Wall clock time and date at job start Mon Mar 8 2021 07:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.33328 * 125.94652 * 2 1 4 4 C 1.50695 * 122.71122 * 359.97438 * 3 2 1 5 5 O 1.42897 * 109.47518 * 330.00360 * 4 3 2 6 6 Si 1.86301 * 109.47300 * 209.99623 * 4 3 2 7 7 N 1.32120 * 114.57684 * 179.75147 * 3 2 1 8 8 C 1.29692 * 116.86143 * 0.47714 * 7 3 2 9 9 N 1.38608 * 124.94412 * 179.81473 * 8 7 3 10 10 C 1.46506 * 120.00014 * 179.71694 * 9 8 7 11 11 H 1.09002 * 112.84852 * 334.66804 * 10 9 8 12 12 C 1.53781 * 113.61361 * 105.86205 * 10 9 8 13 13 C 1.54053 * 86.98540 * 89.16177 * 12 10 9 14 14 H 1.08991 * 113.68778 * 270.87264 * 13 12 10 15 15 C 1.52997 * 113.61632 * 139.97732 * 13 12 10 16 16 C 1.47199 * 109.47488 * 87.50716 * 15 13 12 17 17 N 9.22303 * 148.96336 * 229.67872 * 2 1 3 18 18 C 1.53773 * 113.61686 * 203.47044 * 10 9 8 19 19 S 1.70962 * 110.10335 * 359.54620 * 8 7 3 20 20 H 1.09001 * 109.46724 * 179.97438 * 1 2 3 21 21 H 1.08995 * 109.47387 * 299.97387 * 1 2 3 22 22 H 1.09000 * 109.46930 * 59.97876 * 1 2 3 23 23 H 1.09008 * 109.46793 * 89.99808 * 4 3 2 24 24 H 0.96705 * 113.99936 * 299.99510 * 5 4 3 25 25 H 1.48500 * 109.99428 * 58.68339 * 6 4 3 26 26 H 1.48494 * 110.00315 * 180.02562 * 6 4 3 27 27 H 0.97005 * 120.00459 * 359.71927 * 9 8 7 28 28 H 1.09001 * 113.61158 * 203.66864 * 12 10 9 29 29 H 1.08998 * 113.61196 * 334.56885 * 12 10 9 30 30 H 1.09003 * 109.47110 * 207.51069 * 15 13 12 31 31 H 1.08999 * 109.47327 * 327.50641 * 15 13 12 32 32 H 1.09007 * 113.61678 * 25.42910 * 18 10 9 33 33 H 1.09000 * 113.61916 * 156.33583 * 18 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2898 1.0794 0.0000 4 6 1.7413 2.4830 -0.0006 5 8 0.4814 2.5019 -0.6746 6 14 2.9325 3.6148 -0.8786 7 7 3.5850 0.8189 0.0052 8 6 3.9315 -0.4309 0.0000 9 7 5.2384 -0.8924 0.0004 10 6 5.5067 -2.3327 0.0004 11 1 4.6914 -2.9151 0.4298 12 6 5.9986 -2.8677 -1.3548 13 6 7.4258 -2.5479 -0.8711 14 1 7.7522 -1.5356 -1.1088 15 6 8.4564 -3.6107 -1.2574 16 6 8.9945 -3.3095 -2.5940 17 7 9.4097 -3.0770 -3.6255 18 6 6.8897 -2.7018 0.5621 19 16 2.5413 -1.4260 -0.0001 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5134 0.8902 22 1 -0.3633 0.5142 -0.8898 23 1 1.6087 2.8216 1.0271 24 1 0.5240 2.2119 -1.5961 25 1 3.1463 3.1454 -2.2711 26 1 2.4035 5.0023 -0.8854 27 1 5.9756 -0.2618 0.0008 28 1 5.8140 -3.9325 -1.4969 29 1 5.6786 -2.2645 -2.2045 30 1 9.2685 -3.6105 -0.5302 31 1 7.9802 -4.5910 -1.2699 32 1 7.2890 -1.9648 1.2590 33 1 6.9485 -3.7213 0.9431 There are 45 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 45 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_16534924_15704122.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:11:24 Heat of formation + Delta-G solvation = 68.979408 kcal Electronic energy + Delta-G solvation = -17412.709615 eV Core-core repulsion = 14567.802451 eV Total energy + Delta-G solvation = -2844.907164 eV No. of doubly occupied orbitals = 45 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.29155 -40.70525 -37.95019 -37.47893 -35.48336 -32.74472 -31.23221 -29.13140 -27.05174 -25.68751 -24.81045 -24.21655 -21.07650 -20.62262 -18.87580 -18.80742 -17.90488 -17.45690 -16.84350 -16.56383 -16.20255 -16.01506 -15.64883 -15.29021 -14.75573 -14.24679 -14.16721 -14.11686 -13.79064 -13.73076 -13.63313 -13.46066 -13.29948 -12.74806 -12.72539 -12.29161 -12.19922 -11.88604 -11.79782 -11.53162 -10.97917 -10.60928 -10.49846 -10.00596 -8.64692 -4.66983 0.00999 0.16724 0.77174 1.38518 1.74895 1.78479 1.80532 1.83435 1.95691 2.11945 2.81393 3.10561 3.28785 3.31613 3.44651 3.53078 3.57174 3.99534 4.12845 4.17466 4.28701 4.33349 4.41004 4.43744 4.49329 4.59759 4.74093 4.77175 4.78594 4.88572 4.93247 5.08622 5.28419 5.58840 6.21229 6.37371 6.57876 6.93896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C -0.242 4.242 3 C 0.067 3.933 4 C -0.041 4.041 5 O -0.526 6.526 6 Si 0.721 3.279 7 N -0.537 5.537 8 C 0.320 3.680 9 N -0.677 5.677 10 C 0.125 3.875 11 H 0.098 0.902 12 C -0.155 4.155 13 C -0.109 4.109 14 H 0.100 0.900 15 C -0.017 4.017 16 C 0.201 3.799 17 N -0.433 5.433 18 C -0.133 4.133 19 S 0.104 5.896 20 H 0.058 0.942 21 H 0.076 0.924 22 H 0.079 0.921 23 H 0.124 0.876 24 H 0.375 0.625 25 H -0.268 1.268 26 H -0.260 1.260 27 H 0.414 0.586 28 H 0.101 0.899 29 H 0.077 0.923 30 H 0.114 0.886 31 H 0.112 0.888 32 H 0.084 0.916 33 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.686 -4.320 4.807 6.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.364 4.364 3 C -0.063 4.063 4 C -0.154 4.154 5 O -0.331 6.331 6 Si 0.621 3.379 7 N -0.264 5.264 8 C -0.051 4.051 9 N -0.317 5.317 10 C 0.018 3.982 11 H 0.116 0.884 12 C -0.195 4.195 13 C -0.129 4.129 14 H 0.118 0.882 15 C -0.057 4.057 16 C -0.117 4.117 17 N -0.110 5.110 18 C -0.171 4.171 19 S 0.353 5.647 20 H 0.077 0.923 21 H 0.095 0.905 22 H 0.098 0.902 23 H 0.142 0.858 24 H 0.223 0.777 25 H -0.193 1.193 26 H -0.186 1.186 27 H 0.253 0.747 28 H 0.120 0.880 29 H 0.096 0.904 30 H 0.132 0.868 31 H 0.130 0.870 32 H 0.103 0.897 33 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 1.498 -4.088 3.172 5.387 hybrid contribution -0.806 0.317 -0.281 0.910 sum 0.692 -3.771 2.891 4.802 Atomic orbital electron populations 1.20147 0.86451 1.01687 1.03642 1.25153 1.01349 0.92898 1.17047 1.20066 0.86817 0.97150 1.02306 1.24459 0.91865 0.95367 1.03679 1.86624 1.28618 1.89037 1.28825 0.93648 0.86138 0.76459 0.81624 1.65723 1.17056 1.16472 1.27106 1.23236 0.91692 0.91470 0.98685 1.43565 1.01843 1.06172 1.80161 1.21931 0.98650 0.79942 0.97683 0.88384 1.23760 0.95171 1.02630 0.97893 1.22652 0.93841 0.99464 0.96910 0.88194 1.19329 0.99417 1.00755 0.86166 1.29204 0.93656 0.93790 0.95044 1.81305 1.09094 1.08277 1.12307 1.23368 0.93772 1.03878 0.96065 1.83960 0.96386 1.10435 1.73927 0.92276 0.90529 0.90217 0.85824 0.77668 1.19287 1.18595 0.74726 0.88048 0.90428 0.86820 0.87005 0.89696 0.87407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 0.00 8.91 36.01 0.32 0.32 16 2 C -0.24 -0.34 6.50 -36.02 -0.23 -0.58 16 3 C 0.07 0.14 5.91 -84.19 -0.50 -0.36 16 4 C -0.04 -0.05 2.94 36.00 0.11 0.06 16 5 O -0.53 -0.56 10.17 -35.23 -0.36 -0.92 16 6 Si 0.72 0.91 32.09 -169.99 -5.45 -4.54 16 7 N -0.54 -1.18 8.95 -11.36 -0.10 -1.28 16 8 C 0.32 0.21 8.24 -87.68 -0.72 -0.51 16 9 N -0.68 1.43 5.42 -54.99 -0.30 1.13 16 10 C 0.12 -0.54 4.28 -67.12 -0.29 -0.82 16 11 H 0.10 -0.42 7.11 -51.93 -0.37 -0.79 16 12 C -0.16 0.70 7.45 -25.78 -0.19 0.51 16 13 C -0.11 0.60 3.51 -89.66 -0.31 0.29 16 14 H 0.10 -0.47 8.12 -51.93 -0.42 -0.89 16 15 C -0.02 0.10 5.54 -29.52 -0.16 -0.07 16 16 C 0.20 -0.11 15.42 -20.76 -0.32 -0.43 16 17 N -0.43 -1.65 18.54 42.16 0.78 -0.87 16 18 C -0.13 0.85 7.38 -25.92 -0.19 0.66 16 19 S 0.10 0.01 21.71 -107.50 -2.33 -2.32 16 20 H 0.06 -0.04 8.14 -51.93 -0.42 -0.46 16 21 H 0.08 0.03 8.14 -51.93 -0.42 -0.39 16 22 H 0.08 -0.05 6.39 -51.93 -0.33 -0.38 16 23 H 0.12 0.04 7.96 -51.92 -0.41 -0.37 16 24 H 0.38 -0.48 8.13 45.56 0.37 -0.11 16 25 H -0.27 -1.11 7.11 56.52 0.40 -0.71 16 26 H -0.26 -0.93 7.11 56.52 0.40 -0.53 16 27 H 0.41 -1.19 8.83 -40.82 -0.36 -1.55 16 28 H 0.10 -0.58 7.90 -51.93 -0.41 -1.00 16 29 H 0.08 -0.18 8.14 -51.93 -0.42 -0.61 16 30 H 0.11 -0.86 8.14 -51.93 -0.42 -1.28 16 31 H 0.11 -0.85 7.85 -51.93 -0.41 -1.26 16 32 H 0.08 -0.53 8.14 -51.92 -0.42 -0.95 16 33 H 0.11 -0.85 8.10 -51.93 -0.42 -1.27 16 LS Contribution 298.27 15.07 4.49 4.49 Total: 0.00 -7.93 298.27 -9.84 -17.77 By element: Atomic # 1 Polarization: -8.46 SS G_CDS: -4.08 Total: -12.54 kcal Atomic # 6 Polarization: 1.56 SS G_CDS: -2.50 Total: -0.94 kcal Atomic # 7 Polarization: -1.40 SS G_CDS: 0.38 Total: -1.02 kcal Atomic # 8 Polarization: -0.56 SS G_CDS: -0.36 Total: -0.92 kcal Atomic # 14 Polarization: 0.91 SS G_CDS: -5.45 Total: -4.54 kcal Atomic # 16 Polarization: 0.01 SS G_CDS: -2.33 Total: -2.32 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -7.93 -9.84 -17.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16534924_15704122.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.753 kcal (2) G-P(sol) polarization free energy of solvation -7.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds