Wall clock time and date at job start Mon Mar 8 2021 07:15:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42904 * 113.99935 * 2 1 4 4 C 1.52999 * 109.47219 * 179.97438 * 3 2 1 5 5 H 1.08993 * 112.90825 * 316.25002 * 4 3 2 6 6 C 1.53962 * 113.66529 * 87.55249 * 4 3 2 7 7 C 1.53782 * 87.11063 * 139.88900 * 6 4 3 8 8 H 1.09004 * 113.68975 * 220.07786 * 7 6 4 9 9 N 1.46501 * 113.61142 * 89.18830 * 7 6 4 10 10 C 1.38398 * 119.99960 * 107.50436 * 9 7 6 11 11 N 1.32502 * 119.21972 * 359.72748 * 10 9 7 12 12 C 1.32276 * 120.73824 * 179.72058 * 11 10 9 13 13 C 1.38601 * 119.20183 * 0.54537 * 12 11 10 14 14 C 1.50699 * 120.72532 * 179.71028 * 13 12 11 15 15 O 1.42892 * 109.47218 * 120.01687 * 14 13 12 16 16 Si 1.86302 * 109.46737 * 0.02562 * 14 13 12 17 17 C 1.38607 * 118.55550 * 359.72526 * 13 12 11 18 18 N 1.32277 * 119.20002 * 0.02562 * 17 13 12 19 19 C 1.53781 * 87.08260 * 334.63747 * 7 6 4 20 20 H 1.09007 * 109.47542 * 300.00106 * 1 2 3 21 21 H 1.09005 * 109.47713 * 59.99858 * 1 2 3 22 22 H 1.08999 * 109.47092 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47483 * 59.99664 * 3 2 1 24 24 H 1.09004 * 109.46995 * 299.99840 * 3 2 1 25 25 H 1.08997 * 113.53543 * 25.33574 * 6 4 3 26 26 H 1.08998 * 113.73879 * 254.47172 * 6 4 3 27 27 H 0.97001 * 119.99973 * 287.49325 * 9 7 6 28 28 H 1.07998 * 120.39543 * 180.29412 * 12 11 10 29 29 H 1.09000 * 109.46946 * 240.02328 * 14 13 12 30 30 H 0.96701 * 114.00362 * 300.00144 * 15 14 13 31 31 H 1.48498 * 109.99885 * 180.02562 * 16 14 13 32 32 H 1.48497 * 110.00038 * 301.32109 * 16 14 13 33 33 H 1.08001 * 120.40193 * 180.02562 * 17 13 12 34 34 H 1.09002 * 113.61445 * 139.98212 * 19 7 6 35 35 H 1.09002 * 113.61408 * 270.79943 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.9008 0.4284 0.6952 6 6 4.1473 1.0757 -1.4079 7 6 5.2684 2.0019 -0.9079 8 1 5.5799 2.7471 -1.6399 9 7 6.3975 1.2860 -0.3089 10 6 7.6017 1.2027 -0.9860 11 7 7.7145 1.7713 -2.1775 12 6 8.8530 1.7147 -2.8485 13 6 9.9310 1.0412 -2.2959 14 6 11.2420 0.9500 -3.0333 15 8 12.2731 1.5516 -2.2480 16 14 11.1015 1.8427 -4.6624 17 6 9.7768 0.4532 -1.0502 18 7 8.6126 0.5512 -0.4300 19 6 4.2602 2.5355 0.1235 20 1 -0.3634 0.5139 0.8900 21 1 -0.3635 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.6885 1.8465 0.8899 24 1 1.6885 1.8464 -0.8900 25 1 3.5282 1.5205 -2.1870 26 1 4.4900 0.0724 -1.6610 27 1 6.3012 0.8706 0.5624 28 1 8.9402 2.1842 -3.8172 29 1 11.4859 -0.0972 -3.2126 30 1 12.1219 2.4858 -2.0495 31 1 12.3878 1.7595 -5.3998 32 1 10.0110 1.2470 -5.4756 33 1 10.5973 -0.0786 -0.5915 34 1 4.6940 2.7103 1.1081 35 1 3.6731 3.3804 -0.2365 There are 46 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 46 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_16535614_12175864.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:15:14 Heat of formation + Delta-G solvation = 13.023768 kcal Electronic energy + Delta-G solvation = -18119.444464 eV Core-core repulsion = 15120.728724 eV Total energy + Delta-G solvation = -2998.715740 eV No. of doubly occupied orbitals = 46 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.10182 -40.60920 -38.47570 -37.95522 -35.42663 -34.65763 -32.15007 -29.64974 -27.14004 -26.80638 -26.31759 -25.81776 -23.61905 -23.07491 -20.49039 -19.51826 -18.48768 -18.00726 -17.42227 -16.93459 -16.60122 -16.53403 -16.30494 -15.97361 -15.72806 -15.49345 -14.93236 -14.61278 -14.30531 -14.03817 -13.83290 -13.53265 -13.15646 -12.98687 -12.42841 -12.19141 -11.93688 -11.84780 -11.78453 -11.70587 -11.32137 -11.15701 -10.60750 -10.55364 -9.98815 -9.08180 -5.10784 0.08485 0.18743 1.23170 1.56071 1.78295 1.92652 2.72794 2.84544 3.13875 3.40291 3.43814 3.55128 3.62200 3.71663 3.74647 3.81735 3.94710 4.22932 4.27874 4.32002 4.38710 4.49718 4.51750 4.54207 4.63399 4.66992 4.71846 4.76040 4.80022 5.03076 5.04112 5.14983 5.36345 5.82636 6.04038 6.19053 6.42747 6.51909 7.31812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.391 6.391 3 C 0.070 3.930 4 C -0.111 4.111 5 H 0.098 0.902 6 C -0.144 4.144 7 C 0.136 3.864 8 H 0.111 0.889 9 N -0.677 5.677 10 C 0.570 3.430 11 N -0.560 5.560 12 C 0.199 3.801 13 C -0.295 4.295 14 C -0.046 4.046 15 O -0.541 6.541 16 Si 0.682 3.318 17 C 0.223 3.777 18 N -0.569 5.569 19 C -0.139 4.139 20 H 0.041 0.959 21 H 0.041 0.959 22 H 0.086 0.914 23 H 0.051 0.949 24 H 0.052 0.948 25 H 0.092 0.908 26 H 0.072 0.928 27 H 0.415 0.585 28 H 0.166 0.834 29 H 0.116 0.884 30 H 0.379 0.621 31 H -0.251 1.251 32 H -0.255 1.255 33 H 0.171 0.829 34 H 0.078 0.922 35 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.957 3.884 -0.227 4.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.310 6.310 3 C -0.007 4.007 4 C -0.129 4.129 5 H 0.116 0.884 6 C -0.183 4.183 7 C 0.030 3.970 8 H 0.129 0.871 9 N -0.312 5.312 10 C 0.214 3.786 11 N -0.282 5.282 12 C 0.031 3.969 13 C -0.303 4.303 14 C -0.158 4.158 15 O -0.346 6.346 16 Si 0.584 3.416 17 C 0.055 3.945 18 N -0.291 5.291 19 C -0.177 4.177 20 H 0.060 0.940 21 H 0.060 0.940 22 H 0.105 0.895 23 H 0.069 0.931 24 H 0.070 0.930 25 H 0.111 0.889 26 H 0.091 0.909 27 H 0.253 0.747 28 H 0.183 0.817 29 H 0.133 0.867 30 H 0.226 0.774 31 H -0.175 1.175 32 H -0.180 1.180 33 H 0.188 0.812 34 H 0.097 0.903 35 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -2.618 3.212 -0.721 4.206 hybrid contribution 0.366 -0.631 0.264 0.776 sum -2.252 2.581 -0.457 3.456 Atomic orbital electron populations 1.22760 0.80851 1.02968 1.00025 1.87897 1.19808 1.27890 1.95407 1.22560 0.92991 0.84880 1.00263 1.22643 0.93162 0.98318 0.98787 0.88391 1.23554 0.97186 1.01077 0.96514 1.21810 0.84452 0.94641 0.96130 0.87107 1.43821 1.07386 1.58503 1.21535 1.19347 0.86637 0.86693 0.85952 1.67912 1.26819 1.25241 1.08264 1.22791 0.86551 0.90243 0.97331 1.21713 0.99335 1.08746 1.00530 1.24699 0.85111 1.02783 1.03238 1.86505 1.44603 1.29317 1.74156 0.94964 0.81091 0.89811 0.75750 1.22833 0.92684 0.89537 0.89424 1.67987 1.01020 1.22453 1.37609 1.23371 0.96986 0.97161 1.00214 0.94011 0.94009 0.89520 0.93126 0.92980 0.88923 0.90915 0.74702 0.81706 0.86711 0.77354 1.17545 1.18010 0.81232 0.90336 0.88192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.01 11.01 101.05 1.11 1.10 16 2 O -0.39 -0.85 10.70 -35.23 -0.38 -1.23 16 3 C 0.07 -0.02 5.78 37.16 0.21 0.20 16 4 C -0.11 0.08 3.90 -89.71 -0.35 -0.27 16 5 H 0.10 0.00 8.14 -51.93 -0.42 -0.42 16 6 C -0.14 0.03 7.44 -25.82 -0.19 -0.16 16 7 C 0.14 -0.07 4.33 -67.12 -0.29 -0.36 16 8 H 0.11 0.01 7.37 -51.93 -0.38 -0.37 16 9 N -0.68 -0.55 5.41 -55.00 -0.30 -0.85 16 10 C 0.57 1.57 8.43 -322.80 -2.72 -1.15 16 11 N -0.56 -1.31 9.13 -13.93 -0.13 -1.44 16 12 C 0.20 0.07 9.92 -17.23 -0.17 -0.10 16 13 C -0.29 0.00 5.40 -104.35 -0.56 -0.57 16 14 C -0.05 0.05 2.85 36.01 0.10 0.15 16 15 O -0.54 0.40 12.79 -35.23 -0.45 -0.05 16 16 Si 0.68 -1.30 29.87 -169.99 -5.08 -6.38 16 17 C 0.22 0.28 10.92 -17.22 -0.19 0.09 16 18 N -0.57 -1.73 10.46 -13.93 -0.15 -1.87 16 19 C -0.14 0.29 7.38 -25.92 -0.19 0.10 16 20 H 0.04 -0.05 8.14 -51.93 -0.42 -0.47 16 21 H 0.04 -0.05 8.14 -51.93 -0.42 -0.47 16 22 H 0.09 -0.09 8.14 -51.93 -0.42 -0.51 16 23 H 0.05 -0.05 8.14 -51.93 -0.42 -0.47 16 24 H 0.05 -0.06 7.85 -51.93 -0.41 -0.46 16 25 H 0.09 -0.08 7.90 -51.93 -0.41 -0.49 16 26 H 0.07 0.11 8.14 -51.93 -0.42 -0.31 16 27 H 0.42 -0.02 8.82 -40.82 -0.36 -0.38 16 28 H 0.17 -0.36 5.04 -52.49 -0.26 -0.62 16 29 H 0.12 -0.10 7.96 -51.93 -0.41 -0.51 16 30 H 0.38 -1.65 8.70 45.56 0.40 -1.26 16 31 H -0.25 -0.36 7.11 56.52 0.40 0.04 16 32 H -0.26 -0.10 7.11 56.52 0.40 0.30 16 33 H 0.17 -0.08 8.06 -52.49 -0.42 -0.50 16 34 H 0.08 -0.17 8.14 -51.93 -0.42 -0.60 16 35 H 0.10 -0.31 8.10 -51.93 -0.42 -0.74 16 LS Contribution 296.72 15.07 4.47 4.47 Total: 0.00 -6.48 296.72 -10.08 -16.56 By element: Atomic # 1 Polarization: -3.41 SS G_CDS: -4.84 Total: -8.25 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: -3.24 Total: -0.95 kcal Atomic # 7 Polarization: -3.59 SS G_CDS: -0.57 Total: -4.16 kcal Atomic # 8 Polarization: -0.46 SS G_CDS: -0.83 Total: -1.29 kcal Atomic # 14 Polarization: -1.30 SS G_CDS: -5.08 Total: -6.38 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -6.48 -10.08 -16.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16535614_12175864.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.585 kcal (2) G-P(sol) polarization free energy of solvation -6.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds