Wall clock time and date at job start Mon Mar 8 2021 07:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 O 1.42100 * 108.57578 * 2 1 4 4 O 1.42100 * 108.58270 * 228.97219 * 2 1 3 5 5 C 1.81404 * 101.92098 * 114.48581 * 2 1 3 6 6 C 1.52993 * 109.46958 * 180.02562 * 5 2 1 7 7 H 1.08996 * 112.85155 * 316.19451 * 6 5 2 8 8 C 1.53783 * 113.69053 * 87.46633 * 6 5 2 9 9 C 1.53788 * 87.07966 * 139.98685 * 8 6 5 10 10 H 1.09003 * 113.68769 * 89.13123 * 9 8 6 11 11 N 1.46501 * 113.61210 * 220.01714 * 9 8 6 12 12 C 1.39147 * 119.99756 * 252.49695 * 11 9 8 13 13 N 1.32337 * 119.71981 * 0.02562 * 12 11 9 14 14 C 1.32013 * 121.64395 * 180.02562 * 13 12 11 15 15 C 1.37978 * 120.90230 * 0.02562 * 14 13 12 16 16 C 1.50698 * 120.32730 * 179.97438 * 15 14 13 17 17 O 1.42908 * 109.47032 * 245.02059 * 16 15 14 18 18 Si 1.86299 * 109.47197 * 5.01661 * 16 15 14 19 19 C 1.38905 * 119.35055 * 359.97438 * 15 14 13 20 20 C 1.38452 * 118.48175 * 0.02562 * 19 15 14 21 21 F 1.35102 * 120.47043 * 179.97438 * 20 19 15 22 22 C 1.53774 * 87.08348 * 334.56699 * 9 8 6 23 23 H 1.08999 * 109.47206 * 305.51144 * 1 2 3 24 24 H 1.09000 * 109.46964 * 65.51257 * 1 2 3 25 25 H 1.09003 * 109.47268 * 185.51024 * 1 2 3 26 26 H 1.08998 * 109.46757 * 60.00014 * 5 2 1 27 27 H 1.08996 * 109.46994 * 300.00413 * 5 2 1 28 28 H 1.08998 * 113.61494 * 25.44574 * 8 6 5 29 29 H 1.08988 * 113.61422 * 254.53725 * 8 6 5 30 30 H 0.97000 * 119.99960 * 72.50822 * 11 9 8 31 31 H 1.07997 * 119.54544 * 180.02562 * 14 13 12 32 32 H 1.09000 * 109.47749 * 125.01962 * 16 15 14 33 33 H 0.96694 * 113.99970 * 179.97438 * 17 16 15 34 34 H 1.48495 * 110.00151 * 178.68038 * 18 16 15 35 35 H 1.48506 * 110.00232 * 300.00736 * 18 16 15 36 36 H 1.07995 * 120.76458 * 179.72087 * 19 15 14 37 37 H 1.08998 * 113.61331 * 139.97901 * 22 9 8 38 38 H 1.08994 * 113.61827 * 270.88493 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2668 -0.8841 -1.0161 5 6 2.1887 -0.7356 1.6153 6 6 3.7054 -0.8184 1.7985 7 1 4.2205 -1.1760 0.9070 8 6 4.3255 0.4541 2.3995 9 6 5.2296 -0.4730 3.2290 10 1 6.1620 -0.7368 2.7298 11 7 5.4311 -0.0172 4.6067 12 6 6.6591 0.5118 4.9918 13 7 7.6409 0.6011 4.1090 14 6 8.8210 1.0961 4.4333 15 6 9.0750 1.5411 5.7144 16 6 10.4271 2.1033 6.0706 17 8 11.0595 1.2523 7.0287 18 14 11.4813 2.2037 4.5379 19 6 8.0723 1.4657 6.6727 20 6 6.8448 0.9421 6.3041 21 9 5.8413 0.8495 7.2040 22 6 4.1317 -1.5404 3.0877 23 1 -0.3633 0.5969 0.8365 24 1 -0.3633 0.4260 -0.9352 25 1 -0.3634 -1.0229 0.0987 26 1 1.7610 -1.7369 1.6665 27 1 1.7610 -0.1171 2.4042 28 1 3.6285 1.0371 3.0015 29 1 4.8690 1.0594 1.6742 30 1 4.7086 -0.0844 5.2503 31 1 9.5981 1.1536 3.6856 32 1 10.3060 3.1003 6.4942 33 1 11.9361 1.5534 7.3042 34 1 12.8062 2.7862 4.8699 35 1 11.6540 0.8506 3.9506 36 1 8.2476 1.8033 7.6835 37 1 4.5188 -2.5451 2.9178 38 1 3.3817 -1.5026 3.8776 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_16534808_17656566.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:11:12 Heat of formation + Delta-G solvation = -67.724739 kcal Electronic energy + Delta-G solvation = -24066.173660 eV Core-core repulsion = 20146.634632 eV Total energy + Delta-G solvation = -3919.539028 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 317.093 amu Computer time = 2.06 seconds Orbital eigenvalues (eV) -49.83442 -41.44807 -40.37586 -38.03011 -37.95716 -36.99704 -35.84973 -33.25360 -32.00213 -30.87308 -30.15837 -26.87733 -26.56751 -25.32248 -23.42602 -22.59609 -20.97329 -19.89485 -19.15242 -18.69331 -18.40588 -17.98159 -17.78333 -17.19074 -17.09432 -16.82070 -16.54480 -16.15478 -16.01069 -15.71150 -15.19840 -15.01512 -14.55941 -14.37972 -14.26222 -14.19657 -14.00434 -13.85010 -13.75773 -13.59433 -13.35444 -13.05437 -12.95958 -12.78964 -12.57188 -12.18001 -12.05515 -12.00836 -11.58209 -11.35168 -11.08348 -10.68118 -10.64112 -10.45598 -8.73088 -5.00825 -1.07597 -0.01629 0.17014 1.21337 1.54609 1.69507 1.90588 1.97735 2.55157 2.58829 2.91249 3.09074 3.18107 3.25910 3.28116 3.40157 3.51183 3.64801 3.65175 3.73538 3.79890 3.89360 3.93286 4.06868 4.11766 4.26026 4.29631 4.50801 4.57243 4.58549 4.62894 4.64205 4.73413 4.87260 4.99710 5.03285 5.14151 5.46444 5.97542 6.20602 6.38555 6.99122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.659 4.659 2 S 2.420 3.580 3 O -0.933 6.933 4 O -0.938 6.938 5 C -0.600 4.600 6 C -0.102 4.102 7 H 0.111 0.889 8 C -0.153 4.153 9 C 0.135 3.865 10 H 0.124 0.876 11 N -0.706 5.706 12 C 0.390 3.610 13 N -0.510 5.510 14 C 0.151 3.849 15 C -0.162 4.162 16 C -0.063 4.063 17 O -0.537 6.537 18 Si 0.681 3.319 19 C -0.037 4.037 20 C -0.021 4.021 21 F -0.134 7.134 22 C -0.134 4.134 23 H 0.128 0.872 24 H 0.130 0.870 25 H 0.128 0.872 26 H 0.136 0.864 27 H 0.133 0.867 28 H 0.091 0.909 29 H 0.086 0.914 30 H 0.412 0.588 31 H 0.164 0.836 32 H 0.078 0.922 33 H 0.381 0.619 34 H -0.258 1.258 35 H -0.251 1.251 36 H 0.148 0.852 37 H 0.082 0.918 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.312 0.914 1.541 2.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.808 4.808 2 S 2.602 3.398 3 O -0.930 6.930 4 O -0.935 6.935 5 C -0.729 4.729 6 C -0.122 4.122 7 H 0.129 0.871 8 C -0.192 4.192 9 C 0.030 3.970 10 H 0.142 0.858 11 N -0.338 5.338 12 C 0.152 3.848 13 N -0.227 5.227 14 C -0.007 4.007 15 C -0.167 4.167 16 C -0.173 4.173 17 O -0.345 6.345 18 Si 0.581 3.419 19 C -0.063 4.063 20 C -0.047 4.047 21 F -0.113 7.113 22 C -0.173 4.173 23 H 0.146 0.854 24 H 0.149 0.851 25 H 0.146 0.854 26 H 0.154 0.846 27 H 0.151 0.849 28 H 0.110 0.890 29 H 0.104 0.896 30 H 0.249 0.751 31 H 0.181 0.819 32 H 0.096 0.904 33 H 0.229 0.771 34 H -0.183 1.183 35 H -0.175 1.175 36 H 0.166 0.834 37 H 0.101 0.899 38 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.776 0.268 -0.592 1.891 hybrid contribution -0.477 -0.279 3.061 3.110 sum -2.253 -0.010 2.469 3.343 Atomic orbital electron populations 1.30306 1.26987 1.11565 1.11973 1.07900 0.78232 0.75972 0.77694 1.93621 1.78807 1.34220 1.86377 1.93621 1.78999 1.67099 1.53817 1.30296 1.04885 1.14107 1.23576 1.22058 0.90711 0.99545 0.99878 0.87116 1.23732 0.99339 0.96306 0.99825 1.22494 0.98669 0.94257 0.81582 0.85797 1.44554 1.10425 1.66397 1.12444 1.18452 0.87954 0.91021 0.87371 1.67307 1.00547 1.20675 1.34151 1.22336 0.92946 0.91091 0.94284 1.19812 0.95318 1.06941 0.94592 1.24567 0.95509 0.95130 1.02135 1.86595 1.35469 1.52136 1.60291 0.95096 0.80863 0.84829 0.81074 1.21262 0.89889 0.94459 1.00713 1.17969 0.87974 1.11572 0.87183 1.91485 1.58709 1.94852 1.66272 1.23412 0.98119 0.99081 0.96725 0.85361 0.85127 0.85365 0.84602 0.84860 0.89048 0.89556 0.75052 0.81933 0.90386 0.77085 1.18267 1.17527 0.83446 0.89914 0.89123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 2.95 10.62 101.05 1.07 4.03 16 2 S 2.42 -4.36 5.35 -107.50 -0.58 -4.94 16 3 O -0.93 -2.03 18.10 -57.83 -1.05 -3.08 16 4 O -0.94 -2.28 18.10 -57.83 -1.05 -3.33 16 5 C -0.60 2.56 5.65 37.15 0.21 2.77 16 6 C -0.10 0.22 3.65 -89.81 -0.33 -0.11 16 7 H 0.11 -0.22 8.13 -51.93 -0.42 -0.64 16 8 C -0.15 0.15 7.43 -25.91 -0.19 -0.04 16 9 C 0.14 -0.11 4.27 -67.12 -0.29 -0.40 16 10 H 0.12 0.02 7.41 -51.93 -0.38 -0.37 16 11 N -0.71 0.00 5.51 -53.06 -0.29 -0.29 16 12 C 0.39 0.79 7.49 -154.85 -1.16 -0.37 16 13 N -0.51 -1.18 9.13 -12.37 -0.11 -1.30 16 14 C 0.15 0.16 9.84 -17.57 -0.17 -0.01 16 15 C -0.16 -0.15 5.39 -104.47 -0.56 -0.71 16 16 C -0.06 0.05 2.81 36.00 0.10 0.15 16 17 O -0.54 -0.27 12.82 -35.23 -0.45 -0.72 16 18 Si 0.68 -1.13 29.88 -169.99 -5.08 -6.21 16 19 C -0.04 -0.05 9.82 -39.26 -0.39 -0.44 16 20 C -0.02 -0.04 7.35 -39.09 -0.29 -0.33 16 21 F -0.13 -0.32 16.65 2.25 0.04 -0.28 16 22 C -0.13 0.35 7.39 -25.92 -0.19 0.16 16 23 H 0.13 -0.78 8.14 -51.92 -0.42 -1.21 16 24 H 0.13 -0.54 8.14 -51.92 -0.42 -0.97 16 25 H 0.13 -0.78 8.14 -51.92 -0.42 -1.20 16 26 H 0.14 -0.87 8.14 -51.92 -0.42 -1.29 16 27 H 0.13 -0.83 7.85 -51.93 -0.41 -1.24 16 28 H 0.09 -0.14 7.90 -51.93 -0.41 -0.55 16 29 H 0.09 0.01 8.14 -51.94 -0.42 -0.41 16 30 H 0.41 -0.56 8.20 -40.82 -0.33 -0.90 16 31 H 0.16 -0.17 4.87 -52.49 -0.26 -0.42 16 32 H 0.08 -0.20 7.96 -51.93 -0.41 -0.61 16 33 H 0.38 -1.32 8.74 45.56 0.40 -0.92 16 34 H -0.26 -0.10 7.11 56.52 0.40 0.31 16 35 H -0.25 -0.32 7.05 56.52 0.40 0.08 16 36 H 0.15 0.03 8.06 -52.49 -0.42 -0.39 16 37 H 0.08 -0.22 8.14 -51.93 -0.42 -0.65 16 38 H 0.09 -0.33 8.08 -51.93 -0.42 -0.75 16 LS Contribution 337.43 15.07 5.08 5.08 Total: 0.00 -12.03 337.43 -10.47 -22.50 By element: Atomic # 1 Polarization: -7.33 SS G_CDS: -4.81 Total: -12.14 kcal Atomic # 6 Polarization: 6.89 SS G_CDS: -2.18 Total: 4.71 kcal Atomic # 7 Polarization: -1.19 SS G_CDS: -0.41 Total: -1.59 kcal Atomic # 8 Polarization: -4.59 SS G_CDS: -2.54 Total: -7.13 kcal Atomic # 9 Polarization: -0.32 SS G_CDS: 0.04 Total: -0.28 kcal Atomic # 14 Polarization: -1.13 SS G_CDS: -5.08 Total: -6.21 kcal Atomic # 16 Polarization: -4.36 SS G_CDS: -0.58 Total: -4.94 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -12.03 -10.47 -22.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16534808_17656566.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.224 kcal (2) G-P(sol) polarization free energy of solvation -12.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.06 seconds