Wall clock time and date at job start Mon Mar 8 2021 07:15:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42904 * 113.99935 * 2 1 4 4 C 1.52999 * 109.47219 * 179.97438 * 3 2 1 5 5 H 1.08993 * 112.90825 * 316.25002 * 4 3 2 6 6 C 1.53962 * 113.66529 * 87.55249 * 4 3 2 7 7 C 1.53782 * 87.11063 * 139.88900 * 6 4 3 8 8 H 1.09004 * 113.68975 * 220.07786 * 7 6 4 9 9 N 1.46501 * 113.61142 * 89.18830 * 7 6 4 10 10 C 1.38398 * 119.99960 * 107.50436 * 9 7 6 11 11 N 1.32502 * 119.21972 * 359.72748 * 10 9 7 12 12 C 1.32276 * 120.73824 * 179.72058 * 11 10 9 13 13 C 1.38601 * 119.20183 * 0.54537 * 12 11 10 14 14 C 1.50699 * 120.72532 * 179.71028 * 13 12 11 15 15 O 1.42892 * 109.47218 * 120.01687 * 14 13 12 16 16 Si 1.86302 * 109.46737 * 0.02562 * 14 13 12 17 17 C 1.38607 * 118.55550 * 359.72526 * 13 12 11 18 18 N 1.32277 * 119.20002 * 0.02562 * 17 13 12 19 19 C 1.53781 * 87.08260 * 334.63747 * 7 6 4 20 20 H 1.09007 * 109.47542 * 300.00106 * 1 2 3 21 21 H 1.09005 * 109.47713 * 59.99858 * 1 2 3 22 22 H 1.08999 * 109.47092 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47483 * 59.99664 * 3 2 1 24 24 H 1.09004 * 109.46995 * 299.99840 * 3 2 1 25 25 H 1.08997 * 113.53543 * 25.33574 * 6 4 3 26 26 H 1.08998 * 113.73879 * 254.47172 * 6 4 3 27 27 H 0.97001 * 119.99973 * 287.49325 * 9 7 6 28 28 H 1.07998 * 120.39543 * 180.29412 * 12 11 10 29 29 H 1.09000 * 109.46946 * 240.02328 * 14 13 12 30 30 H 0.96701 * 114.00362 * 300.00144 * 15 14 13 31 31 H 1.48498 * 109.99885 * 180.02562 * 16 14 13 32 32 H 1.48497 * 110.00038 * 301.32109 * 16 14 13 33 33 H 1.08001 * 120.40193 * 180.02562 * 17 13 12 34 34 H 1.09002 * 113.61445 * 139.98212 * 19 7 6 35 35 H 1.09002 * 113.61408 * 270.79943 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.9008 0.4284 0.6952 6 6 4.1473 1.0757 -1.4079 7 6 5.2684 2.0019 -0.9079 8 1 5.5799 2.7471 -1.6399 9 7 6.3975 1.2860 -0.3089 10 6 7.6017 1.2027 -0.9860 11 7 7.7145 1.7713 -2.1775 12 6 8.8530 1.7147 -2.8485 13 6 9.9310 1.0412 -2.2959 14 6 11.2420 0.9500 -3.0333 15 8 12.2731 1.5516 -2.2480 16 14 11.1015 1.8427 -4.6624 17 6 9.7768 0.4532 -1.0502 18 7 8.6126 0.5512 -0.4300 19 6 4.2602 2.5355 0.1235 20 1 -0.3634 0.5139 0.8900 21 1 -0.3635 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.6885 1.8465 0.8899 24 1 1.6885 1.8464 -0.8900 25 1 3.5282 1.5205 -2.1870 26 1 4.4900 0.0724 -1.6610 27 1 6.3012 0.8706 0.5624 28 1 8.9402 2.1842 -3.8172 29 1 11.4859 -0.0972 -3.2126 30 1 12.1219 2.4858 -2.0495 31 1 12.3878 1.7595 -5.3998 32 1 10.0110 1.2470 -5.4756 33 1 10.5973 -0.0786 -0.5915 34 1 4.6940 2.7103 1.1081 35 1 3.6731 3.3804 -0.2365 There are 46 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 46 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_16535614_12175864.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:15:13 Heat of formation + Delta-G solvation = 15.192191 kcal Electronic energy + Delta-G solvation = -18119.350434 eV Core-core repulsion = 15120.728724 eV Total energy + Delta-G solvation = -2998.621710 eV No. of doubly occupied orbitals = 46 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.15849 -40.57476 -38.48842 -37.90910 -35.43588 -34.74496 -32.16594 -29.61153 -27.11498 -26.75619 -26.28251 -25.86832 -23.61070 -23.08553 -20.45559 -19.55291 -18.50087 -17.98478 -17.41551 -16.91729 -16.60112 -16.51410 -16.29339 -15.97426 -15.74139 -15.49365 -14.91964 -14.62527 -14.28518 -14.05867 -13.75162 -13.44982 -13.14429 -12.91850 -12.39825 -12.22853 -11.93287 -11.87376 -11.81257 -11.70566 -11.27430 -11.14737 -10.59859 -10.52402 -10.05264 -9.11717 -4.98555 0.02946 0.12011 1.32909 1.64647 1.76880 1.99545 2.75219 2.80419 3.12931 3.49474 3.53297 3.62541 3.62991 3.69480 3.77459 3.86141 3.99442 4.24916 4.33714 4.39503 4.46619 4.55385 4.58959 4.61992 4.68536 4.76813 4.77908 4.82611 4.84321 5.02531 5.10211 5.17265 5.38196 5.78519 6.02595 6.23043 6.37467 6.79287 7.24390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.420 6.420 3 C 0.066 3.934 4 C -0.109 4.109 5 H 0.086 0.914 6 C -0.143 4.143 7 C 0.135 3.865 8 H 0.107 0.893 9 N -0.676 5.676 10 C 0.554 3.446 11 N -0.574 5.574 12 C 0.194 3.806 13 C -0.287 4.287 14 C -0.048 4.048 15 O -0.554 6.554 16 Si 0.771 3.229 17 C 0.212 3.788 18 N -0.592 5.592 19 C -0.123 4.123 20 H 0.050 0.950 21 H 0.049 0.951 22 H 0.089 0.911 23 H 0.060 0.940 24 H 0.062 0.938 25 H 0.101 0.899 26 H 0.050 0.950 27 H 0.417 0.583 28 H 0.189 0.811 29 H 0.113 0.887 30 H 0.395 0.605 31 H -0.296 1.296 32 H -0.283 1.283 33 H 0.182 0.818 34 H 0.083 0.917 35 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.152 4.849 -0.305 5.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.340 6.340 3 C -0.010 4.010 4 C -0.128 4.128 5 H 0.105 0.895 6 C -0.182 4.182 7 C 0.029 3.971 8 H 0.125 0.875 9 N -0.311 5.311 10 C 0.197 3.803 11 N -0.297 5.297 12 C 0.027 3.973 13 C -0.295 4.295 14 C -0.159 4.159 15 O -0.362 6.362 16 Si 0.677 3.323 17 C 0.045 3.955 18 N -0.314 5.314 19 C -0.161 4.161 20 H 0.068 0.932 21 H 0.068 0.932 22 H 0.107 0.893 23 H 0.078 0.922 24 H 0.080 0.920 25 H 0.119 0.881 26 H 0.068 0.932 27 H 0.255 0.745 28 H 0.205 0.795 29 H 0.130 0.870 30 H 0.245 0.755 31 H -0.223 1.223 32 H -0.210 1.210 33 H 0.199 0.801 34 H 0.101 0.899 35 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -2.822 4.193 -0.769 5.112 hybrid contribution 0.467 -0.965 0.257 1.103 sum -2.355 3.227 -0.512 4.028 Atomic orbital electron populations 1.22880 0.79863 1.03483 1.00830 1.87858 1.21112 1.29393 1.95601 1.22685 0.92940 0.84221 1.01141 1.22599 0.93185 0.98931 0.98048 0.89523 1.23549 0.97592 0.99934 0.97161 1.21856 0.84169 0.94385 0.96693 0.87499 1.43916 1.07247 1.58441 1.21520 1.19604 0.87155 0.87114 0.86414 1.67955 1.27685 1.25725 1.08326 1.23211 0.86128 0.90037 0.97972 1.21783 0.99684 1.07995 1.00032 1.24818 0.84448 1.03045 1.03633 1.86474 1.44652 1.30848 1.74206 0.93920 0.77109 0.88273 0.73026 1.23132 0.92593 0.89772 0.90045 1.67995 1.01725 1.23259 1.38428 1.23319 0.95979 0.96821 0.99991 0.93176 0.93191 0.89273 0.92230 0.91999 0.88104 0.93159 0.74531 0.79464 0.86995 0.75506 1.22342 1.20980 0.80121 0.89865 0.86478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.02 11.01 113.37 1.25 1.23 16 2 O -0.42 -2.00 10.70 -148.98 -1.59 -3.60 16 3 C 0.07 -0.04 5.78 71.98 0.42 0.37 16 4 C -0.11 0.13 3.90 -10.20 -0.04 0.09 16 5 H 0.09 0.09 8.14 -2.39 -0.02 0.07 16 6 C -0.14 -0.03 7.44 31.18 0.23 0.20 16 7 C 0.13 -0.09 4.33 45.52 0.20 0.11 16 8 H 0.11 0.04 7.37 -2.38 -0.02 0.02 16 9 N -0.68 -1.71 5.41 -327.92 -1.77 -3.49 16 10 C 0.55 3.52 8.43 261.49 2.20 5.72 16 11 N -0.57 -2.91 9.13 -197.99 -1.81 -4.72 16 12 C 0.19 0.11 9.92 84.71 0.84 0.95 16 13 C -0.29 0.01 5.40 -19.69 -0.11 -0.09 16 14 C -0.05 0.13 2.85 71.24 0.20 0.33 16 15 O -0.55 1.15 12.79 -148.98 -1.90 -0.76 16 16 Si 0.77 -3.25 29.87 68.60 2.05 -1.20 16 17 C 0.21 0.63 10.92 84.71 0.93 1.55 16 18 N -0.59 -4.13 10.46 -197.98 -2.07 -6.20 16 19 C -0.12 0.58 7.38 31.12 0.23 0.81 16 20 H 0.05 -0.13 8.14 -2.38 -0.02 -0.15 16 21 H 0.05 -0.13 8.14 -2.38 -0.02 -0.15 16 22 H 0.09 -0.15 8.14 -2.39 -0.02 -0.17 16 23 H 0.06 -0.16 8.14 -2.39 -0.02 -0.18 16 24 H 0.06 -0.18 7.85 -2.38 -0.02 -0.20 16 25 H 0.10 -0.17 7.90 -2.39 -0.02 -0.19 16 26 H 0.05 0.24 8.14 -2.39 -0.02 0.22 16 27 H 0.42 0.45 8.82 -92.71 -0.82 -0.37 16 28 H 0.19 -0.98 5.04 -2.91 -0.01 -0.99 16 29 H 0.11 -0.22 7.96 -2.39 -0.02 -0.24 16 30 H 0.39 -3.82 8.70 -74.06 -0.64 -4.46 16 31 H -0.30 -1.02 7.11 99.48 0.71 -0.31 16 32 H -0.28 -0.14 7.11 99.48 0.71 0.57 16 33 H 0.18 -0.09 8.06 -2.91 -0.02 -0.11 16 34 H 0.08 -0.43 8.14 -2.39 -0.02 -0.45 16 35 H 0.12 -0.92 8.10 -2.39 -0.02 -0.94 16 Total: 0.00 -15.64 296.72 -1.07 -16.71 By element: Atomic # 1 Polarization: -7.69 SS G_CDS: -0.32 Total: -8.01 kcal Atomic # 6 Polarization: 4.93 SS G_CDS: 6.35 Total: 11.27 kcal Atomic # 7 Polarization: -8.76 SS G_CDS: -5.65 Total: -14.42 kcal Atomic # 8 Polarization: -0.86 SS G_CDS: -3.50 Total: -4.35 kcal Atomic # 14 Polarization: -3.25 SS G_CDS: 2.05 Total: -1.20 kcal Total: -15.64 -1.07 -16.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16535614_12175864.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.899 kcal (2) G-P(sol) polarization free energy of solvation -15.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds