Wall clock time and date at job start Mon Mar 8 2021 07:11:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.53003 * 109.46984 * 67.75996 * 3 2 1 5 5 H 1.09002 * 112.85017 * 45.32910 * 4 3 2 6 6 C 1.53781 * 113.61337 * 274.13322 * 4 3 2 7 7 C 1.54052 * 86.98687 * 219.98249 * 6 4 3 8 8 H 1.08993 * 113.62310 * 139.97739 * 7 6 4 9 9 N 1.46499 * 113.68672 * 270.87365 * 7 6 4 10 10 C 1.38605 * 120.00038 * 252.52599 * 9 7 6 11 11 N 1.29693 * 124.94901 * 0.02995 * 10 9 7 12 12 C 1.32122 * 116.86341 * 179.97438 * 11 10 9 13 13 C 1.33324 * 114.58311 * 359.97438 * 12 11 10 14 14 C 1.50707 * 125.95298 * 180.02562 * 13 12 11 15 15 O 1.42890 * 109.47127 * 64.99578 * 14 13 12 16 16 Si 1.86297 * 109.47175 * 184.99886 * 14 13 12 17 17 S 1.70970 * 124.94878 * 179.72075 * 10 9 7 18 18 C 1.53783 * 87.07848 * 25.42892 * 7 6 4 19 19 H 1.08997 * 109.47490 * 307.76041 * 3 2 1 20 20 H 1.09004 * 109.46976 * 187.75322 * 3 2 1 21 21 H 1.08999 * 113.61567 * 334.48261 * 6 4 3 22 22 H 1.08998 * 113.61196 * 105.38615 * 6 4 3 23 23 H 0.96999 * 120.00027 * 72.53534 * 9 7 6 24 24 H 1.08000 * 122.70799 * 180.02562 * 12 11 10 25 25 H 1.09002 * 109.46752 * 304.99569 * 14 13 12 26 26 H 0.96705 * 113.99826 * 60.00248 * 15 14 13 27 27 H 1.48497 * 110.00207 * 179.97438 * 16 14 13 28 28 H 1.48500 * 109.99844 * 301.31911 * 16 14 13 29 29 H 1.08992 * 113.61796 * 220.02286 * 18 7 6 30 30 H 1.09005 * 113.68996 * 89.12897 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1182 -0.5451 -1.3352 5 1 2.5933 -0.1243 -2.1928 6 6 3.2285 -2.0785 -1.3722 7 6 4.5443 -1.8840 -2.1494 8 1 5.3320 -2.5772 -1.8550 9 7 4.3647 -1.8103 -3.6015 10 6 4.7601 -2.8695 -4.4033 11 7 5.2971 -3.9682 -3.9714 12 6 5.6130 -4.8752 -4.8786 13 6 5.3292 -4.5265 -6.1338 14 6 5.5799 -5.3623 -7.3626 15 8 4.7685 -6.5374 -7.3130 16 14 5.1511 -4.3751 -8.8831 17 16 4.6042 -2.9212 -6.1051 18 6 4.6496 -0.5078 -1.4712 19 1 2.9717 -0.6284 0.8124 20 1 2.9709 1.0191 0.1386 21 1 3.3646 -2.5303 -0.3896 22 1 2.4424 -2.5588 -1.9549 23 1 3.9692 -1.0203 -4.0019 24 1 6.0639 -5.8230 -4.6240 25 1 6.6312 -5.6479 -7.3993 26 1 3.8188 -6.3584 -7.2786 27 1 5.3945 -5.1879 -10.1018 28 1 3.7285 -3.9524 -8.8297 29 1 5.0101 0.2791 -2.1337 30 1 5.1734 -0.5294 -0.5156 There are 42 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 42 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_16534924_15704118.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:11:21 Heat of formation + Delta-G solvation = 73.318836 kcal Electronic energy + Delta-G solvation = -15505.534004 eV Core-core repulsion = 12816.352630 eV Total energy + Delta-G solvation = -2689.181373 eV No. of doubly occupied orbitals = 42 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 252.067 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.05072 -40.13978 -38.03834 -37.52594 -35.29235 -31.67195 -30.67624 -26.72956 -26.48825 -25.14100 -23.90702 -21.41598 -20.12030 -19.56437 -18.53114 -18.11348 -17.05196 -16.51017 -16.46928 -15.99367 -15.80996 -15.65870 -15.34667 -14.97728 -14.50565 -14.04034 -13.93034 -13.75679 -13.34345 -13.09522 -12.89360 -12.49041 -12.42769 -12.05968 -11.79235 -11.61721 -11.08536 -11.00659 -10.85740 -10.28883 -10.21441 -8.71703 -5.03005 -0.05606 0.03576 0.67324 1.25861 1.54173 1.82662 1.87595 1.88366 1.97710 2.19618 3.09241 3.39080 3.54899 3.68302 3.74736 3.92167 3.94752 4.03420 4.43580 4.57948 4.67332 4.73984 4.78370 4.85967 4.93038 4.98437 5.12169 5.14328 5.23552 5.44016 5.94580 6.19155 6.42880 6.67457 7.02452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C 0.233 3.767 3 C -0.015 4.015 4 C -0.102 4.102 5 H 0.092 0.908 6 C -0.156 4.156 7 C 0.125 3.875 8 H 0.093 0.907 9 N -0.669 5.669 10 C 0.319 3.681 11 N -0.576 5.576 12 C 0.106 3.894 13 C -0.307 4.307 14 C -0.022 4.022 15 O -0.543 6.543 16 Si 0.723 3.277 17 S 0.106 5.894 18 C -0.117 4.117 19 H 0.137 0.863 20 H 0.144 0.856 21 H 0.107 0.893 22 H 0.046 0.954 23 H 0.423 0.577 24 H 0.179 0.821 25 H 0.136 0.864 26 H 0.385 0.615 27 H -0.275 1.275 28 H -0.268 1.268 29 H 0.089 0.911 30 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.909 4.955 0.794 7.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.198 5.198 2 C -0.083 4.083 3 C -0.054 4.054 4 C -0.122 4.122 5 H 0.111 0.889 6 C -0.195 4.195 7 C 0.018 3.982 8 H 0.111 0.889 9 N -0.308 5.308 10 C -0.052 4.052 11 N -0.302 5.302 12 C -0.045 4.045 13 C -0.430 4.430 14 C -0.135 4.135 15 O -0.351 6.351 16 Si 0.626 3.374 17 S 0.355 5.645 18 C -0.155 4.155 19 H 0.155 0.845 20 H 0.162 0.838 21 H 0.125 0.875 22 H 0.065 0.935 23 H 0.263 0.737 24 H 0.196 0.804 25 H 0.154 0.846 26 H 0.234 0.766 27 H -0.201 1.201 28 H -0.194 1.194 29 H 0.108 0.892 30 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 3.997 5.348 0.060 6.677 hybrid contribution -0.660 -1.446 0.427 1.646 sum 3.337 3.902 0.487 5.157 Atomic orbital electron populations 1.81316 1.15930 1.11628 1.10945 1.30175 0.96213 0.90840 0.91081 1.19733 0.78151 1.07391 1.00123 1.22551 0.97451 0.95338 0.96875 0.88945 1.23725 0.97528 0.96544 1.01684 1.22022 0.98133 1.00227 0.77865 0.88918 1.43828 1.65959 1.15733 1.05278 1.23936 0.95828 0.91881 0.93532 1.66484 1.23646 1.02562 1.37520 1.21478 0.97599 0.98549 0.86894 1.25596 1.17129 0.99693 1.00564 1.24264 0.99622 0.89299 1.00304 1.86590 1.22324 1.30657 1.95559 0.94375 0.83264 0.84569 0.75222 1.83935 1.61868 1.16208 1.02497 1.23364 0.94167 0.95177 1.02780 0.84508 0.83830 0.87468 0.93546 0.73719 0.80402 0.84601 0.76561 1.20105 1.19394 0.89207 0.85594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -4.89 18.54 20.01 0.37 -4.52 16 2 C 0.23 -0.13 15.42 89.44 1.38 1.25 16 3 C -0.01 0.18 5.53 28.79 0.16 0.34 16 4 C -0.10 1.16 3.48 -10.26 -0.04 1.12 16 5 H 0.09 -0.93 8.13 -2.39 -0.02 -0.95 16 6 C -0.16 1.03 7.45 31.21 0.23 1.26 16 7 C 0.13 -0.79 4.44 45.61 0.20 -0.59 16 8 H 0.09 -0.23 7.66 -2.39 -0.02 -0.25 16 9 N -0.67 2.82 5.42 -327.46 -1.78 1.04 16 10 C 0.32 0.41 8.09 179.32 1.45 1.86 16 11 N -0.58 -3.01 9.83 -202.02 -1.99 -4.99 16 12 C 0.11 0.38 11.24 83.54 0.94 1.32 16 13 C -0.31 -0.35 5.73 24.58 0.14 -0.21 16 14 C -0.02 0.01 2.99 71.24 0.21 0.22 16 15 O -0.54 -1.43 12.88 -148.98 -1.92 -3.35 16 16 Si 0.72 -0.89 31.07 68.60 2.13 1.24 16 17 S 0.11 -0.07 20.59 -56.49 -1.16 -1.24 16 18 C -0.12 1.56 7.39 31.12 0.23 1.79 16 19 H 0.14 -2.29 7.88 -2.39 -0.02 -2.31 16 20 H 0.14 -2.56 8.14 -2.38 -0.02 -2.58 16 21 H 0.11 -0.92 7.92 -2.39 -0.02 -0.94 16 22 H 0.05 -0.04 8.14 -2.39 -0.02 -0.06 16 23 H 0.42 -3.62 8.83 -92.71 -0.82 -4.44 16 24 H 0.18 0.31 8.06 -2.91 -0.02 0.28 16 25 H 0.14 -0.38 7.96 -2.39 -0.02 -0.40 16 26 H 0.39 -0.87 8.70 -74.05 -0.64 -1.52 16 27 H -0.28 -1.37 7.11 99.48 0.71 -0.66 16 28 H -0.27 -0.73 7.11 99.48 0.71 -0.03 16 29 H 0.09 -1.28 8.14 -2.39 -0.02 -1.29 16 30 H 0.13 -2.11 8.10 -2.38 -0.02 -2.13 16 Total: 0.00 -21.04 281.95 0.32 -20.72 By element: Atomic # 1 Polarization: -17.02 SS G_CDS: -0.24 Total: -17.27 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: 4.91 Total: 8.37 kcal Atomic # 7 Polarization: -5.08 SS G_CDS: -3.39 Total: -8.47 kcal Atomic # 8 Polarization: -1.43 SS G_CDS: -1.92 Total: -3.35 kcal Atomic # 14 Polarization: -0.89 SS G_CDS: 2.13 Total: 1.24 kcal Atomic # 16 Polarization: -0.07 SS G_CDS: -1.16 Total: -1.24 kcal Total: -21.04 0.32 -20.72 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16534924_15704118.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.040 kcal (2) G-P(sol) polarization free energy of solvation -21.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds