Wall clock time and date at job start Mon Mar 8 2021 07:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81408 * 1 3 3 C 1.81395 * 103.00229 * 2 1 4 4 C 1.52999 * 109.47166 * 179.97438 * 3 2 1 5 5 H 1.08999 * 112.84840 * 43.80428 * 4 3 2 6 6 C 1.53778 * 113.61430 * 174.99909 * 4 3 2 7 7 C 1.53784 * 87.08052 * 140.06625 * 6 4 3 8 8 H 1.09000 * 113.61180 * 219.93841 * 7 6 4 9 9 N 1.46500 * 113.61376 * 89.11655 * 7 6 4 10 10 C 1.38998 * 119.99748 * 155.00233 * 9 7 6 11 11 N 1.32394 * 119.70418 * 180.02562 * 10 9 7 12 12 C 1.31974 * 121.62532 * 180.02562 * 11 10 9 13 13 C 1.38023 * 120.85239 * 359.97438 * 12 11 10 14 14 C 1.50709 * 120.33181 * 180.02562 * 13 12 11 15 15 O 1.42897 * 109.46912 * 244.98160 * 14 13 12 16 16 Si 1.86295 * 109.47009 * 4.97946 * 14 13 12 17 17 C 1.38881 * 119.33177 * 0.02562 * 13 12 11 18 18 C 1.38293 * 118.50529 * 0.25125 * 17 13 12 19 19 C 1.53779 * 113.69185 * 272.53732 * 4 3 2 20 20 H 1.08997 * 109.46972 * 300.00186 * 1 2 3 21 21 H 1.09001 * 109.46791 * 59.99968 * 1 2 3 22 22 H 1.09001 * 109.47034 * 180.02562 * 1 2 3 23 23 H 1.09008 * 109.47014 * 59.99867 * 3 2 1 24 24 H 1.08997 * 109.47275 * 300.00442 * 3 2 1 25 25 H 1.09004 * 113.61095 * 25.52157 * 6 4 3 26 26 H 1.08992 * 113.61729 * 254.61654 * 6 4 3 27 27 H 0.96996 * 120.00050 * 335.00346 * 9 7 6 28 28 H 1.08002 * 119.57490 * 179.97438 * 12 11 10 29 29 H 1.08993 * 109.46581 * 124.97930 * 14 13 12 30 30 H 0.96699 * 114.00017 * 180.02562 * 15 14 13 31 31 H 1.48506 * 110.00317 * 299.99610 * 16 14 13 32 32 H 1.48497 * 110.00294 * 61.31843 * 16 14 13 33 33 H 1.08002 * 120.74409 * 179.97438 * 17 13 12 34 34 H 1.08004 * 120.45379 * 179.72761 * 18 17 13 35 35 H 1.08994 * 113.61619 * 105.45441 * 19 4 3 36 36 H 1.09009 * 113.61306 * 334.55544 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2222 1.7674 0.0000 4 6 3.7424 1.9398 0.0006 5 1 4.2450 1.2671 -0.6944 6 6 4.1964 3.4039 -0.1221 7 6 5.2883 3.0695 0.9079 8 1 5.4541 3.8594 1.6404 9 7 6.5317 2.5804 0.3071 10 6 7.7358 2.7260 0.9861 11 7 8.8561 2.2824 0.4376 12 6 10.0199 2.4003 1.0487 13 6 10.1100 2.9955 2.2907 14 6 11.4452 3.1246 2.9778 15 8 11.4458 2.3360 4.1694 16 14 12.7910 2.5267 1.8368 17 6 8.9580 3.4743 2.9009 18 6 7.7523 3.3313 2.2388 19 6 4.3628 1.9476 1.4077 20 1 -0.3633 0.5138 0.8899 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.8032 2.2371 0.8900 24 1 1.8032 2.2371 -0.8899 25 1 3.4598 4.1213 0.2398 26 1 4.5883 3.6585 -1.1068 27 1 6.5148 2.1551 -0.5645 28 1 10.9133 2.0262 0.5708 29 1 11.6228 4.1691 3.2332 30 1 12.2758 2.3718 4.6643 31 1 12.5603 1.1035 1.4810 32 1 12.8216 3.3590 0.6073 33 1 9.0021 3.9436 3.8726 34 1 6.8364 3.6883 2.6863 35 1 4.8890 1.0265 1.6580 36 1 3.6717 2.2669 2.1879 There are 46 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 46 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_16535150_13915762.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:12:55 Heat of formation + Delta-G solvation = 42.983324 kcal Electronic energy + Delta-G solvation = -17607.069866 eV Core-core repulsion = 14799.149859 eV Total energy + Delta-G solvation = -2807.920006 eV No. of doubly occupied orbitals = 46 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.66159 -40.35722 -37.80108 -35.61315 -33.60268 -31.77406 -30.32153 -29.60739 -26.75400 -26.38072 -25.11063 -23.77350 -22.52894 -20.33683 -18.98136 -18.38248 -18.00656 -17.40143 -16.66410 -16.50074 -16.13846 -15.74487 -15.57212 -15.21617 -15.07097 -14.89082 -14.39289 -14.27687 -14.01616 -13.89593 -13.81099 -13.59659 -13.30402 -13.02790 -12.42000 -12.10646 -12.03409 -11.69096 -11.30159 -11.08418 -10.92330 -10.86469 -10.70360 -10.18699 -8.81569 -8.75550 -4.96324 0.04598 0.28496 0.70276 1.32564 1.64223 1.64663 1.94209 1.98878 2.65281 3.33590 3.41079 3.50051 3.53851 3.64949 3.75851 3.78473 3.90129 4.03951 4.23532 4.24816 4.26917 4.28476 4.33543 4.43602 4.50219 4.65009 4.67197 4.74775 4.79074 4.82950 4.90513 5.01025 5.04403 5.15284 5.23869 5.45617 5.95528 6.39254 6.95243 6.99483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 S -0.334 6.334 3 C -0.058 4.058 4 C -0.095 4.095 5 H 0.080 0.920 6 C -0.121 4.121 7 C 0.126 3.874 8 H 0.115 0.885 9 N -0.703 5.703 10 C 0.394 3.606 11 N -0.572 5.572 12 C 0.124 3.876 13 C -0.202 4.202 14 C -0.058 4.058 15 O -0.565 6.565 16 Si 0.768 3.232 17 C -0.009 4.009 18 C -0.234 4.234 19 C -0.144 4.144 20 H 0.087 0.913 21 H 0.085 0.915 22 H 0.102 0.898 23 H 0.097 0.903 24 H 0.091 0.909 25 H 0.121 0.879 26 H 0.077 0.923 27 H 0.404 0.596 28 H 0.139 0.861 29 H 0.098 0.902 30 H 0.403 0.597 31 H -0.301 1.301 32 H -0.291 1.291 33 H 0.161 0.839 34 H 0.162 0.838 35 H 0.052 0.948 36 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.177 5.545 3.573 6.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 S -0.108 6.108 3 C -0.206 4.206 4 C -0.114 4.114 5 H 0.099 0.901 6 C -0.161 4.161 7 C 0.020 3.980 8 H 0.132 0.868 9 N -0.334 5.334 10 C 0.158 3.842 11 N -0.290 5.290 12 C -0.032 4.032 13 C -0.207 4.207 14 C -0.169 4.169 15 O -0.375 6.375 16 Si 0.675 3.325 17 C -0.034 4.034 18 C -0.258 4.258 19 C -0.183 4.183 20 H 0.106 0.894 21 H 0.104 0.896 22 H 0.121 0.879 23 H 0.116 0.884 24 H 0.109 0.891 25 H 0.140 0.860 26 H 0.096 0.904 27 H 0.239 0.761 28 H 0.156 0.844 29 H 0.116 0.884 30 H 0.255 0.745 31 H -0.229 1.229 32 H -0.218 1.218 33 H 0.178 0.822 34 H 0.179 0.821 35 H 0.071 0.929 36 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -1.141 3.894 1.880 4.472 hybrid contribution -1.271 0.791 0.034 1.497 sum -2.412 4.686 1.914 5.607 Atomic orbital electron populations 1.23394 0.91446 1.07143 1.05822 1.87347 1.10571 1.14692 1.98207 1.23422 0.99167 0.92042 1.05987 1.22296 0.92489 0.98166 0.98492 0.90119 1.23379 0.97187 0.95643 0.99888 1.22009 0.82007 0.96938 0.97073 0.86766 1.44297 1.02542 1.64727 1.21847 1.18658 0.86125 0.89932 0.89488 1.67037 0.98623 1.25057 1.38243 1.22131 0.94072 0.94410 0.92602 1.20371 0.97203 1.06402 0.96725 1.24484 0.99046 0.99623 0.93742 1.86444 1.43290 1.70440 1.37334 0.94529 0.84118 0.75984 0.77831 1.21524 0.90268 0.92584 0.99043 1.21805 1.00804 1.07543 0.95644 1.23595 0.98714 0.99074 0.96950 0.89421 0.89608 0.87883 0.88426 0.89061 0.86042 0.90429 0.76057 0.84401 0.88407 0.74542 1.22931 1.21844 0.82177 0.82086 0.92861 0.87229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.24 10.76 113.37 1.22 1.46 16 2 S -0.33 -1.11 22.37 -56.49 -1.26 -2.37 16 3 C -0.06 0.17 5.78 71.98 0.42 0.59 16 4 C -0.09 0.25 3.53 -10.27 -0.04 0.22 16 5 H 0.08 0.10 8.13 -2.39 -0.02 0.08 16 6 C -0.12 0.74 7.39 31.12 0.23 0.97 16 7 C 0.13 -0.41 4.11 45.52 0.19 -0.23 16 8 H 0.11 -0.69 6.11 -2.39 -0.01 -0.70 16 9 N -0.70 -1.91 5.44 -322.04 -1.75 -3.66 16 10 C 0.39 3.02 7.65 133.07 1.02 4.04 16 11 N -0.57 -7.22 10.39 -193.26 -2.01 -9.23 16 12 C 0.12 1.36 9.84 84.62 0.83 2.20 16 13 C -0.20 -1.33 5.39 -19.76 -0.11 -1.44 16 14 C -0.06 0.00 2.81 71.24 0.20 0.20 16 15 O -0.57 0.01 12.82 -148.98 -1.91 -1.90 16 16 Si 0.77 -0.30 29.88 68.60 2.05 1.75 16 17 C -0.01 -0.03 9.83 22.44 0.22 0.19 16 18 C -0.23 -0.85 9.28 22.50 0.21 -0.64 16 19 C -0.14 0.34 7.43 31.12 0.23 0.57 16 20 H 0.09 -0.38 8.14 -2.39 -0.02 -0.40 16 21 H 0.08 -0.34 8.14 -2.39 -0.02 -0.36 16 22 H 0.10 -0.26 8.14 -2.39 -0.02 -0.28 16 23 H 0.10 -0.54 7.85 -2.39 -0.02 -0.56 16 24 H 0.09 -0.39 8.14 -2.39 -0.02 -0.41 16 25 H 0.12 -1.21 8.10 -2.39 -0.02 -1.23 16 26 H 0.08 -0.39 8.14 -2.39 -0.02 -0.41 16 27 H 0.40 1.30 8.82 -92.71 -0.82 0.49 16 28 H 0.14 1.44 4.87 -2.91 -0.01 1.42 16 29 H 0.10 -0.48 7.96 -2.39 -0.02 -0.50 16 30 H 0.40 -4.34 8.74 -74.06 -0.65 -4.99 16 31 H -0.30 -2.42 7.05 99.48 0.70 -1.71 16 32 H -0.29 -1.61 7.11 99.48 0.71 -0.91 16 33 H 0.16 -0.21 8.06 -2.91 -0.02 -0.24 16 34 H 0.16 -0.37 6.04 -2.91 -0.02 -0.39 16 35 H 0.05 0.16 8.14 -2.39 -0.02 0.14 16 36 H 0.11 -0.59 7.90 -2.38 -0.02 -0.61 16 Total: 0.00 -18.25 310.29 -0.60 -18.85 By element: Atomic # 1 Polarization: -11.23 SS G_CDS: -0.34 Total: -11.57 kcal Atomic # 6 Polarization: 3.51 SS G_CDS: 4.62 Total: 8.13 kcal Atomic # 7 Polarization: -9.13 SS G_CDS: -3.76 Total: -12.89 kcal Atomic # 8 Polarization: 0.01 SS G_CDS: -1.91 Total: -1.90 kcal Atomic # 14 Polarization: -0.30 SS G_CDS: 2.05 Total: 1.75 kcal Atomic # 16 Polarization: -1.11 SS G_CDS: -1.26 Total: -2.37 kcal Total: -18.25 -0.60 -18.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16535150_13915762.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.832 kcal (2) G-P(sol) polarization free energy of solvation -18.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds