Wall clock time and date at job start Mon Mar 8 2021 07:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86301 * 109.47158 * 2 1 4 4 C 1.50694 * 109.47260 * 120.00586 * 2 1 3 5 5 C 1.33330 * 125.95193 * 64.96982 * 4 2 1 6 6 N 1.32122 * 114.57739 * 179.75344 * 5 4 2 7 7 C 1.29693 * 116.86613 * 0.47421 * 6 5 4 8 8 N 1.38604 * 124.94853 * 179.81066 * 7 6 5 9 9 C 1.46508 * 120.00133 * 359.70177 * 8 7 6 10 10 H 1.08998 * 112.84442 * 336.19231 * 9 8 7 11 11 C 1.53954 * 113.66998 * 107.43825 * 9 8 7 12 12 C 1.53773 * 87.02032 * 139.93128 * 11 9 8 13 13 H 1.08997 * 113.61424 * 89.23020 * 12 11 9 14 14 C 1.52998 * 113.61430 * 220.04632 * 12 11 9 15 15 O 1.42902 * 109.47338 * 274.13625 * 14 12 11 16 16 C 1.35899 * 117.00290 * 179.97438 * 15 14 12 17 17 C 1.38725 * 120.05627 * 180.02562 * 16 15 14 18 18 C 1.38145 * 119.94620 * 180.02562 * 17 16 15 19 19 C 1.38266 * 120.05239 * 359.97438 * 18 17 16 20 20 C 1.38265 * 120.11333 * 0.02562 * 19 18 17 21 21 C 1.38143 * 120.05412 * 359.97438 * 20 19 18 22 22 C 1.53776 * 113.61299 * 204.99937 * 9 8 7 23 23 S 1.70961 * 110.10171 * 359.55010 * 7 6 5 24 24 H 0.96701 * 114.00206 * 59.99296 * 1 2 3 25 25 H 1.09005 * 109.46755 * 240.00346 * 2 1 3 26 26 H 1.48500 * 109.99806 * 60.00667 * 3 2 1 27 27 H 1.48503 * 109.99628 * 181.32234 * 3 2 1 28 28 H 1.07993 * 122.71140 * 359.97438 * 5 4 2 29 29 H 0.96998 * 120.00281 * 179.69735 * 8 7 6 30 30 H 1.09003 * 113.61282 * 25.40710 * 11 9 8 31 31 H 1.09001 * 113.66319 * 254.46509 * 11 9 8 32 32 H 1.09000 * 109.47222 * 154.13859 * 14 12 11 33 33 H 1.08993 * 109.47037 * 34.13818 * 14 12 11 34 34 H 1.08000 * 120.03040 * 0.04956 * 17 16 15 35 35 H 1.07993 * 119.97832 * 179.72236 * 18 17 16 36 36 H 1.08004 * 119.94636 * 179.97438 * 19 18 17 37 37 H 1.08001 * 119.97578 * 179.97438 * 20 19 18 38 38 H 1.08001 * 120.02739 * 180.02562 * 21 20 19 39 39 H 1.08996 * 113.61555 * 105.46775 * 22 9 8 40 40 H 1.09003 * 113.69121 * 334.57329 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7105 1.2303 5 6 1.7618 -2.0026 1.5122 6 7 2.3019 -2.3916 2.6535 7 6 2.9115 -1.4850 3.3525 8 7 3.5316 -1.7064 4.5721 9 6 3.5229 -3.0458 5.1659 10 1 2.6961 -3.6608 4.8106 11 6 4.8879 -3.7555 5.1100 12 6 4.5901 -4.2666 6.5294 13 1 4.0562 -5.2167 6.5483 14 6 5.8086 -4.2514 7.4545 15 8 6.5506 -5.4609 7.2850 16 6 7.6718 -5.6078 8.0388 17 6 8.4402 -6.7571 7.9245 18 6 9.5792 -6.9043 8.6922 19 6 9.9539 -5.9070 9.5735 20 6 9.1897 -4.7605 9.6893 21 6 8.0498 -4.6086 8.9238 22 6 3.6748 -3.0422 6.6961 23 16 2.8449 0.0215 2.5469 24 1 -0.3934 0.4418 -0.7650 25 1 1.7923 -0.5138 -0.8901 26 1 1.5616 2.4678 1.2086 27 1 3.5346 1.7702 -0.0322 28 1 1.2292 -2.6775 0.8586 29 1 3.9714 -0.9747 5.0326 30 1 5.7345 -3.0706 5.0612 31 1 4.9391 -4.5472 4.3626 32 1 5.4778 -4.1703 8.4899 33 1 6.4416 -3.3992 7.2076 34 1 8.1484 -7.5361 7.2356 35 1 10.1753 -7.8007 8.6069 36 1 10.8445 -6.0240 10.1732 37 1 9.4842 -3.9830 10.3787 38 1 7.4535 -3.7127 9.0143 39 1 2.7480 -3.2589 7.2274 40 1 4.1887 -2.1623 7.0832 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_16536078_15704118.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:16:53 Heat of formation + Delta-G solvation = 39.465885 kcal Electronic energy + Delta-G solvation = -22753.649617 eV Core-core repulsion = 19242.216469 eV Total energy + Delta-G solvation = -3511.433147 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 319.103 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.36089 -40.77932 -39.99439 -38.20713 -37.75925 -35.47165 -32.04053 -31.53072 -30.94951 -29.16841 -26.93403 -26.57477 -25.06631 -23.91647 -23.30997 -22.58601 -21.05315 -20.54645 -19.47414 -19.09241 -18.45976 -17.70877 -17.31464 -16.97069 -16.85511 -16.34069 -16.17859 -15.80876 -15.69527 -15.32412 -15.27037 -14.59325 -14.39800 -14.30273 -14.26110 -14.13354 -13.67223 -13.39748 -13.11929 -12.84083 -12.58228 -12.45169 -12.36583 -12.19989 -12.03425 -11.93105 -11.73573 -11.37680 -11.09009 -10.62076 -10.30158 -10.14782 -9.94542 -9.14479 -8.74551 -5.21401 -0.04162 0.09829 0.39871 0.51794 0.66761 1.23049 1.57840 1.92532 2.00642 2.04502 2.22113 2.86282 3.27818 3.35575 3.44880 3.58776 3.65967 3.73667 3.86938 3.92248 3.99130 4.12460 4.16311 4.20858 4.27133 4.41183 4.46374 4.48984 4.51266 4.58199 4.63025 4.73183 4.76169 4.86755 4.95270 5.02641 5.06778 5.27590 5.35820 5.47758 5.61836 5.82382 5.83853 6.02059 6.46239 6.59180 6.99456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.546 6.546 2 C -0.017 4.017 3 Si 0.668 3.332 4 C -0.261 4.261 5 C 0.124 3.876 6 N -0.546 5.546 7 C 0.331 3.669 8 N -0.682 5.682 9 C 0.140 3.860 10 H 0.121 0.879 11 C -0.146 4.146 12 C -0.106 4.106 13 H 0.108 0.892 14 C 0.072 3.928 15 O -0.312 6.312 16 C 0.129 3.871 17 C -0.153 4.153 18 C -0.080 4.080 19 C -0.159 4.159 20 C -0.081 4.081 21 C -0.211 4.211 22 C -0.137 4.137 23 S 0.067 5.933 24 H 0.383 0.617 25 H 0.082 0.918 26 H -0.239 1.239 27 H -0.243 1.243 28 H 0.179 0.821 29 H 0.414 0.586 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.131 0.869 35 H 0.130 0.870 36 H 0.124 0.876 37 H 0.125 0.875 38 H 0.126 0.874 39 H 0.084 0.916 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.530 2.755 -0.914 2.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.352 6.352 2 C -0.131 4.131 3 Si 0.567 3.433 4 C -0.383 4.383 5 C -0.027 4.027 6 N -0.272 5.272 7 C -0.040 4.040 8 N -0.320 5.320 9 C 0.033 3.967 10 H 0.139 0.861 11 C -0.185 4.185 12 C -0.125 4.125 13 H 0.127 0.873 14 C -0.003 4.003 15 O -0.226 6.226 16 C 0.084 3.916 17 C -0.172 4.172 18 C -0.098 4.098 19 C -0.178 4.178 20 C -0.099 4.099 21 C -0.230 4.230 22 C -0.176 4.176 23 S 0.316 5.684 24 H 0.231 0.769 25 H 0.100 0.900 26 H -0.162 1.162 27 H -0.167 1.167 28 H 0.196 0.804 29 H 0.251 0.749 30 H 0.104 0.896 31 H 0.098 0.902 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.149 0.851 35 H 0.148 0.852 36 H 0.142 0.858 37 H 0.143 0.857 38 H 0.144 0.856 39 H 0.103 0.897 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.352 3.219 0.407 3.515 hybrid contribution -0.176 -0.586 -0.009 0.612 sum 1.176 2.633 0.398 2.911 Atomic orbital electron populations 1.86524 1.17202 1.81738 1.49746 1.23683 0.85444 1.09302 0.94666 0.95165 0.81758 0.78136 0.88192 1.24276 1.14696 0.96848 1.02488 1.21358 0.96217 0.93042 0.92083 1.66457 1.18999 1.33054 1.08653 1.23843 0.95241 0.92832 0.92044 1.44097 1.58827 1.11855 1.17250 1.22609 0.99057 0.82927 0.92108 0.86075 1.23632 0.97795 1.00402 0.96680 1.22338 0.95203 0.99607 0.95366 0.87345 1.22793 0.92011 0.85738 0.99780 1.86079 1.35413 1.40393 1.60701 1.19032 0.86873 0.94567 0.91131 1.20494 0.96160 0.97175 1.03351 1.21029 0.95331 0.98852 0.94598 1.21123 1.01118 0.94683 1.00837 1.20990 0.93751 0.97491 0.97633 1.21264 1.00706 1.00060 1.00961 1.23395 1.00351 0.97920 0.95932 1.84098 1.55872 1.12363 1.16067 0.76934 0.89996 1.16243 1.16718 0.80442 0.74879 0.89618 0.90241 0.91669 0.91865 0.85146 0.85220 0.85776 0.85742 0.85625 0.89691 0.89218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.22 12.86 -35.23 -0.45 -0.67 16 2 C -0.02 -0.01 2.98 36.00 0.11 0.10 16 3 Si 0.67 -0.37 31.07 -169.99 -5.28 -5.65 16 4 C -0.26 -0.79 5.76 -36.03 -0.21 -0.99 16 5 C 0.12 0.43 11.24 -19.14 -0.22 0.22 16 6 N -0.55 -2.37 9.83 -15.21 -0.15 -2.51 16 7 C 0.33 0.95 8.09 -87.68 -0.71 0.24 16 8 N -0.68 -0.10 5.52 -54.90 -0.30 -0.40 16 9 C 0.14 -0.07 4.36 -67.03 -0.29 -0.36 16 10 H 0.12 0.12 7.67 -51.93 -0.40 -0.27 16 11 C -0.15 0.08 7.45 -25.83 -0.19 -0.11 16 12 C -0.11 0.14 4.00 -89.81 -0.36 -0.21 16 13 H 0.11 -0.11 8.14 -51.93 -0.42 -0.53 16 14 C 0.07 -0.05 4.57 37.16 0.17 0.12 16 15 O -0.31 -0.72 10.14 -19.42 -0.20 -0.91 16 16 C 0.13 0.33 6.69 -39.22 -0.26 0.06 16 17 C -0.15 -0.33 9.99 -39.44 -0.39 -0.72 16 18 C -0.08 -0.09 10.04 -39.61 -0.40 -0.49 16 19 C -0.16 -0.15 10.04 -39.56 -0.40 -0.55 16 20 C -0.08 -0.08 10.04 -39.61 -0.40 -0.47 16 21 C -0.21 -0.29 9.04 -39.43 -0.36 -0.65 16 22 C -0.14 0.34 7.40 -25.92 -0.19 0.15 16 23 S 0.07 0.18 20.59 -107.50 -2.21 -2.03 16 24 H 0.38 -1.84 8.74 45.56 0.40 -1.45 16 25 H 0.08 -0.14 7.96 -51.93 -0.41 -0.55 16 26 H -0.24 -0.62 7.11 56.52 0.40 -0.22 16 27 H -0.24 -0.44 7.11 56.52 0.40 -0.04 16 28 H 0.18 0.30 8.06 -52.49 -0.42 -0.13 16 29 H 0.41 -0.84 8.85 -40.82 -0.36 -1.20 16 30 H 0.09 -0.05 7.92 -51.93 -0.41 -0.46 16 31 H 0.08 0.05 8.14 -51.93 -0.42 -0.37 16 32 H 0.07 -0.09 7.66 -51.93 -0.40 -0.49 16 33 H 0.06 -0.09 7.39 -51.93 -0.38 -0.47 16 34 H 0.13 0.15 8.06 -52.49 -0.42 -0.27 16 35 H 0.13 -0.13 8.06 -52.49 -0.42 -0.55 16 36 H 0.12 -0.11 8.06 -52.48 -0.42 -0.53 16 37 H 0.12 -0.13 8.06 -52.49 -0.42 -0.55 16 38 H 0.13 -0.06 6.30 -52.49 -0.33 -0.39 16 39 H 0.08 -0.22 8.14 -51.93 -0.42 -0.65 16 40 H 0.09 -0.32 8.08 -51.93 -0.42 -0.74 16 LS Contribution 351.16 15.07 5.29 5.29 Total: 0.00 -7.74 351.16 -12.70 -20.44 By element: Atomic # 1 Polarization: -4.57 SS G_CDS: -5.30 Total: -9.87 kcal Atomic # 6 Polarization: 0.42 SS G_CDS: -4.10 Total: -3.67 kcal Atomic # 7 Polarization: -2.46 SS G_CDS: -0.45 Total: -2.91 kcal Atomic # 8 Polarization: -0.94 SS G_CDS: -0.65 Total: -1.59 kcal Atomic # 14 Polarization: -0.37 SS G_CDS: -5.28 Total: -5.65 kcal Atomic # 16 Polarization: 0.18 SS G_CDS: -2.21 Total: -2.03 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -7.74 -12.70 -20.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16536078_15704118.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.904 kcal (2) G-P(sol) polarization free energy of solvation -7.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds