Wall clock time and date at job start Mon Mar 8 2021 07:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.33333 * 125.95302 * 2 1 4 4 C 1.50703 * 122.71000 * 0.02562 * 3 2 1 5 5 O 1.42900 * 109.47144 * 330.00254 * 4 3 2 6 6 Si 1.86293 * 109.47188 * 210.00345 * 4 3 2 7 7 N 1.32118 * 114.58008 * 180.02562 * 3 2 1 8 8 C 1.29689 * 116.86699 * 359.97438 * 7 3 2 9 9 N 1.38608 * 124.94747 * 179.97438 * 8 7 3 10 10 C 1.46506 * 119.99688 * 180.02562 * 9 8 7 11 11 H 1.08992 * 112.90684 * 336.24689 * 10 9 8 12 12 C 1.54049 * 113.61276 * 107.61778 * 10 9 8 13 13 C 1.53781 * 87.08031 * 89.07129 * 12 10 9 14 14 H 1.08999 * 113.61181 * 270.87794 * 13 12 10 15 15 C 1.52991 * 113.61611 * 139.97702 * 13 12 10 16 16 S 1.81402 * 109.47238 * 87.50017 * 15 13 12 17 17 C 1.81407 * 101.92159 * 179.97438 * 16 15 13 18 18 O 1.42090 * 108.58085 * 294.48796 * 16 15 13 19 19 O 1.42106 * 108.57713 * 65.51675 * 16 15 13 20 20 C 1.53781 * 87.08070 * 25.42738 * 13 12 10 21 21 S 1.70962 * 110.09835 * 0.24299 * 8 7 3 22 22 H 1.09005 * 109.47153 * 89.99727 * 1 2 3 23 23 H 1.08996 * 109.46990 * 210.00144 * 1 2 3 24 24 H 1.09002 * 109.47435 * 330.00166 * 1 2 3 25 25 H 1.08999 * 109.46740 * 90.00001 * 4 3 2 26 26 H 0.96706 * 114.00052 * 300.00564 * 5 4 3 27 27 H 1.48505 * 110.00100 * 180.02562 * 6 4 3 28 28 H 1.48501 * 109.99895 * 301.31853 * 6 4 3 29 29 H 0.97002 * 120.00423 * 359.97438 * 9 8 7 30 30 H 1.09005 * 113.62125 * 334.52173 * 12 10 9 31 31 H 1.08996 * 113.68970 * 203.62749 * 12 10 9 32 32 H 1.08997 * 109.47550 * 207.50008 * 15 13 12 33 33 H 1.09002 * 109.47334 * 327.50277 * 15 13 12 34 34 H 1.09008 * 109.46589 * 60.00638 * 17 16 15 35 35 H 1.08996 * 109.47107 * 179.97438 * 17 16 15 36 36 H 1.08995 * 109.47335 * 300.00400 * 17 16 15 37 37 H 1.09002 * 113.61445 * 89.11830 * 20 13 12 38 38 H 1.09002 * 113.61408 * 219.93560 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2898 1.0793 0.0000 4 6 1.7414 2.4831 0.0006 5 8 0.4811 2.5024 -0.6726 6 14 2.9319 3.6152 -0.8778 7 7 3.5850 0.8188 -0.0005 8 6 3.9315 -0.4310 -0.0005 9 7 5.2384 -0.8926 -0.0015 10 6 5.5065 -2.3329 -0.0019 11 1 4.6810 -2.9182 0.4031 12 6 6.0384 -2.8612 -1.3476 13 6 7.4494 -2.5436 -0.8249 14 1 7.7801 -1.5295 -1.0494 15 6 8.4907 -3.6038 -1.1886 16 16 9.1975 -3.2241 -2.8156 17 6 10.3810 -4.5811 -3.0360 18 8 8.1751 -3.3509 -3.7941 19 8 9.9206 -2.0043 -2.7216 20 6 6.8752 -2.7048 0.5925 21 16 2.5413 -1.4260 -0.0065 22 1 -0.3634 0.0000 -1.0277 23 1 -0.3633 -0.8899 0.5138 24 1 -0.3634 0.8900 0.5138 25 1 1.6096 2.8212 1.0284 26 1 0.5229 2.2127 -1.5943 27 1 2.4030 5.0028 -0.8836 28 1 4.2560 3.5796 -0.2063 29 1 5.9756 -0.2621 -0.0027 30 1 5.7426 -2.2537 -2.2030 31 1 5.8593 -3.9252 -1.5020 32 1 9.2830 -3.6067 -0.4401 33 1 8.0157 -4.5844 -1.2188 34 1 9.8506 -5.5332 -3.0117 35 1 10.8853 -4.4710 -3.9959 36 1 11.1175 -4.5549 -2.2330 37 1 6.9243 -3.7262 0.9699 38 1 7.2561 -1.9720 1.3039 There are 53 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 53 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_16534692_15704122.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:10:45 Heat of formation + Delta-G solvation = -24.659745 kcal Electronic energy + Delta-G solvation = -22441.209178 eV Core-core repulsion = 18926.606192 eV Total energy + Delta-G solvation = -3514.602987 eV No. of doubly occupied orbitals = 53 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 319.074 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.21767 -40.52120 -37.96396 -37.79017 -36.99397 -35.51543 -32.69220 -30.99643 -30.15356 -29.05335 -26.76818 -25.68976 -24.56601 -24.06048 -20.95737 -20.52929 -19.77003 -18.86645 -17.88800 -17.81246 -17.45495 -17.04873 -16.87722 -16.67374 -16.42334 -15.70810 -15.68520 -15.37102 -15.03068 -14.37756 -14.20415 -14.03678 -13.92748 -13.87677 -13.80692 -13.47923 -13.34334 -13.13809 -13.01829 -12.97139 -12.77939 -12.46862 -12.36467 -12.15146 -12.04609 -11.86347 -11.38481 -11.18629 -10.85260 -10.63968 -10.35869 -10.04750 -8.65505 -4.98353 -0.89523 -0.03820 0.13587 0.73411 1.28059 1.69550 1.81560 1.87207 1.92776 2.09340 2.76884 3.12226 3.32514 3.36300 3.42397 3.53255 3.60925 3.66882 4.07837 4.09791 4.16164 4.20783 4.28471 4.31825 4.44609 4.48998 4.69638 4.75693 4.79628 4.85088 4.89875 4.96082 4.98772 5.02329 5.08899 5.20745 5.36099 5.69944 6.24331 6.65740 6.92751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.245 4.245 3 C 0.051 3.949 4 C -0.027 4.027 5 O -0.538 6.538 6 Si 0.783 3.217 7 N -0.575 5.575 8 C 0.307 3.693 9 N -0.677 5.677 10 C 0.116 3.884 11 H 0.108 0.892 12 C -0.158 4.158 13 C -0.117 4.117 14 H 0.089 0.911 15 C -0.581 4.581 16 S 2.407 3.593 17 C -0.645 4.645 18 O -0.985 6.985 19 O -0.997 6.997 20 C -0.113 4.113 21 S 0.129 5.871 22 H 0.086 0.914 23 H 0.064 0.936 24 H 0.085 0.915 25 H 0.115 0.885 26 H 0.394 0.606 27 H -0.291 1.291 28 H -0.303 1.303 29 H 0.412 0.588 30 H 0.062 0.938 31 H 0.124 0.876 32 H 0.167 0.833 33 H 0.171 0.829 34 H 0.154 0.846 35 H 0.125 0.875 36 H 0.151 0.849 37 H 0.133 0.867 38 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.562 -9.593 1.498 9.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.368 4.368 3 C -0.079 4.079 4 C -0.140 4.140 5 O -0.345 6.345 6 Si 0.690 3.310 7 N -0.303 5.303 8 C -0.064 4.064 9 N -0.317 5.317 10 C 0.010 3.990 11 H 0.126 0.874 12 C -0.198 4.198 13 C -0.136 4.136 14 H 0.107 0.893 15 C -0.713 4.713 16 S 2.596 3.404 17 C -0.797 4.797 18 O -0.982 6.982 19 O -0.994 6.994 20 C -0.152 4.152 21 S 0.378 5.622 22 H 0.104 0.896 23 H 0.083 0.917 24 H 0.104 0.896 25 H 0.132 0.868 26 H 0.245 0.755 27 H -0.219 1.219 28 H -0.231 1.231 29 H 0.250 0.750 30 H 0.081 0.919 31 H 0.143 0.857 32 H 0.184 0.816 33 H 0.189 0.811 34 H 0.173 0.827 35 H 0.144 0.856 36 H 0.170 0.830 37 H 0.151 0.849 38 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 1.964 -8.847 1.504 9.186 hybrid contribution 0.431 0.572 0.915 1.162 sum 2.395 -8.274 2.419 8.947 Atomic orbital electron populations 1.20242 0.85197 1.03072 1.03670 1.25446 1.02255 0.92950 1.16147 1.20240 0.86667 0.97756 1.03257 1.24365 0.92663 0.95137 1.01877 1.86473 1.27934 1.89701 1.30407 0.93236 0.74073 0.74451 0.89213 1.65959 1.18119 1.17811 1.28409 1.23526 0.92735 0.91647 0.98493 1.43804 1.01301 1.07166 1.79403 1.22205 0.99815 0.78809 0.98179 0.87425 1.23879 0.94768 1.03959 0.97146 1.22368 0.93658 0.98024 0.99548 0.89262 1.30149 1.10925 1.09481 1.20697 1.07811 0.76671 0.77317 0.78596 1.30148 1.17445 1.19163 1.12915 1.93554 1.58047 1.87534 1.59100 1.93551 1.74004 1.44316 1.87544 1.23352 0.91868 1.05078 0.94901 1.83731 0.95293 1.09548 1.73595 0.89556 0.91736 0.89648 0.86828 0.75539 1.21912 1.23098 0.74955 0.91889 0.85746 0.81553 0.81137 0.82716 0.85598 0.83048 0.84927 0.89934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 0.03 8.95 71.23 0.64 0.67 16 2 C -0.25 -0.86 6.50 24.57 0.16 -0.70 16 3 C 0.05 0.31 5.92 41.41 0.25 0.55 16 4 C -0.03 -0.11 2.82 71.24 0.20 0.10 16 5 O -0.54 -0.37 9.89 -148.98 -1.47 -1.85 16 6 Si 0.78 3.88 32.08 68.60 2.20 6.08 16 7 N -0.58 -4.97 8.95 -189.86 -1.70 -6.66 16 8 C 0.31 1.50 8.24 179.32 1.48 2.97 16 9 N -0.68 -0.28 5.42 -327.45 -1.78 -2.06 16 10 C 0.12 -0.61 4.33 45.61 0.20 -0.41 16 11 H 0.11 -0.72 7.06 -2.39 -0.02 -0.74 16 12 C -0.16 0.81 7.44 31.21 0.23 1.04 16 13 C -0.12 0.79 3.53 -10.27 -0.04 0.75 16 14 H 0.09 -0.30 8.13 -2.39 -0.02 -0.32 16 15 C -0.58 7.19 5.64 71.98 0.41 7.59 16 16 S 2.41 -9.75 5.35 -56.49 -0.30 -10.06 16 17 C -0.64 7.42 10.62 113.37 1.20 8.62 16 18 O -0.99 -4.85 18.10 -127.37 -2.30 -7.16 16 19 O -1.00 -6.34 18.10 -127.37 -2.30 -8.64 16 20 C -0.11 1.09 7.38 31.12 0.23 1.32 16 21 S 0.13 0.21 21.69 -56.49 -1.23 -1.02 16 22 H 0.09 -0.30 8.14 -2.38 -0.02 -0.32 16 23 H 0.06 -0.10 8.14 -2.39 -0.02 -0.12 16 24 H 0.08 0.09 6.61 -2.39 -0.02 0.08 16 25 H 0.11 0.56 7.96 -2.39 -0.02 0.54 16 26 H 0.39 -2.51 8.68 -74.05 -0.64 -3.16 16 27 H -0.29 -2.80 7.11 99.48 0.71 -2.09 16 28 H -0.30 -4.09 7.11 99.48 0.71 -3.38 16 29 H 0.41 0.15 8.83 -92.71 -0.82 -0.67 16 30 H 0.06 0.02 8.14 -2.38 -0.02 0.00 16 31 H 0.12 -1.19 7.89 -2.39 -0.02 -1.21 16 32 H 0.17 -2.96 8.14 -2.39 -0.02 -2.98 16 33 H 0.17 -3.23 7.84 -2.39 -0.02 -3.25 16 34 H 0.15 -2.54 8.14 -2.39 -0.02 -2.56 16 35 H 0.13 -1.21 8.14 -2.39 -0.02 -1.23 16 36 H 0.15 -2.39 8.14 -2.39 -0.02 -2.41 16 37 H 0.13 -1.95 8.10 -2.39 -0.02 -1.97 16 38 H 0.08 -0.72 8.14 -2.39 -0.02 -0.74 16 Total: 0.00 -31.10 341.41 -4.26 -35.36 By element: Atomic # 1 Polarization: -26.19 SS G_CDS: -0.33 Total: -26.52 kcal Atomic # 6 Polarization: 17.57 SS G_CDS: 4.95 Total: 22.52 kcal Atomic # 7 Polarization: -5.25 SS G_CDS: -3.47 Total: -8.72 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: -6.08 Total: -17.65 kcal Atomic # 14 Polarization: 3.88 SS G_CDS: 2.20 Total: 6.08 kcal Atomic # 16 Polarization: -9.55 SS G_CDS: -1.53 Total: -11.08 kcal Total: -31.10 -4.26 -35.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16534692_15704122.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.699 kcal (2) G-P(sol) polarization free energy of solvation -31.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds