Wall clock time and date at job start Mon Mar 8 2021 07:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42901 * 113.99578 * 2 1 4 4 C 1.52999 * 109.47053 * 180.02562 * 3 2 1 5 5 H 1.08994 * 112.85014 * 43.80812 * 4 3 2 6 6 C 1.53780 * 113.61351 * 175.00521 * 4 3 2 7 7 C 1.53778 * 87.08374 * 140.06769 * 6 4 3 8 8 H 1.08993 * 113.61642 * 219.93822 * 7 6 4 9 9 N 1.46500 * 113.61570 * 89.11174 * 7 6 4 10 10 C 1.39008 * 119.99906 * 155.00331 * 9 7 6 11 11 N 1.32395 * 119.70234 * 180.02562 * 10 9 7 12 12 C 1.31979 * 121.61533 * 179.97438 * 11 10 9 13 13 C 1.38013 * 120.85998 * 0.02562 * 12 11 10 14 14 C 1.50699 * 120.33417 * 179.97438 * 13 12 11 15 15 O 1.42903 * 109.47152 * 120.00387 * 14 13 12 16 16 Si 1.86293 * 109.47431 * 0.02562 * 14 13 12 17 17 C 1.38881 * 119.33027 * 0.25176 * 13 12 11 18 18 C 1.38303 * 118.50553 * 359.50302 * 17 13 12 19 19 C 1.53779 * 87.07878 * 334.56616 * 7 6 4 20 20 H 1.09001 * 109.46915 * 180.02562 * 1 2 3 21 21 H 1.08996 * 109.46739 * 299.98973 * 1 2 3 22 22 H 1.08993 * 109.47457 * 59.99305 * 1 2 3 23 23 H 1.09000 * 109.46847 * 60.00677 * 3 2 1 24 24 H 1.08997 * 109.47802 * 300.00903 * 3 2 1 25 25 H 1.08999 * 113.61597 * 25.51658 * 6 4 3 26 26 H 1.09004 * 113.61524 * 254.61200 * 6 4 3 27 27 H 0.96993 * 120.00167 * 335.00283 * 9 7 6 28 28 H 1.08000 * 119.56770 * 179.97438 * 12 11 10 29 29 H 1.09008 * 109.47393 * 239.99782 * 14 13 12 30 30 H 0.96700 * 114.00311 * 180.02562 * 15 14 13 31 31 H 1.48506 * 109.99973 * 59.99460 * 16 14 13 32 32 H 1.48493 * 110.00375 * 181.31561 * 16 14 13 33 33 H 1.08003 * 120.74707 * 179.74534 * 17 13 12 34 34 H 1.07998 * 120.44842 * 180.21814 * 18 17 13 35 35 H 1.09005 * 113.61835 * 139.98241 * 19 7 6 36 36 H 1.09001 * 113.61721 * 270.88445 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 1 3.8999 0.4289 -0.6962 6 6 4.2602 2.5355 -0.1234 7 6 5.2691 1.9986 0.9055 8 1 5.5831 2.7420 1.6381 9 7 6.3959 1.2816 0.3035 10 6 7.6063 1.1945 0.9815 11 7 8.6210 0.5456 0.4317 12 6 9.7867 0.4401 1.0415 13 6 9.9897 1.0067 2.2835 14 6 11.3255 0.8785 2.9693 15 8 11.8692 2.1797 3.2003 16 14 12.4877 -0.0966 1.8882 17 6 8.9489 1.6912 2.8974 18 6 7.7405 1.7897 2.2319 19 6 4.1471 1.0736 1.4059 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5137 0.8901 22 1 -0.3634 0.5139 -0.8898 23 1 1.6886 1.8463 0.8901 24 1 1.6885 1.8465 -0.8898 25 1 3.6742 3.3800 0.2393 26 1 4.6927 2.7111 -1.1084 27 1 6.2974 0.8677 -0.5681 28 1 10.5919 -0.0973 0.5627 29 1 11.1970 0.3641 3.9218 30 1 12.7307 2.1737 3.6395 31 1 12.6711 0.5947 0.5867 32 1 13.7986 -0.2573 2.5670 33 1 9.0813 2.1399 3.8708 34 1 6.9112 2.3179 2.6786 35 1 4.4882 0.0689 1.6555 36 1 3.5302 1.5184 2.1867 There are 46 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 46 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_16535614_13915762.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:15:17 Heat of formation + Delta-G solvation = -0.232400 kcal Electronic energy + Delta-G solvation = -17952.793647 eV Core-core repulsion = 15018.928988 eV Total energy + Delta-G solvation = -2933.864660 eV No. of doubly occupied orbitals = 46 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.54948 -40.41770 -38.46031 -37.87707 -35.33981 -33.44618 -31.43868 -29.52433 -27.06719 -26.67010 -26.07504 -24.93932 -23.47237 -22.42598 -20.25382 -18.90421 -18.48922 -17.87937 -17.39189 -16.89206 -16.63122 -16.51271 -16.17900 -15.55894 -15.41816 -15.27427 -14.78196 -14.30391 -14.05336 -13.92553 -13.85507 -13.68832 -13.41502 -12.87405 -12.47520 -12.31174 -12.05136 -11.81304 -11.62981 -11.25519 -11.04848 -10.75555 -10.60365 -10.57552 -10.30068 -8.69393 -4.91695 0.21329 0.40110 1.32754 1.59734 1.96040 2.05652 2.76109 2.81529 3.44039 3.47303 3.59316 3.64149 3.81526 3.84453 3.94294 4.01553 4.10389 4.34091 4.34770 4.38398 4.47259 4.49398 4.59505 4.61525 4.69580 4.76685 4.78928 4.83486 4.84997 5.01410 5.07174 5.13421 5.24060 5.34790 5.56930 6.05632 6.24030 6.51974 6.63525 7.13065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.419 6.419 3 C 0.066 3.934 4 C -0.110 4.110 5 H 0.084 0.916 6 C -0.126 4.126 7 C 0.127 3.873 8 H 0.110 0.890 9 N -0.703 5.703 10 C 0.395 3.605 11 N -0.566 5.566 12 C 0.144 3.856 13 C -0.199 4.199 14 C -0.065 4.065 15 O -0.559 6.559 16 Si 0.750 3.250 17 C -0.013 4.013 18 C -0.240 4.240 19 C -0.144 4.144 20 H 0.089 0.911 21 H 0.050 0.950 22 H 0.048 0.952 23 H 0.063 0.937 24 H 0.056 0.944 25 H 0.117 0.883 26 H 0.077 0.923 27 H 0.405 0.595 28 H 0.165 0.835 29 H 0.097 0.903 30 H 0.395 0.605 31 H -0.301 1.301 32 H -0.281 1.281 33 H 0.149 0.851 34 H 0.154 0.846 35 H 0.057 0.943 36 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.078 0.667 2.779 4.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.339 6.339 3 C -0.010 4.010 4 C -0.129 4.129 5 H 0.102 0.898 6 C -0.165 4.165 7 C 0.021 3.979 8 H 0.128 0.872 9 N -0.334 5.334 10 C 0.159 3.841 11 N -0.283 5.283 12 C -0.013 4.013 13 C -0.204 4.204 14 C -0.174 4.174 15 O -0.369 6.369 16 Si 0.656 3.344 17 C -0.039 4.039 18 C -0.265 4.265 19 C -0.183 4.183 20 H 0.108 0.892 21 H 0.069 0.931 22 H 0.067 0.933 23 H 0.081 0.919 24 H 0.074 0.926 25 H 0.135 0.865 26 H 0.096 0.904 27 H 0.241 0.759 28 H 0.182 0.818 29 H 0.115 0.885 30 H 0.245 0.755 31 H -0.229 1.229 32 H -0.208 1.208 33 H 0.166 0.834 34 H 0.172 0.828 35 H 0.076 0.924 36 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -3.039 0.402 1.348 3.349 hybrid contribution 0.474 1.152 0.859 1.513 sum -2.566 1.554 2.207 3.724 Atomic orbital electron populations 1.22879 0.79890 1.03508 1.00782 1.87863 1.21075 1.29342 1.95591 1.22687 0.93059 0.84230 1.01037 1.22543 0.93049 0.98802 0.98488 0.89794 1.23324 0.96203 0.96915 1.00016 1.21957 0.84703 0.94423 0.96843 0.87186 1.44261 1.07937 1.59313 1.21927 1.18632 0.86433 0.89828 0.89217 1.67141 1.01099 1.22630 1.37455 1.22381 0.93355 0.94807 0.90773 1.20138 0.96486 1.06291 0.97464 1.24650 0.97087 0.89758 1.05946 1.86540 1.40222 1.27518 1.82625 0.94332 0.77702 0.86640 0.75769 1.21427 0.90791 0.92204 0.99455 1.21705 1.00719 1.07904 0.96128 1.23567 0.97406 1.00379 0.96961 0.89222 0.93123 0.93337 0.91857 0.92601 0.86488 0.90397 0.75884 0.81822 0.88518 0.75502 1.22933 1.20787 0.83377 0.82846 0.92414 0.87703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 11.01 113.37 1.25 1.22 16 2 O -0.42 -1.77 10.70 -148.98 -1.59 -3.36 16 3 C 0.07 -0.08 5.78 71.98 0.42 0.34 16 4 C -0.11 0.22 3.88 -10.27 -0.04 0.18 16 5 H 0.08 0.09 8.14 -2.39 -0.02 0.07 16 6 C -0.13 0.68 7.39 31.12 0.23 0.91 16 7 C 0.13 -0.40 4.11 45.52 0.19 -0.21 16 8 H 0.11 -0.58 6.10 -2.39 -0.01 -0.59 16 9 N -0.70 -1.17 5.44 -322.06 -1.75 -2.93 16 10 C 0.39 2.32 7.65 133.06 1.02 3.33 16 11 N -0.57 -5.01 10.39 -193.27 -2.01 -7.02 16 12 C 0.14 0.87 9.84 84.62 0.83 1.70 16 13 C -0.20 -0.85 5.43 -19.76 -0.11 -0.96 16 14 C -0.06 -0.01 2.83 71.24 0.20 0.19 16 15 O -0.56 -1.37 12.76 -148.98 -1.90 -3.27 16 16 Si 0.75 -0.48 29.82 68.60 2.05 1.56 16 17 C -0.01 -0.04 9.77 22.44 0.22 0.18 16 18 C -0.24 -0.72 9.29 22.50 0.21 -0.51 16 19 C -0.14 0.34 7.43 31.12 0.23 0.57 16 20 H 0.09 -0.19 8.14 -2.39 -0.02 -0.21 16 21 H 0.05 -0.16 8.14 -2.39 -0.02 -0.18 16 22 H 0.05 -0.13 8.14 -2.39 -0.02 -0.15 16 23 H 0.06 -0.24 7.85 -2.39 -0.02 -0.26 16 24 H 0.06 -0.15 8.14 -2.39 -0.02 -0.17 16 25 H 0.12 -1.02 8.10 -2.39 -0.02 -1.04 16 26 H 0.08 -0.35 8.14 -2.38 -0.02 -0.37 16 27 H 0.41 0.70 8.82 -92.71 -0.82 -0.11 16 28 H 0.17 0.36 4.88 -2.91 -0.01 0.34 16 29 H 0.10 -0.41 7.96 -2.38 -0.02 -0.43 16 30 H 0.39 -2.25 8.74 -74.06 -0.65 -2.89 16 31 H -0.30 -2.22 7.11 99.48 0.71 -1.51 16 32 H -0.28 -0.78 7.11 99.48 0.71 -0.07 16 33 H 0.15 -0.03 8.06 -2.91 -0.02 -0.06 16 34 H 0.15 -0.29 6.04 -2.91 -0.02 -0.31 16 35 H 0.06 0.10 8.14 -2.38 -0.02 0.09 16 36 H 0.10 -0.52 7.90 -2.39 -0.02 -0.54 16 Total: 0.00 -15.57 299.17 -0.90 -16.47 By element: Atomic # 1 Polarization: -8.06 SS G_CDS: -0.33 Total: -8.39 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: 4.65 Total: 6.93 kcal Atomic # 7 Polarization: -6.19 SS G_CDS: -3.76 Total: -9.95 kcal Atomic # 8 Polarization: -3.14 SS G_CDS: -3.50 Total: -6.63 kcal Atomic # 14 Polarization: -0.48 SS G_CDS: 2.05 Total: 1.56 kcal Total: -15.57 -0.90 -16.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16535614_13915762.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.238 kcal (2) G-P(sol) polarization free energy of solvation -15.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds