Wall clock time and date at job start Mon Mar 8 2021 07:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42895 * 1 3 3 Si 1.86295 * 109.47442 * 2 1 4 4 C 1.50704 * 109.47325 * 120.00146 * 2 1 3 5 5 C 1.38014 * 120.33802 * 245.24860 * 4 2 1 6 6 N 1.31971 * 120.86181 * 180.28318 * 5 4 2 7 7 C 1.32399 * 121.61774 * 359.74298 * 6 5 4 8 8 N 1.39008 * 119.70614 * 180.02562 * 7 6 5 9 9 C 1.46495 * 119.99962 * 179.97438 * 8 7 6 10 10 H 1.08998 * 112.84965 * 336.19098 * 9 8 7 11 11 C 1.53780 * 113.61710 * 107.49991 * 9 8 7 12 12 C 1.53783 * 87.08317 * 139.98225 * 11 9 8 13 13 H 1.08993 * 113.61780 * 89.11698 * 12 11 9 14 14 C 1.53005 * 113.61071 * 220.02304 * 12 11 9 15 15 O 1.42904 * 109.46569 * 272.48912 * 14 12 11 16 16 C 1.35896 * 116.99414 * 179.97438 * 15 14 12 17 17 C 1.38731 * 120.06161 * 359.73252 * 16 15 14 18 18 C 1.38141 * 119.94635 * 179.69622 * 17 16 15 19 19 C 1.38268 * 120.05452 * 0.59996 * 18 17 16 20 20 C 1.38257 * 120.11210 * 359.66983 * 19 18 17 21 21 C 1.38147 * 120.05748 * 0.03228 * 20 19 18 22 22 C 1.53778 * 113.61391 * 204.99568 * 9 8 7 23 23 C 1.39137 * 120.59181 * 359.97368 * 7 6 5 24 24 C 1.38307 * 119.09401 * 0.02562 * 23 7 6 25 25 H 0.96705 * 114.00115 * 59.99920 * 1 2 3 26 26 H 1.09008 * 109.46992 * 239.99799 * 2 1 3 27 27 H 1.48497 * 109.99892 * 59.99937 * 3 2 1 28 28 H 1.48503 * 110.00380 * 181.31930 * 3 2 1 29 29 H 1.08008 * 119.57374 * 0.02562 * 5 4 2 30 30 H 0.96999 * 119.99949 * 359.97289 * 8 7 6 31 31 H 1.09006 * 113.60825 * 254.52762 * 11 9 8 32 32 H 1.08995 * 113.61367 * 25.42870 * 11 9 8 33 33 H 1.08992 * 109.47342 * 32.49015 * 14 12 11 34 34 H 1.09001 * 109.46898 * 152.49473 * 14 12 11 35 35 H 1.07997 * 120.02381 * 359.97438 * 17 16 15 36 36 H 1.07998 * 119.97572 * 180.27442 * 18 17 16 37 37 H 1.08006 * 119.94468 * 179.70377 * 19 18 17 38 38 H 1.08000 * 119.97481 * 180.02562 * 20 19 18 39 39 H 1.07997 * 120.02986 * 180.02562 * 21 20 19 40 40 H 1.09000 * 113.61530 * 334.56882 * 22 9 8 41 41 H 1.09007 * 113.61655 * 105.38355 * 22 9 8 42 42 H 1.07998 * 120.45618 * 180.02562 * 23 7 6 43 43 H 1.08002 * 120.74429 * 179.97438 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 2.6339 -0.0192 2.1965 6 7 3.0834 -0.6321 3.2754 7 6 2.8763 -1.9242 3.4766 8 7 3.3673 -2.5295 4.6276 9 6 3.1414 -3.9587 4.8570 10 1 2.2733 -4.3414 4.3205 11 6 4.4046 -4.8180 4.6815 12 6 3.9343 -5.6195 5.9067 13 1 3.2837 -6.4575 5.6569 14 6 5.0688 -6.0089 6.8567 15 8 5.6380 -7.2501 6.4352 16 6 6.6658 -7.7407 7.1766 17 6 7.1210 -7.0392 8.2835 18 6 8.1619 -7.5432 9.0391 19 6 8.7582 -8.7396 8.6858 20 6 8.3101 -9.4379 7.5798 21 6 7.2655 -8.9412 6.8245 22 6 3.1725 -4.3566 6.3421 23 6 2.1708 -2.6815 2.5467 24 6 1.6875 -2.0664 1.4062 25 1 -0.3934 0.4417 -0.7651 26 1 1.7923 -0.5139 -0.8900 27 1 1.5615 2.4678 1.2085 28 1 3.5346 1.7702 -0.0321 29 1 2.8219 1.0364 2.0660 30 1 3.8595 -2.0056 5.2789 31 1 4.4137 -5.3972 3.7581 32 1 5.3320 -4.2700 4.8479 33 1 5.8356 -5.2345 6.8435 34 1 4.6759 -6.1141 7.8679 35 1 6.6590 -6.1021 8.5569 36 1 8.5137 -6.9996 9.9035 37 1 9.5750 -9.1296 9.2750 38 1 8.7772 -10.3723 7.3060 39 1 6.9155 -9.4872 5.9609 40 1 3.7630 -3.6825 6.9625 41 1 2.1868 -4.5619 6.7599 42 1 2.0028 -3.7353 2.7133 43 1 1.1367 -2.6288 0.6667 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_16536078_13915762.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:16:48 Heat of formation + Delta-G solvation = 36.184811 kcal Electronic energy + Delta-G solvation = -24199.684593 eV Core-core repulsion = 20598.956921 eV Total energy + Delta-G solvation = -3600.727672 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 313.146 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.67843 -41.18276 -40.14677 -38.26384 -37.76087 -35.60213 -33.59245 -32.09692 -31.65330 -30.92270 -29.03446 -26.80095 -26.43720 -25.05673 -24.23831 -23.42091 -22.82714 -21.98242 -20.75943 -19.24193 -18.82777 -18.45595 -18.13584 -17.30885 -16.96684 -16.82916 -16.62858 -16.30841 -16.07542 -15.54603 -15.49400 -15.31759 -15.05914 -14.46984 -14.35947 -14.26301 -14.15647 -13.94535 -13.87545 -13.52907 -13.39261 -12.97781 -12.57930 -12.46188 -12.28285 -12.18424 -12.07954 -11.86212 -11.69165 -11.32873 -11.12043 -10.88256 -10.72571 -10.19180 -10.00407 -9.21557 -8.80523 -4.96767 0.04041 0.27908 0.34153 0.44460 1.31840 1.63725 1.93273 1.97697 2.21142 2.64728 2.79989 3.32775 3.38779 3.45576 3.49696 3.67027 3.72917 3.78421 3.85850 3.88640 3.93062 4.03282 4.17833 4.19816 4.24550 4.27525 4.31875 4.42784 4.46080 4.50666 4.62617 4.64002 4.66569 4.69484 4.75687 4.89108 4.97649 4.98369 5.03785 5.15293 5.25326 5.30563 5.43447 5.44532 5.56844 5.81625 5.93404 6.40846 6.42060 6.94352 6.99254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.565 6.565 2 C -0.059 4.059 3 Si 0.768 3.232 4 C -0.203 4.203 5 C 0.125 3.875 6 N -0.570 5.570 7 C 0.393 3.607 8 N -0.708 5.708 9 C 0.129 3.871 10 H 0.122 0.878 11 C -0.148 4.148 12 C -0.100 4.100 13 H 0.110 0.890 14 C 0.067 3.933 15 O -0.328 6.328 16 C 0.111 3.889 17 C -0.220 4.220 18 C -0.089 4.089 19 C -0.169 4.169 20 C -0.087 4.087 21 C -0.172 4.172 22 C -0.125 4.125 23 C -0.237 4.237 24 C -0.009 4.009 25 H 0.403 0.597 26 H 0.097 0.903 27 H -0.299 1.299 28 H -0.292 1.292 29 H 0.140 0.860 30 H 0.406 0.594 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.139 0.861 36 H 0.143 0.857 37 H 0.141 0.859 38 H 0.148 0.852 39 H 0.133 0.867 40 H 0.096 0.904 41 H 0.093 0.907 42 H 0.159 0.841 43 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.317 -1.398 -2.047 2.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.375 6.375 2 C -0.170 4.170 3 Si 0.676 3.324 4 C -0.208 4.208 5 C -0.031 4.031 6 N -0.288 5.288 7 C 0.156 3.844 8 N -0.338 5.338 9 C 0.024 3.976 10 H 0.140 0.860 11 C -0.187 4.187 12 C -0.119 4.119 13 H 0.129 0.871 14 C -0.007 4.007 15 O -0.242 6.242 16 C 0.066 3.934 17 C -0.239 4.239 18 C -0.107 4.107 19 C -0.187 4.187 20 C -0.104 4.104 21 C -0.191 4.191 22 C -0.163 4.163 23 C -0.261 4.261 24 C -0.034 4.034 25 H 0.254 0.746 26 H 0.114 0.886 27 H -0.227 1.227 28 H -0.219 1.219 29 H 0.157 0.843 30 H 0.242 0.758 31 H 0.093 0.907 32 H 0.099 0.901 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.157 0.843 36 H 0.160 0.840 37 H 0.159 0.841 38 H 0.165 0.835 39 H 0.151 0.849 40 H 0.115 0.885 41 H 0.112 0.888 42 H 0.177 0.823 43 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -0.441 -0.914 -0.622 1.190 hybrid contribution 0.082 -0.369 0.187 0.421 sum -0.359 -1.282 -0.435 1.401 Atomic orbital electron populations 1.86441 1.17293 1.82320 1.51435 1.24497 0.85720 1.10168 0.96598 0.94497 0.77286 0.75990 0.84669 1.20363 1.05497 0.96069 0.98876 1.22139 0.93741 0.98559 0.88670 1.67069 1.27141 1.10476 1.24141 1.18729 0.89603 0.88035 0.88012 1.44636 1.59653 1.09381 1.20171 1.22679 0.98880 0.78198 0.97823 0.85998 1.23625 0.98435 0.97707 0.98923 1.22308 0.96358 0.97622 0.95641 0.87143 1.22956 0.95314 0.83529 0.98938 1.86045 1.46243 1.39389 1.52565 1.19262 0.88729 0.94019 0.91390 1.21493 1.02051 1.02596 0.97713 1.21311 0.94505 0.95846 0.99071 1.21431 1.02183 0.96310 0.98738 1.21309 0.94877 1.00106 0.94156 1.20718 0.99412 0.95759 1.03197 1.23324 1.02032 0.95538 0.95442 1.21791 1.05526 1.02493 0.96302 1.21516 0.92718 0.93138 0.96063 0.74561 0.88563 1.22709 1.21922 0.84341 0.75755 0.90746 0.90120 0.91509 0.90854 0.84300 0.83958 0.84072 0.83455 0.84900 0.88517 0.88794 0.82332 0.82335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.57 0.12 12.82 -148.98 -1.91 -1.79 16 2 C -0.06 0.00 2.81 71.24 0.20 0.20 16 3 Si 0.77 -0.49 29.88 68.60 2.05 1.56 16 4 C -0.20 -1.30 5.39 -19.76 -0.11 -1.41 16 5 C 0.13 1.31 9.84 84.62 0.83 2.14 16 6 N -0.57 -6.71 10.39 -193.26 -2.01 -8.72 16 7 C 0.39 2.74 7.65 133.06 1.02 3.76 16 8 N -0.71 -1.03 5.53 -322.06 -1.78 -2.81 16 9 C 0.13 -0.47 4.03 45.52 0.18 -0.29 16 10 H 0.12 -0.66 6.10 -2.39 -0.01 -0.67 16 11 C -0.15 0.41 7.43 31.12 0.23 0.64 16 12 C -0.10 0.43 4.01 -10.26 -0.04 0.39 16 13 H 0.11 -0.49 8.14 -2.39 -0.02 -0.51 16 14 C 0.07 -0.11 4.58 71.98 0.33 0.22 16 15 O -0.33 -1.51 10.14 -92.38 -0.94 -2.45 16 16 C 0.11 0.60 6.69 22.51 0.15 0.75 16 17 C -0.22 -0.64 9.04 22.36 0.20 -0.44 16 18 C -0.09 -0.15 10.04 22.25 0.22 0.08 16 19 C -0.17 -0.24 10.04 22.28 0.22 -0.02 16 20 C -0.09 -0.18 10.04 22.25 0.22 0.04 16 21 C -0.17 -0.80 9.99 22.37 0.22 -0.58 16 22 C -0.13 0.79 7.39 31.12 0.23 1.02 16 23 C -0.24 -0.84 9.29 22.50 0.21 -0.63 16 24 C -0.01 -0.03 9.84 22.44 0.22 0.19 16 25 H 0.40 -4.39 8.74 -74.05 -0.65 -5.04 16 26 H 0.10 -0.45 7.96 -2.38 -0.02 -0.47 16 27 H -0.30 -2.21 7.05 99.48 0.70 -1.51 16 28 H -0.29 -1.58 7.11 99.48 0.71 -0.88 16 29 H 0.14 1.35 4.87 -2.91 -0.01 1.34 16 30 H 0.41 0.36 8.85 -92.71 -0.82 -0.46 16 31 H 0.07 -0.14 8.14 -2.38 -0.02 -0.16 16 32 H 0.08 -0.08 7.90 -2.39 -0.02 -0.10 16 33 H 0.07 -0.16 7.35 -2.39 -0.02 -0.18 16 34 H 0.07 -0.25 7.68 -2.39 -0.02 -0.27 16 35 H 0.14 -0.13 6.30 -2.91 -0.02 -0.14 16 36 H 0.14 -0.39 8.06 -2.91 -0.02 -0.42 16 37 H 0.14 -0.38 8.06 -2.91 -0.02 -0.40 16 38 H 0.15 -0.38 8.06 -2.91 -0.02 -0.40 16 39 H 0.13 0.38 8.06 -2.91 -0.02 0.36 16 40 H 0.10 -0.68 8.08 -2.39 -0.02 -0.70 16 41 H 0.09 -0.71 8.14 -2.38 -0.02 -0.73 16 42 H 0.16 -0.33 6.03 -2.91 -0.02 -0.34 16 43 H 0.16 -0.17 8.06 -2.91 -0.02 -0.19 16 Total: 0.00 -19.60 355.57 -0.42 -20.03 By element: Atomic # 1 Polarization: -11.48 SS G_CDS: -0.39 Total: -11.87 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: 4.55 Total: 6.06 kcal Atomic # 7 Polarization: -7.75 SS G_CDS: -3.79 Total: -11.54 kcal Atomic # 8 Polarization: -1.40 SS G_CDS: -2.85 Total: -4.24 kcal Atomic # 14 Polarization: -0.49 SS G_CDS: 2.05 Total: 1.56 kcal Total: -19.60 -0.42 -20.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16536078_13915762.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.210 kcal (2) G-P(sol) polarization free energy of solvation -19.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds