Wall clock time and date at job start Mon Mar 8 2021 07:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 O 1.42100 * 108.57578 * 2 1 4 4 O 1.42100 * 108.58270 * 228.97219 * 2 1 3 5 5 C 1.81404 * 101.92098 * 114.48581 * 2 1 3 6 6 C 1.52993 * 109.46958 * 180.02562 * 5 2 1 7 7 H 1.08996 * 112.85155 * 316.19451 * 6 5 2 8 8 C 1.53783 * 113.69053 * 87.46633 * 6 5 2 9 9 C 1.53788 * 87.07966 * 139.98685 * 8 6 5 10 10 H 1.09003 * 113.68769 * 89.13123 * 9 8 6 11 11 N 1.46501 * 113.61210 * 220.01714 * 9 8 6 12 12 C 1.39147 * 119.99756 * 252.49695 * 11 9 8 13 13 N 1.32337 * 119.71981 * 0.02562 * 12 11 9 14 14 C 1.32013 * 121.64395 * 180.02562 * 13 12 11 15 15 C 1.37978 * 120.90230 * 0.02562 * 14 13 12 16 16 C 1.50698 * 120.32730 * 179.97438 * 15 14 13 17 17 O 1.42908 * 109.47032 * 245.02059 * 16 15 14 18 18 Si 1.86299 * 109.47197 * 5.01661 * 16 15 14 19 19 C 1.38905 * 119.35055 * 359.97438 * 15 14 13 20 20 C 1.38452 * 118.48175 * 0.02562 * 19 15 14 21 21 F 1.35102 * 120.47043 * 179.97438 * 20 19 15 22 22 C 1.53774 * 87.08348 * 334.56699 * 9 8 6 23 23 H 1.08999 * 109.47206 * 305.51144 * 1 2 3 24 24 H 1.09000 * 109.46964 * 65.51257 * 1 2 3 25 25 H 1.09003 * 109.47268 * 185.51024 * 1 2 3 26 26 H 1.08998 * 109.46757 * 60.00014 * 5 2 1 27 27 H 1.08996 * 109.46994 * 300.00413 * 5 2 1 28 28 H 1.08998 * 113.61494 * 25.44574 * 8 6 5 29 29 H 1.08988 * 113.61422 * 254.53725 * 8 6 5 30 30 H 0.97000 * 119.99960 * 72.50822 * 11 9 8 31 31 H 1.07997 * 119.54544 * 180.02562 * 14 13 12 32 32 H 1.09000 * 109.47749 * 125.01962 * 16 15 14 33 33 H 0.96694 * 113.99970 * 179.97438 * 17 16 15 34 34 H 1.48495 * 110.00151 * 178.68038 * 18 16 15 35 35 H 1.48506 * 110.00232 * 300.00736 * 18 16 15 36 36 H 1.07995 * 120.76458 * 179.72087 * 19 15 14 37 37 H 1.08998 * 113.61331 * 139.97901 * 22 9 8 38 38 H 1.08994 * 113.61827 * 270.88493 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2668 -0.8841 -1.0161 5 6 2.1887 -0.7356 1.6153 6 6 3.7054 -0.8184 1.7985 7 1 4.2205 -1.1760 0.9070 8 6 4.3255 0.4541 2.3995 9 6 5.2296 -0.4730 3.2290 10 1 6.1620 -0.7368 2.7298 11 7 5.4311 -0.0172 4.6067 12 6 6.6591 0.5118 4.9918 13 7 7.6409 0.6011 4.1090 14 6 8.8210 1.0961 4.4333 15 6 9.0750 1.5411 5.7144 16 6 10.4271 2.1033 6.0706 17 8 11.0595 1.2523 7.0287 18 14 11.4813 2.2037 4.5379 19 6 8.0723 1.4657 6.6727 20 6 6.8448 0.9421 6.3041 21 9 5.8413 0.8495 7.2040 22 6 4.1317 -1.5404 3.0877 23 1 -0.3633 0.5969 0.8365 24 1 -0.3633 0.4260 -0.9352 25 1 -0.3634 -1.0229 0.0987 26 1 1.7610 -1.7369 1.6665 27 1 1.7610 -0.1171 2.4042 28 1 3.6285 1.0371 3.0015 29 1 4.8690 1.0594 1.6742 30 1 4.7086 -0.0844 5.2503 31 1 9.5981 1.1536 3.6856 32 1 10.3060 3.1003 6.4942 33 1 11.9361 1.5534 7.3042 34 1 12.8062 2.7862 4.8699 35 1 11.6540 0.8506 3.9506 36 1 8.2476 1.8033 7.6835 37 1 4.5188 -2.5451 2.9178 38 1 3.3817 -1.5026 3.8776 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_16534808_17656566.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:11:11 Heat of formation + Delta-G solvation = -73.227645 kcal Electronic energy + Delta-G solvation = -24066.412284 eV Core-core repulsion = 20146.634632 eV Total energy + Delta-G solvation = -3919.777652 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 317.093 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.96592 -41.48441 -40.28591 -38.00386 -37.94162 -36.97694 -35.83109 -33.31783 -31.93474 -30.65865 -29.93998 -26.75975 -26.52895 -25.35860 -23.38750 -22.61205 -20.85829 -19.77268 -19.16921 -18.68360 -18.40116 -18.06518 -17.64812 -17.07471 -16.98799 -16.91816 -16.51528 -16.06954 -15.96123 -15.71463 -15.13375 -15.04144 -14.48854 -14.23901 -14.10972 -14.01277 -13.90067 -13.83448 -13.59303 -13.43731 -13.24003 -13.04835 -12.97268 -12.71137 -12.54682 -12.10303 -11.97874 -11.90936 -11.46904 -11.25626 -10.97681 -10.72588 -10.71542 -10.42942 -8.76507 -4.89802 -0.88107 -0.10352 0.09583 1.30114 1.61708 1.93657 1.96528 1.99174 2.48657 2.78678 3.01496 3.14137 3.22068 3.37832 3.44339 3.48007 3.65409 3.69262 3.81041 3.85714 4.04953 4.10490 4.11623 4.19468 4.34932 4.36865 4.46502 4.56635 4.69744 4.74461 4.79821 4.82868 4.98379 4.99425 5.02829 5.06692 5.22322 5.47088 5.97585 6.20624 6.61445 6.95728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.645 4.645 2 S 2.413 3.587 3 O -0.985 6.985 4 O -0.992 6.992 5 C -0.583 4.583 6 C -0.108 4.108 7 H 0.101 0.899 8 C -0.156 4.156 9 C 0.129 3.871 10 H 0.109 0.891 11 N -0.700 5.700 12 C 0.380 3.620 13 N -0.528 5.528 14 C 0.144 3.856 15 C -0.167 4.167 16 C -0.069 4.069 17 O -0.559 6.559 18 Si 0.757 3.243 19 C -0.041 4.041 20 C -0.035 4.035 21 F -0.138 7.138 22 C -0.120 4.120 23 H 0.152 0.848 24 H 0.127 0.873 25 H 0.152 0.848 26 H 0.167 0.833 27 H 0.162 0.838 28 H 0.099 0.901 29 H 0.065 0.935 30 H 0.418 0.582 31 H 0.177 0.823 32 H 0.101 0.899 33 H 0.397 0.603 34 H -0.281 1.281 35 H -0.293 1.293 36 H 0.158 0.842 37 H 0.086 0.914 38 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.644 0.679 2.712 4.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.797 4.797 2 S 2.602 3.398 3 O -0.982 6.982 4 O -0.990 6.990 5 C -0.714 4.714 6 C -0.128 4.128 7 H 0.119 0.881 8 C -0.195 4.195 9 C 0.023 3.977 10 H 0.127 0.873 11 N -0.333 5.333 12 C 0.141 3.859 13 N -0.245 5.245 14 C -0.013 4.013 15 C -0.172 4.172 16 C -0.178 4.178 17 O -0.370 6.370 18 Si 0.662 3.338 19 C -0.067 4.067 20 C -0.061 4.061 21 F -0.117 7.117 22 C -0.160 4.160 23 H 0.170 0.830 24 H 0.146 0.854 25 H 0.170 0.830 26 H 0.185 0.815 27 H 0.180 0.820 28 H 0.118 0.882 29 H 0.084 0.916 30 H 0.257 0.743 31 H 0.194 0.806 32 H 0.119 0.881 33 H 0.247 0.753 34 H -0.208 1.208 35 H -0.221 1.221 36 H 0.176 0.824 37 H 0.104 0.896 38 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -3.098 0.060 0.561 3.149 hybrid contribution -0.055 -0.236 2.731 2.742 sum -3.154 -0.176 3.292 4.563 Atomic orbital electron populations 1.30149 1.22841 1.13704 1.12989 1.07658 0.79547 0.74429 0.78155 1.93555 1.80682 1.36627 1.87386 1.93550 1.80911 1.67736 1.56774 1.30152 1.03528 1.16132 1.21544 1.22075 0.92216 0.98701 0.99845 0.88091 1.23752 0.99524 0.96690 0.99582 1.22531 0.98691 0.95336 0.81119 0.87345 1.44608 1.09997 1.65846 1.12836 1.18639 0.88556 0.91224 0.87464 1.67337 1.01133 1.21421 1.34637 1.22643 0.92980 0.90748 0.94958 1.20012 0.96087 1.06757 0.94364 1.24740 0.94681 0.95805 1.02625 1.86546 1.36796 1.52989 1.60649 0.94204 0.78784 0.81661 0.79186 1.21463 0.89757 0.94180 1.01336 1.18081 0.88288 1.12463 0.87297 1.91465 1.58892 1.94979 1.66362 1.23377 0.97505 0.98423 0.96660 0.82976 0.85394 0.82977 0.81493 0.82001 0.88224 0.91609 0.74291 0.80608 0.88109 0.75253 1.20811 1.22088 0.82449 0.89570 0.87160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 6.84 10.62 113.37 1.20 8.05 16 2 S 2.41 -7.43 5.35 -56.49 -0.30 -7.73 16 3 O -0.99 -6.05 18.10 -127.37 -2.30 -8.35 16 4 O -0.99 -6.54 18.10 -127.37 -2.31 -8.85 16 5 C -0.58 5.89 5.65 71.98 0.41 6.30 16 6 C -0.11 0.47 3.65 -10.27 -0.04 0.43 16 7 H 0.10 -0.25 8.13 -2.39 -0.02 -0.27 16 8 C -0.16 0.17 7.43 31.12 0.23 0.40 16 9 C 0.13 -0.11 4.27 45.52 0.19 0.08 16 10 H 0.11 0.24 7.41 -2.39 -0.02 0.22 16 11 N -0.70 -0.35 5.51 -321.78 -1.77 -2.12 16 12 C 0.38 1.91 7.49 133.08 1.00 2.90 16 13 N -0.53 -3.16 9.13 -193.03 -1.76 -4.92 16 14 C 0.14 0.44 9.84 84.60 0.83 1.27 16 15 C -0.17 -0.36 5.39 -19.77 -0.11 -0.46 16 16 C -0.07 0.14 2.81 71.24 0.20 0.34 16 17 O -0.56 -0.43 12.82 -148.98 -1.91 -2.34 16 18 Si 0.76 -2.40 29.88 68.60 2.05 -0.35 16 19 C -0.04 -0.13 9.82 22.48 0.22 0.09 16 20 C -0.03 -0.17 7.35 22.59 0.17 -0.01 16 21 F -0.14 -0.71 16.65 44.97 0.75 0.04 16 22 C -0.12 0.73 7.39 31.12 0.23 0.96 16 23 H 0.15 -2.28 8.14 -2.39 -0.02 -2.30 16 24 H 0.13 -1.17 8.14 -2.39 -0.02 -1.19 16 25 H 0.15 -2.28 8.14 -2.39 -0.02 -2.30 16 26 H 0.17 -2.65 8.14 -2.39 -0.02 -2.67 16 27 H 0.16 -2.50 7.85 -2.39 -0.02 -2.52 16 28 H 0.10 -0.30 7.90 -2.39 -0.02 -0.32 16 29 H 0.07 0.19 8.14 -2.39 -0.02 0.17 16 30 H 0.42 -1.19 8.20 -92.71 -0.76 -1.95 16 31 H 0.18 -0.19 4.87 -2.91 -0.01 -0.20 16 32 H 0.10 -0.65 7.96 -2.39 -0.02 -0.67 16 33 H 0.40 -2.90 8.74 -74.06 -0.65 -3.54 16 34 H -0.28 -0.22 7.11 99.48 0.71 0.49 16 35 H -0.29 -1.14 7.05 99.48 0.70 -0.44 16 36 H 0.16 0.06 8.06 -2.91 -0.02 0.04 16 37 H 0.09 -0.54 8.14 -2.39 -0.02 -0.56 16 38 H 0.11 -1.08 8.08 -2.39 -0.02 -1.10 16 Total: 0.00 -30.11 337.43 -3.29 -33.40 By element: Atomic # 1 Polarization: -18.85 SS G_CDS: -0.27 Total: -19.12 kcal Atomic # 6 Polarization: 15.82 SS G_CDS: 4.54 Total: 20.35 kcal Atomic # 7 Polarization: -3.51 SS G_CDS: -3.53 Total: -7.05 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: -6.52 Total: -19.54 kcal Atomic # 9 Polarization: -0.71 SS G_CDS: 0.75 Total: 0.04 kcal Atomic # 14 Polarization: -2.40 SS G_CDS: 2.05 Total: -0.35 kcal Atomic # 16 Polarization: -7.43 SS G_CDS: -0.30 Total: -7.73 kcal Total: -30.11 -3.29 -33.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16534808_17656566.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.827 kcal (2) G-P(sol) polarization free energy of solvation -30.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds