Wall clock time and date at job start Mon Mar 8 2021 07:16:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86301 * 109.47158 * 2 1 4 4 C 1.50694 * 109.47260 * 120.00586 * 2 1 3 5 5 C 1.33330 * 125.95193 * 64.96982 * 4 2 1 6 6 N 1.32122 * 114.57739 * 179.75344 * 5 4 2 7 7 C 1.29693 * 116.86613 * 0.47421 * 6 5 4 8 8 N 1.38604 * 124.94853 * 179.81066 * 7 6 5 9 9 C 1.46508 * 120.00133 * 359.70177 * 8 7 6 10 10 H 1.08998 * 112.84442 * 336.19231 * 9 8 7 11 11 C 1.53954 * 113.66998 * 107.43825 * 9 8 7 12 12 C 1.53773 * 87.02032 * 139.93128 * 11 9 8 13 13 H 1.08997 * 113.61424 * 89.23020 * 12 11 9 14 14 C 1.52998 * 113.61430 * 220.04632 * 12 11 9 15 15 O 1.42902 * 109.47338 * 274.13625 * 14 12 11 16 16 C 1.35899 * 117.00290 * 179.97438 * 15 14 12 17 17 C 1.38725 * 120.05627 * 180.02562 * 16 15 14 18 18 C 1.38145 * 119.94620 * 180.02562 * 17 16 15 19 19 C 1.38266 * 120.05239 * 359.97438 * 18 17 16 20 20 C 1.38265 * 120.11333 * 0.02562 * 19 18 17 21 21 C 1.38143 * 120.05412 * 359.97438 * 20 19 18 22 22 C 1.53776 * 113.61299 * 204.99937 * 9 8 7 23 23 S 1.70961 * 110.10171 * 359.55010 * 7 6 5 24 24 H 0.96701 * 114.00206 * 59.99296 * 1 2 3 25 25 H 1.09005 * 109.46755 * 240.00346 * 2 1 3 26 26 H 1.48500 * 109.99806 * 60.00667 * 3 2 1 27 27 H 1.48503 * 109.99628 * 181.32234 * 3 2 1 28 28 H 1.07993 * 122.71140 * 359.97438 * 5 4 2 29 29 H 0.96998 * 120.00281 * 179.69735 * 8 7 6 30 30 H 1.09003 * 113.61282 * 25.40710 * 11 9 8 31 31 H 1.09001 * 113.66319 * 254.46509 * 11 9 8 32 32 H 1.09000 * 109.47222 * 154.13859 * 14 12 11 33 33 H 1.08993 * 109.47037 * 34.13818 * 14 12 11 34 34 H 1.08000 * 120.03040 * 0.04956 * 17 16 15 35 35 H 1.07993 * 119.97832 * 179.72236 * 18 17 16 36 36 H 1.08004 * 119.94636 * 179.97438 * 19 18 17 37 37 H 1.08001 * 119.97578 * 179.97438 * 20 19 18 38 38 H 1.08001 * 120.02739 * 180.02562 * 21 20 19 39 39 H 1.08996 * 113.61555 * 105.46775 * 22 9 8 40 40 H 1.09003 * 113.69121 * 334.57329 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7105 1.2303 5 6 1.7618 -2.0026 1.5122 6 7 2.3019 -2.3916 2.6535 7 6 2.9115 -1.4850 3.3525 8 7 3.5316 -1.7064 4.5721 9 6 3.5229 -3.0458 5.1659 10 1 2.6961 -3.6608 4.8106 11 6 4.8879 -3.7555 5.1100 12 6 4.5901 -4.2666 6.5294 13 1 4.0562 -5.2167 6.5483 14 6 5.8086 -4.2514 7.4545 15 8 6.5506 -5.4609 7.2850 16 6 7.6718 -5.6078 8.0388 17 6 8.4402 -6.7571 7.9245 18 6 9.5792 -6.9043 8.6922 19 6 9.9539 -5.9070 9.5735 20 6 9.1897 -4.7605 9.6893 21 6 8.0498 -4.6086 8.9238 22 6 3.6748 -3.0422 6.6961 23 16 2.8449 0.0215 2.5469 24 1 -0.3934 0.4418 -0.7650 25 1 1.7923 -0.5138 -0.8901 26 1 1.5616 2.4678 1.2086 27 1 3.5346 1.7702 -0.0322 28 1 1.2292 -2.6775 0.8586 29 1 3.9714 -0.9747 5.0326 30 1 5.7345 -3.0706 5.0612 31 1 4.9391 -4.5472 4.3626 32 1 5.4778 -4.1703 8.4899 33 1 6.4416 -3.3992 7.2076 34 1 8.1484 -7.5361 7.2356 35 1 10.1753 -7.8007 8.6069 36 1 10.8445 -6.0240 10.1732 37 1 9.4842 -3.9830 10.3787 38 1 7.4535 -3.7127 9.0143 39 1 2.7480 -3.2589 7.2274 40 1 4.1887 -2.1623 7.0832 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_16536078_15704118.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:16:52 Heat of formation + Delta-G solvation = 42.791258 kcal Electronic energy + Delta-G solvation = -22753.505418 eV Core-core repulsion = 19242.216469 eV Total energy + Delta-G solvation = -3511.288948 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 319.103 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.38724 -40.89290 -40.03438 -38.24418 -37.75386 -35.53161 -32.07823 -31.61615 -30.99527 -29.17402 -26.90259 -26.62298 -25.14188 -23.98024 -23.36742 -22.61741 -21.02831 -20.66037 -19.56361 -19.13263 -18.43750 -17.78314 -17.36628 -16.97337 -16.87520 -16.36735 -16.22161 -15.91424 -15.78876 -15.38960 -15.30315 -14.68518 -14.42465 -14.35617 -14.32302 -14.16342 -13.55226 -13.40720 -13.12319 -12.90277 -12.62774 -12.53949 -12.36128 -12.24912 -12.09621 -11.90472 -11.71542 -11.34620 -11.13760 -10.79344 -10.42996 -10.24297 -10.00035 -9.21304 -8.86693 -5.19739 -0.21429 -0.06737 0.34536 0.44798 0.49334 1.22928 1.56225 1.83362 1.91246 1.99444 2.20849 2.80349 3.34105 3.41959 3.49454 3.58007 3.71586 3.74020 3.86299 3.92847 3.96883 4.19085 4.20649 4.25293 4.31659 4.45965 4.46318 4.50364 4.60026 4.61502 4.63703 4.68784 4.74846 4.89806 4.96464 4.98938 5.04176 5.27385 5.31104 5.44133 5.57132 5.74691 5.82274 6.02552 6.42310 6.83836 6.91748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.564 6.564 2 C -0.024 4.024 3 Si 0.757 3.243 4 C -0.274 4.274 5 C 0.110 3.890 6 N -0.572 5.572 7 C 0.327 3.673 8 N -0.672 5.672 9 C 0.137 3.863 10 H 0.104 0.896 11 C -0.144 4.144 12 C -0.101 4.101 13 H 0.102 0.898 14 C 0.069 3.931 15 O -0.331 6.331 16 C 0.111 3.889 17 C -0.174 4.174 18 C -0.087 4.087 19 C -0.169 4.169 20 C -0.088 4.088 21 C -0.218 4.218 22 C -0.120 4.120 23 S 0.053 5.947 24 H 0.405 0.595 25 H 0.106 0.894 26 H -0.284 1.284 27 H -0.276 1.276 28 H 0.190 0.810 29 H 0.424 0.576 30 H 0.089 0.911 31 H 0.062 0.938 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.130 0.870 35 H 0.147 0.853 36 H 0.142 0.858 37 H 0.144 0.856 38 H 0.142 0.858 39 H 0.091 0.909 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.711 3.445 -0.551 3.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.374 6.374 2 C -0.137 4.137 3 Si 0.661 3.339 4 C -0.396 4.396 5 C -0.041 4.041 6 N -0.299 5.299 7 C -0.044 4.044 8 N -0.311 5.311 9 C 0.030 3.970 10 H 0.122 0.878 11 C -0.184 4.184 12 C -0.120 4.120 13 H 0.120 0.880 14 C -0.006 4.006 15 O -0.245 6.245 16 C 0.066 3.934 17 C -0.193 4.193 18 C -0.105 4.105 19 C -0.187 4.187 20 C -0.106 4.106 21 C -0.237 4.237 22 C -0.159 4.159 23 S 0.302 5.698 24 H 0.256 0.744 25 H 0.124 0.876 26 H -0.210 1.210 27 H -0.202 1.202 28 H 0.206 0.794 29 H 0.264 0.736 30 H 0.108 0.892 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.148 0.852 35 H 0.164 0.836 36 H 0.160 0.840 37 H 0.162 0.838 38 H 0.160 0.840 39 H 0.110 0.890 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 1.521 3.907 0.754 4.259 hybrid contribution -0.218 -0.793 -0.101 0.829 sum 1.302 3.113 0.653 3.437 Atomic orbital electron populations 1.86469 1.17087 1.82343 1.51507 1.23862 0.85702 1.09794 0.94368 0.94198 0.78428 0.75705 0.85559 1.24660 1.14659 0.96979 1.03280 1.21606 0.96567 0.93630 0.92248 1.66470 1.20068 1.33904 1.09425 1.24045 0.95096 0.92627 0.92614 1.44199 1.58052 1.12497 1.16371 1.22600 0.98428 0.82430 0.93592 0.87788 1.23608 0.97874 1.00004 0.96893 1.22271 0.95227 0.99874 0.94625 0.87981 1.22949 0.91972 0.85162 1.00487 1.86053 1.35654 1.41778 1.61027 1.19261 0.87207 0.95168 0.91773 1.20710 0.96947 0.97539 1.04075 1.21299 0.95152 0.99685 0.94339 1.21435 1.01746 0.94615 1.00864 1.21321 0.93522 0.98045 0.97744 1.21503 1.01137 1.00384 1.00675 1.23335 1.00482 0.97941 0.94125 1.84096 1.56350 1.12724 1.16680 0.74353 0.87613 1.21045 1.20212 0.79364 0.73613 0.89250 0.91961 0.90589 0.90939 0.85155 0.83554 0.84050 0.83795 0.84019 0.88993 0.87323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.09 12.86 -148.98 -1.92 -2.01 16 2 C -0.02 0.00 2.98 71.23 0.21 0.21 16 3 Si 0.76 -0.82 31.07 68.60 2.13 1.31 16 4 C -0.27 -1.81 5.76 24.57 0.14 -1.67 16 5 C 0.11 0.87 11.24 83.54 0.94 1.81 16 6 N -0.57 -5.68 9.83 -202.03 -1.99 -7.67 16 7 C 0.33 2.19 8.09 179.32 1.45 3.64 16 8 N -0.67 -0.48 5.52 -327.61 -1.81 -2.28 16 9 C 0.14 -0.06 4.36 45.57 0.20 0.14 16 10 H 0.10 0.36 7.67 -2.39 -0.02 0.34 16 11 C -0.14 0.04 7.45 31.18 0.23 0.27 16 12 C -0.10 0.25 4.00 -10.27 -0.04 0.21 16 13 H 0.10 -0.11 8.14 -2.39 -0.02 -0.13 16 14 C 0.07 -0.10 4.57 71.98 0.33 0.23 16 15 O -0.33 -1.78 10.14 -92.41 -0.94 -2.72 16 16 C 0.11 0.63 6.69 22.50 0.15 0.78 16 17 C -0.17 -0.92 9.99 22.36 0.22 -0.69 16 18 C -0.09 -0.21 10.04 22.25 0.22 0.01 16 19 C -0.17 -0.23 10.04 22.28 0.22 -0.01 16 20 C -0.09 -0.11 10.04 22.25 0.22 0.11 16 21 C -0.22 -0.55 9.04 22.37 0.20 -0.35 16 22 C -0.12 0.67 7.40 31.12 0.23 0.90 16 23 S 0.05 0.34 20.59 -56.49 -1.16 -0.82 16 24 H 0.40 -4.40 8.74 -74.06 -0.65 -5.04 16 25 H 0.11 -0.48 7.96 -2.38 -0.02 -0.50 16 26 H -0.28 -1.80 7.11 99.48 0.71 -1.09 16 27 H -0.28 -1.16 7.11 99.48 0.71 -0.45 16 28 H 0.19 0.78 8.06 -2.91 -0.02 0.76 16 29 H 0.42 -1.79 8.85 -92.71 -0.82 -2.61 16 30 H 0.09 -0.09 7.92 -2.39 -0.02 -0.11 16 31 H 0.06 0.20 8.14 -2.39 -0.02 0.18 16 32 H 0.08 -0.28 7.66 -2.39 -0.02 -0.30 16 33 H 0.07 -0.25 7.39 -2.39 -0.02 -0.27 16 34 H 0.13 0.51 8.06 -2.91 -0.02 0.49 16 35 H 0.15 -0.31 8.06 -2.91 -0.02 -0.33 16 36 H 0.14 -0.40 8.06 -2.91 -0.02 -0.42 16 37 H 0.14 -0.49 8.06 -2.91 -0.02 -0.52 16 38 H 0.14 -0.26 6.30 -2.91 -0.02 -0.28 16 39 H 0.09 -0.57 8.14 -2.39 -0.02 -0.59 16 40 H 0.11 -0.98 8.08 -2.39 -0.02 -1.00 16 Total: 0.00 -19.35 351.16 -1.10 -20.45 By element: Atomic # 1 Polarization: -11.50 SS G_CDS: -0.36 Total: -11.86 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: 4.94 Total: 5.61 kcal Atomic # 7 Polarization: -6.16 SS G_CDS: -3.79 Total: -9.96 kcal Atomic # 8 Polarization: -1.88 SS G_CDS: -2.85 Total: -4.73 kcal Atomic # 14 Polarization: -0.82 SS G_CDS: 2.13 Total: 1.31 kcal Atomic # 16 Polarization: 0.34 SS G_CDS: -1.16 Total: -0.82 kcal Total: -19.35 -1.10 -20.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16536078_15704118.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.239 kcal (2) G-P(sol) polarization free energy of solvation -19.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds