.1886 -0.7356 1.6153 6 6 3.7054 -0.8183 1.7985 7 1 4.2216 -1.1750 0.9072 8 6 4.3236 0.4546 2.4005 9 6 5.2283 -0.4717 3.2302 10 1 5.3781 -0.1338 4.2556 11 7 6.4816 -0.8236 2.5583 12 6 7.6767 -0.2765 2.9920 13 7 8.8010 -0.6059 2.3734 14 6 9.9599 -0.1006 2.7625 15 6 9.9879 0.7831 3.8300 16 6 11.2892 1.3788 4.3022 17 8 12.1723 0.3319 4.7095 18 14 10.9654 2.5148 5.7428 19 6 8.7941 1.1019 4.4577 20 7 7.6689 0.5655 4.0150 21 6 4.1317 -1.5403 3.0876 22 1 -0.3634 0.5970 0.8364 23 1 -0.3634 0.4259 -0.9353 24 1 -0.3633 -1.0229 0.0987 25 1 1.7611 -1.7368 1.6665 26 1 1.7609 -0.1170 2.4042 27 1 3.6254 1.0366 3.0022 28 1 4.8669 1.0611 1.6757 29 1 6.4739 -1.4401 1.8095 30 1 10.8732 -0.3732 2.2545 31 1 11.7459 1.9441 3.4898 32 1 13.0313 0.6432 5.0266 33 1 10.3423 1.7567 6.8574 34 1 12.2365 3.1334 6.1976 35 1 8.7820 1.7837 5.2952 36 1 4.5201 -2.5445 2.9177 37 1 3.3811 -1.5038 3.8772 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_16534692_12175864.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:10:33 Heat of formation + Delta-G solvation = -10.305262 kcal Electronic energy + Delta-G solvation = -21912.240157 eV Core-core repulsion = 18399.219089 eV Total energy + Delta-G solvation = -3513.021068 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 300.098 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.15616 -40.48180 -38.05185 -37.95284 -36.98591 -35.76181 -34.76791 -32.56703 -30.81796 -30.03866 -26.76729 -26.58608 -25.94871 -23.99115 -23.06688 -20.51364 -19.85301 -19.49868 -18.66796 -18.24906 -17.65910 -17.13504 -16.96639 -16.62031 -16.46183 -16.18123 -15.92605 -15.47269 -15.24838 -15.06089 -14.57753 -14.10304 -14.00330 -13.96373 -13.89953 -13.52366 -13.34641 -13.12146 -13.00571 -12.94480 -12.47142 -12.33340 -12.13902 -11.93069 -11.87446 -11.70433 -11.40052 -11.25193 -10.92246 -10.62557 -10.06478 -9.12439 -4.91300 -0.88362 0.01485 0.10769 1.30953 1.61255 1.76046 1.93816 1.96704 2.71557 2.78159 3.10054 3.13916 3.37535 3.42370 3.48245 3.59987 3.64032 3.73781 3.82691 3.88645 4.10075 4.11387 4.17880 4.22953 4.42960 4.54633 4.55920 4.71628 4.80237 4.83865 4.84434 4.99167 5.02729 5.05405 5.14158 5.35596 5.76845 6.01230 6.34808 6.63267 7.22595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.644 4.644 2 S 2.408 3.592 3 O -0.987 6.987 4 O -0.996 6.996 5 C -0.581 4.581 6 C -0.115 4.115 7 H 0.090 0.910 8 C -0.154 4.154 9 C 0.127 3.873 10 H 0.108 0.892 11 N -0.678 5.678 12 C 0.552 3.448 13 N -0.592 5.592 14 C 0.211 3.789 15 C -0.248 4.248 16 C -0.061 4.061 17 O -0.559 6.559 18 Si 0.756 3.244 19 C 0.193 3.807 20 N -0.572 5.572 21 C -0.116 4.116 22 H 0.154 0.846 23 H 0.126 0.874 24 H 0.152 0.848 25 H 0.167 0.833 26 H 0.168 0.832 27 H 0.118 0.882 28 H 0.054 0.946 29 H 0.416 0.584 30 H 0.183 0.817 31 H 0.102 0.898 32 H 0.397 0.603 33 H -0.295 1.295 34 H -0.281 1.281 35 H 0.188 0.812 36 H 0.081 0.919 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.040 1.227 4.219 5.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.796 4.796 2 S 2.597 3.403 3 O -0.984 6.984 4 O -0.993 6.993 5 C -0.713 4.713 6 C -0.134 4.134 7 H 0.108 0.892 8 C -0.193 4.193 9 C 0.021 3.979 10 H 0.126 0.874 11 N -0.314 5.314 12 C 0.195 3.805 13 N -0.314 5.314 14 C 0.044 3.956 15 C -0.256 4.256 16 C -0.171 4.171 17 O -0.370 6.370 18 Si 0.661 3.339 19 C 0.026 3.974 20 N -0.294 5.294 21 C -0.155 4.155 22 H 0.172 0.828 23 H 0.145 0.855 24 H 0.170 0.830 25 H 0.185 0.815 26 H 0.186 0.814 27 H 0.136 0.864 28 H 0.073 0.927 29 H 0.255 0.745 30 H 0.200 0.800 31 H 0.119 0.881 32 H 0.248 0.752 33 H -0.222 1.222 34 H -0.207 1.207 35 H 0.205 0.795 36 H 0.100 0.900 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -4.861 0.994 3.934 6.332 hybrid contribution 1.580 -0.770 0.254 1.776 sum -3.281 0.224 4.188 5.325 Atomic orbital electron populations 1.30138 1.22684 1.13732 1.13017 1.07782 0.79657 0.74462 0.78388 1.93554 1.80715 1.36667 1.87470 1.93546 1.80983 1.67769 1.57024 1.30150 1.03612 1.16180 1.21311 1.22382 0.92213 0.98949 0.99881 0.89220 1.23734 0.99413 0.96278 0.99913 1.21957 0.81513 0.97165 0.97255 0.87419 1.43947 1.01914 1.48907 1.36669 1.19619 0.86925 0.87331 0.86612 1.67976 0.98970 1.30730 1.33774 1.23146 0.94879 0.87049 0.90546 1.20857 0.96558 1.06291 1.01869 1.24605 0.89068 0.94999 1.08408 1.86535 1.30209 1.34225 1.85996 0.94352 0.83081 0.80931 0.75575 1.23156 0.86313 0.92711 0.95269 1.67953 1.31507 1.14383 1.15595 1.23370 0.97186 0.97946 0.97013 0.82770 0.85512 0.82970 0.81498 0.81382 0.86405 0.92703 0.74546 0.79974 0.88053 0.75169 1.22231 1.20745 0.79534 0.90018 0.85404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 6.75 10.62 113.37 1.20 7.95 16 2 S 2.41 -6.34 5.35 -56.49 -0.30 -6.64 16 3 O -0.99 -6.58 18.10 -127.37 -2.31 -8.88 16 4 O -1.00 -7.36 18.10 -127.37 -2.30 -9.66 16 5 C -0.58 5.99 5.64 71.98 0.41 6.40 16 6 C -0.11 0.48 3.53 -10.27 -0.04 0.44 16 7 H 0.09 -0.12 8.13 -2.38 -0.02 -0.14 16 8 C -0.15 0.18 7.43 31.12 0.23 0.41 16 9 C 0.13 -0.10 4.33 45.52 0.20 0.10 16 10 H 0.11 0.04 7.37 -2.38 -0.02 0.03 16 11 N -0.68 -2.54 5.41 -327.94 -1.77 -4.31 16 12 C 0.55 4.58 8.43 261.49 2.20 6.78 16 13 N -0.59 -5.44 10.46 -197.98 -2.07 -7.51 16 14 C 0.21 1.14 10.92 84.72 0.93 2.06 16 15 C -0.25 -0.71 5.43 -19.69 -0.11 -0.82 16 16 C -0.06 0.13 2.84 71.24 0.20 0.34 16 17 O -0.56 -0.18 12.76 -148.98 -1.90 -2.08 16 18 Si 0.76 -2.78 29.87 68.60 2.05 -0.74 16 19 C 0.19 0.65 9.92 84.71 0.84 1.49 16 20 N -0.57 -4.09 9.13 -197.99 -1.81 -5.90 16 21 C -0.12 0.75 7.39 31.12 0.23 0.98 16 22 H 0.15 -2.35 8.14 -2.39 -0.02 -2.37 16 23 H 0.13 -1.12 8.14 -2.39 -0.02 -1.14 16 24 H 0.15 -2.27 8.14 -2.39 -0.02 -2.29 16 25 H 0.17 -2.69 8.14 -2.39 -0.02 -2.71 16 26 H 0.17 -2.76 7.84 -2.39 -0.02 -2.78 16 27 H 0.12 -0.60 7.90 -2.39 -0.02 -0.62 16 28 H 0.05 0.25 8.14 -2.39 -0.02 0.23 16 29 H 0.42 0.91 8.82 -92.71 -0.82 0.09 16 30 H 0.18 0.21 8.06 -2.91 -0.02 0.18 16 31 H 0.10 -0.67 7.96 -2.38 -0.02 -0.69 16 32 H 0.40 -3.09 8.74 -74.05 -0.65 -3.73 16 33 H -0.29 -1.02 7.11 99.48 0.71 -0.32 16 34 H -0.28 -0.09 7.11 99.48 0.71 0.61 16 35 H 0.19 -0.44 5.04 -2.91 -0.01 -0.46 16 36 H 0.08 -0.50 8.14 -2.39 -0.02 -0.52 16 37 H 0.13 -1.42 8.10 -2.39 -0.02 -1.44 16 Total: 0.00 -33.20 326.68 -4.44 -37.64 By element: Atomic # 1 Polarization: -17.74 SS G_CDS: -0.32 Total: -18.06 kcal Atomic # 6 Polarization: 19.85 SS G_CDS: 6.30 Total: 26.15 kcal Atomic # 7 Polarization: -12.07 SS G_CDS: -5.65 Total: -17.72 kcal Atomic # 8 Polarization: -14.12 SS G_CDS: -6.51 Total: -20.63 kcal Atomic # 14 Polarization: -2.78 SS G_CDS: 2.05 Total: -0.74 kcal Atomic # 16 Polarization: -6.34 SS G_CDS: -0.30 Total: -6.64 kcal Total: -33.20 -4.44 -37.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16534692_12175864.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.331 kcal (2) G-P(sol) polarization free energy of solvation -33.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds