Wall clock time and date at job start Mon Mar 8 2021 07:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81408 * 1 3 3 C 1.81395 * 103.00229 * 2 1 4 4 C 1.52999 * 109.47166 * 179.97438 * 3 2 1 5 5 H 1.08999 * 112.84840 * 43.80428 * 4 3 2 6 6 C 1.53778 * 113.61430 * 174.99909 * 4 3 2 7 7 C 1.53784 * 87.08052 * 140.06625 * 6 4 3 8 8 H 1.09000 * 113.61180 * 219.93841 * 7 6 4 9 9 N 1.46500 * 113.61376 * 89.11655 * 7 6 4 10 10 C 1.38998 * 119.99748 * 155.00233 * 9 7 6 11 11 N 1.32394 * 119.70418 * 180.02562 * 10 9 7 12 12 C 1.31974 * 121.62532 * 180.02562 * 11 10 9 13 13 C 1.38023 * 120.85239 * 359.97438 * 12 11 10 14 14 C 1.50709 * 120.33181 * 180.02562 * 13 12 11 15 15 O 1.42897 * 109.46912 * 244.98160 * 14 13 12 16 16 Si 1.86295 * 109.47009 * 4.97946 * 14 13 12 17 17 C 1.38881 * 119.33177 * 0.02562 * 13 12 11 18 18 C 1.38293 * 118.50529 * 0.25125 * 17 13 12 19 19 C 1.53779 * 113.69185 * 272.53732 * 4 3 2 20 20 H 1.08997 * 109.46972 * 300.00186 * 1 2 3 21 21 H 1.09001 * 109.46791 * 59.99968 * 1 2 3 22 22 H 1.09001 * 109.47034 * 180.02562 * 1 2 3 23 23 H 1.09008 * 109.47014 * 59.99867 * 3 2 1 24 24 H 1.08997 * 109.47275 * 300.00442 * 3 2 1 25 25 H 1.09004 * 113.61095 * 25.52157 * 6 4 3 26 26 H 1.08992 * 113.61729 * 254.61654 * 6 4 3 27 27 H 0.96996 * 120.00050 * 335.00346 * 9 7 6 28 28 H 1.08002 * 119.57490 * 179.97438 * 12 11 10 29 29 H 1.08993 * 109.46581 * 124.97930 * 14 13 12 30 30 H 0.96699 * 114.00017 * 180.02562 * 15 14 13 31 31 H 1.48506 * 110.00317 * 299.99610 * 16 14 13 32 32 H 1.48497 * 110.00294 * 61.31843 * 16 14 13 33 33 H 1.08002 * 120.74409 * 179.97438 * 17 13 12 34 34 H 1.08004 * 120.45379 * 179.72761 * 18 17 13 35 35 H 1.08994 * 113.61619 * 105.45441 * 19 4 3 36 36 H 1.09009 * 113.61306 * 334.55544 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2222 1.7674 0.0000 4 6 3.7424 1.9398 0.0006 5 1 4.2450 1.2671 -0.6944 6 6 4.1964 3.4039 -0.1221 7 6 5.2883 3.0695 0.9079 8 1 5.4541 3.8594 1.6404 9 7 6.5317 2.5804 0.3071 10 6 7.7358 2.7260 0.9861 11 7 8.8561 2.2824 0.4376 12 6 10.0199 2.4003 1.0487 13 6 10.1100 2.9955 2.2907 14 6 11.4452 3.1246 2.9778 15 8 11.4458 2.3360 4.1694 16 14 12.7910 2.5267 1.8368 17 6 8.9580 3.4743 2.9009 18 6 7.7523 3.3313 2.2388 19 6 4.3628 1.9476 1.4077 20 1 -0.3633 0.5138 0.8899 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.8032 2.2371 0.8900 24 1 1.8032 2.2371 -0.8899 25 1 3.4598 4.1213 0.2398 26 1 4.5883 3.6585 -1.1068 27 1 6.5148 2.1551 -0.5645 28 1 10.9133 2.0262 0.5708 29 1 11.6228 4.1691 3.2332 30 1 12.2758 2.3718 4.6643 31 1 12.5603 1.1035 1.4810 32 1 12.8216 3.3590 0.6073 33 1 9.0021 3.9436 3.8726 34 1 6.8364 3.6883 2.6863 35 1 4.8890 1.0265 1.6580 36 1 3.6717 2.2669 2.1879 There are 46 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 46 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_16535150_13915762.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:12:55 Heat of formation + Delta-G solvation = 40.065794 kcal Electronic energy + Delta-G solvation = -17607.196379 eV Core-core repulsion = 14799.149859 eV Total energy + Delta-G solvation = -2808.046520 eV No. of doubly occupied orbitals = 46 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.55404 -40.37898 -37.79902 -35.55763 -33.43811 -31.71831 -30.35597 -29.67777 -26.87877 -26.30361 -25.00948 -23.76077 -22.44257 -20.38658 -18.89840 -18.38915 -17.90470 -17.36431 -16.64149 -16.46806 -16.14717 -15.72122 -15.52883 -15.11683 -15.06496 -14.87760 -14.46232 -14.25073 -13.99944 -13.86890 -13.74621 -13.66500 -13.37338 -13.09852 -12.32440 -12.13282 -11.96814 -11.72730 -11.38549 -11.05302 -10.92497 -10.70295 -10.54433 -10.16792 -8.70335 -8.66968 -4.96487 0.24295 0.44629 0.66030 1.31621 1.59368 1.66967 1.98405 2.00722 2.81604 3.28882 3.41416 3.48646 3.53269 3.57751 3.66033 3.85235 3.96565 4.11825 4.13052 4.14583 4.17513 4.24819 4.31139 4.36062 4.45906 4.54551 4.59860 4.64972 4.72617 4.74175 4.91343 4.95847 5.03593 5.12434 5.33308 5.52953 6.01317 6.51666 6.66287 7.15798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 S -0.264 6.264 3 C -0.075 4.075 4 C -0.094 4.094 5 H 0.099 0.901 6 C -0.136 4.136 7 C 0.129 3.871 8 H 0.100 0.900 9 N -0.704 5.704 10 C 0.410 3.590 11 N -0.539 5.539 12 C 0.151 3.849 13 C -0.190 4.190 14 C -0.056 4.056 15 O -0.548 6.548 16 Si 0.677 3.323 17 C -0.003 4.003 18 C -0.236 4.236 19 C -0.148 4.148 20 H 0.076 0.924 21 H 0.076 0.924 22 H 0.102 0.898 23 H 0.083 0.917 24 H 0.083 0.917 25 H 0.100 0.900 26 H 0.079 0.921 27 H 0.407 0.593 28 H 0.146 0.854 29 H 0.072 0.928 30 H 0.381 0.619 31 H -0.249 1.249 32 H -0.253 1.253 33 H 0.138 0.862 34 H 0.137 0.863 35 H 0.077 0.923 36 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.355 3.860 2.251 4.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S -0.038 6.038 3 C -0.223 4.223 4 C -0.114 4.114 5 H 0.117 0.883 6 C -0.176 4.176 7 C 0.022 3.978 8 H 0.118 0.882 9 N -0.336 5.336 10 C 0.174 3.826 11 N -0.256 5.256 12 C -0.006 4.006 13 C -0.195 4.195 14 C -0.167 4.167 15 O -0.354 6.354 16 Si 0.578 3.422 17 C -0.029 4.029 18 C -0.260 4.260 19 C -0.187 4.187 20 H 0.095 0.905 21 H 0.095 0.905 22 H 0.120 0.880 23 H 0.102 0.898 24 H 0.102 0.898 25 H 0.118 0.882 26 H 0.098 0.902 27 H 0.243 0.757 28 H 0.163 0.837 29 H 0.090 0.910 30 H 0.229 0.771 31 H -0.174 1.174 32 H -0.178 1.178 33 H 0.156 0.844 34 H 0.155 0.845 35 H 0.096 0.904 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.329 2.195 0.525 2.280 hybrid contribution -1.485 1.370 0.486 2.078 sum -1.814 3.564 1.011 4.125 Atomic orbital electron populations 1.23397 0.94057 1.06746 1.04923 1.87094 1.07473 1.11177 1.98043 1.23422 0.99288 0.94621 1.04990 1.22344 0.92572 0.97496 0.98959 0.88293 1.23411 0.97591 0.96330 1.00242 1.21836 0.82756 0.96824 0.96379 0.88183 1.44140 1.02418 1.65018 1.22020 1.18345 0.86010 0.89579 0.88626 1.67109 0.97730 1.23734 1.36995 1.22030 0.94157 0.93009 0.91419 1.20023 0.95354 1.06980 0.97102 1.24425 1.00626 0.98083 0.93586 1.86501 1.41285 1.70287 1.37315 0.95341 0.85933 0.80755 0.80139 1.21186 0.90598 0.92852 0.98248 1.21503 0.99721 1.08475 0.96337 1.23608 0.98579 1.00069 0.96473 0.90452 0.90462 0.87959 0.89832 0.89846 0.88202 0.90240 0.75713 0.83688 0.91010 0.77132 1.17353 1.17813 0.84438 0.84541 0.90406 0.88742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.12 10.76 101.05 1.09 1.20 16 2 S -0.26 -0.34 22.37 -107.50 -2.40 -2.75 16 3 C -0.08 0.09 5.78 37.16 0.21 0.30 16 4 C -0.09 0.13 3.53 -89.81 -0.32 -0.19 16 5 H 0.10 -0.01 8.13 -51.93 -0.42 -0.44 16 6 C -0.14 0.34 7.39 -25.92 -0.19 0.15 16 7 C 0.13 -0.17 4.11 -67.12 -0.28 -0.45 16 8 H 0.10 -0.21 6.11 -51.93 -0.32 -0.53 16 9 N -0.70 -0.66 5.44 -53.14 -0.29 -0.95 16 10 C 0.41 1.37 7.65 -155.03 -1.19 0.18 16 11 N -0.54 -2.82 10.39 -12.44 -0.13 -2.94 16 12 C 0.15 0.67 9.84 -17.57 -0.17 0.50 16 13 C -0.19 -0.58 5.39 -104.46 -0.56 -1.14 16 14 C -0.06 -0.02 2.81 36.01 0.10 0.08 16 15 O -0.55 -0.26 12.82 -35.23 -0.45 -0.72 16 16 Si 0.68 -0.43 29.88 -169.99 -5.08 -5.51 16 17 C 0.00 -0.01 9.83 -39.32 -0.39 -0.39 16 18 C -0.24 -0.47 9.28 -39.23 -0.36 -0.84 16 19 C -0.15 0.17 7.43 -25.92 -0.19 -0.03 16 20 H 0.08 -0.13 8.14 -51.93 -0.42 -0.55 16 21 H 0.08 -0.13 8.14 -51.92 -0.42 -0.55 16 22 H 0.10 -0.13 8.14 -51.92 -0.42 -0.56 16 23 H 0.08 -0.16 7.85 -51.92 -0.41 -0.57 16 24 H 0.08 -0.14 8.14 -51.93 -0.42 -0.56 16 25 H 0.10 -0.36 8.10 -51.93 -0.42 -0.79 16 26 H 0.08 -0.17 8.14 -51.93 -0.42 -0.59 16 27 H 0.41 0.31 8.82 -40.82 -0.36 -0.05 16 28 H 0.15 0.52 4.87 -52.49 -0.26 0.27 16 29 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 30 H 0.38 -1.76 8.74 45.56 0.40 -1.36 16 31 H -0.25 -0.65 7.05 56.52 0.40 -0.26 16 32 H -0.25 -0.47 7.11 56.52 0.40 -0.07 16 33 H 0.14 0.04 8.06 -52.49 -0.42 -0.39 16 34 H 0.14 -0.05 6.04 -52.48 -0.32 -0.36 16 35 H 0.08 0.07 8.14 -51.93 -0.42 -0.36 16 36 H 0.09 -0.19 7.90 -51.92 -0.41 -0.60 16 LS Contribution 310.29 15.07 4.68 4.68 Total: 0.00 -6.63 310.29 -11.01 -17.64 By element: Atomic # 1 Polarization: -3.74 SS G_CDS: -5.09 Total: -8.83 kcal Atomic # 6 Polarization: 1.63 SS G_CDS: -2.25 Total: -0.62 kcal Atomic # 7 Polarization: -3.48 SS G_CDS: -0.42 Total: -3.90 kcal Atomic # 8 Polarization: -0.26 SS G_CDS: -0.45 Total: -0.72 kcal Atomic # 14 Polarization: -0.43 SS G_CDS: -5.08 Total: -5.51 kcal Atomic # 16 Polarization: -0.34 SS G_CDS: -2.40 Total: -2.75 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -6.63 -11.01 -17.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16535150_13915762.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.707 kcal (2) G-P(sol) polarization free energy of solvation -6.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds