Wall clock time and date at job start Mon Mar 8 2021 07:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33334 * 125.94786 * 2 1 4 4 C 1.50697 * 122.70989 * 359.97438 * 3 2 1 5 5 O 1.42896 * 109.47462 * 330.00049 * 4 3 2 6 6 Si 1.86300 * 109.46966 * 210.00133 * 4 3 2 7 7 N 1.32115 * 114.57590 * 180.02562 * 3 2 1 8 8 C 1.29686 * 116.87028 * 359.97438 * 7 3 2 9 9 N 1.38610 * 124.95084 * 179.97438 * 8 7 3 10 10 C 1.46501 * 119.99908 * 179.97438 * 9 8 7 11 11 H 1.08993 * 112.90929 * 336.25398 * 10 9 8 12 12 C 1.53962 * 113.66387 * 107.55609 * 10 9 8 13 13 C 1.53782 * 87.11063 * 139.88885 * 12 10 9 14 14 H 1.08997 * 113.61225 * 89.18406 * 13 12 10 15 15 C 1.52998 * 113.68747 * 220.07804 * 13 12 10 16 16 O 1.42901 * 109.47093 * 272.53261 * 15 13 12 17 17 C 1.35904 * 116.99890 * 180.02562 * 16 15 13 18 18 C 1.38724 * 120.05905 * 359.72753 * 17 16 15 19 19 C 1.38146 * 119.94605 * 179.74363 * 18 17 16 20 20 C 1.38261 * 120.05604 * 0.50957 * 19 18 17 21 21 C 1.38266 * 120.10792 * 359.76654 * 20 19 18 22 22 C 1.38146 * 120.06031 * 359.97438 * 21 20 19 23 23 C 1.53781 * 87.08260 * 334.63747 * 13 12 10 24 24 S 1.70967 * 110.10178 * 0.24630 * 8 7 3 25 25 H 1.09008 * 109.47192 * 90.00356 * 1 2 3 26 26 H 1.09007 * 109.46910 * 209.99848 * 1 2 3 27 27 H 1.09002 * 109.47286 * 330.00030 * 1 2 3 28 28 H 1.08994 * 109.47069 * 90.00160 * 4 3 2 29 29 H 0.96702 * 114.00254 * 300.00372 * 5 4 3 30 30 H 1.48495 * 110.00194 * 58.68359 * 6 4 3 31 31 H 1.48501 * 109.99799 * 180.02562 * 6 4 3 32 32 H 0.97002 * 120.00295 * 0.02562 * 9 8 7 33 33 H 1.08997 * 113.53543 * 25.33559 * 12 10 9 34 34 H 1.08998 * 113.73879 * 254.47157 * 12 10 9 35 35 H 1.08995 * 109.47742 * 32.53801 * 15 13 12 36 36 H 1.09003 * 109.47049 * 152.53819 * 15 13 12 37 37 H 1.08008 * 120.02819 * 359.97438 * 18 17 16 38 38 H 1.07999 * 119.97110 * 180.28104 * 19 18 17 39 39 H 1.07998 * 119.94619 * 179.74559 * 20 19 18 40 40 H 1.07998 * 119.97031 * 179.97438 * 21 20 19 41 41 H 1.08001 * 120.03188 * 180.02562 * 22 21 20 42 42 H 1.09002 * 113.61445 * 139.98212 * 23 13 12 43 43 H 1.09002 * 113.61408 * 270.79943 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2897 1.0794 0.0000 4 6 1.7413 2.4830 -0.0006 5 8 0.4814 2.5020 -0.6746 6 14 2.9324 3.6148 -0.8787 7 7 3.5849 0.8189 -0.0005 8 6 3.9315 -0.4308 -0.0005 9 7 5.2385 -0.8924 -0.0015 10 6 5.5066 -2.3327 -0.0007 11 1 4.6812 -2.9177 0.4048 12 6 6.0365 -2.8633 -1.3454 13 6 6.9952 -3.7471 -0.5301 14 1 6.5775 -4.7195 -0.2695 15 6 8.3999 -3.8448 -1.1284 16 8 8.4406 -4.9133 -2.0764 17 6 9.6254 -5.1369 -2.7035 18 6 10.7245 -4.3407 -2.4167 19 6 11.9291 -4.5734 -3.0517 20 6 12.0371 -5.5922 -3.9802 21 6 10.9415 -6.3835 -4.2720 22 6 9.7360 -6.1583 -3.6359 23 6 6.8755 -2.7041 0.5937 24 16 2.5414 -1.4260 -0.0066 25 1 -0.3634 -0.0001 -1.0277 26 1 -0.3633 -0.8901 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 1.6087 2.8217 1.0269 29 1 0.5240 2.2119 -1.5961 30 1 3.1463 3.1454 -2.2712 31 1 2.4033 5.0023 -0.8856 32 1 5.9756 -0.2619 -0.0019 33 1 6.5430 -2.1055 -1.9432 34 1 5.2992 -3.4289 -1.9151 35 1 8.6489 -2.9077 -1.6263 36 1 9.1208 -4.0366 -0.3336 37 1 10.6396 -3.5418 -1.6948 38 1 12.7863 -3.9566 -2.8254 39 1 12.9785 -5.7699 -4.4786 40 1 11.0281 -7.1784 -4.9979 41 1 8.8807 -6.7770 -3.8638 42 1 6.8146 -3.1412 1.5904 43 1 7.6123 -1.9036 0.5268 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_16536078_15704122.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:16:57 Heat of formation + Delta-G solvation = 32.625725 kcal Electronic energy + Delta-G solvation = -24847.198777 eV Core-core repulsion = 21179.931399 eV Total energy + Delta-G solvation = -3667.267378 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 333.119 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.41541 -40.99735 -40.33238 -38.28370 -37.78602 -35.52287 -32.64369 -32.01037 -31.06704 -29.60440 -28.70428 -27.01488 -25.67714 -24.79332 -23.96250 -23.35704 -22.60320 -21.32915 -20.24889 -19.21944 -19.10171 -18.01622 -17.54740 -17.25853 -17.00803 -16.86106 -16.60925 -16.23515 -16.17759 -15.63195 -15.35102 -15.30487 -14.53671 -14.37710 -14.34958 -14.14588 -13.87546 -13.77883 -13.72440 -13.46095 -13.33128 -13.18638 -12.75677 -12.62514 -12.43369 -12.34387 -12.17869 -12.03951 -11.78681 -11.76244 -11.47501 -11.00862 -10.58955 -10.43698 -10.00185 -9.96443 -9.17023 -8.61820 -4.66289 0.03035 0.18644 0.37949 0.49603 0.79717 1.39839 1.80851 1.84144 1.97058 2.11766 2.15720 2.84237 3.12778 3.23472 3.31307 3.45793 3.53161 3.54169 3.81985 3.89060 4.00303 4.07557 4.16377 4.18641 4.23392 4.33806 4.36246 4.43653 4.45473 4.48020 4.54472 4.59440 4.68968 4.74413 4.76724 4.81269 4.90218 5.01721 5.04806 5.15318 5.31463 5.33299 5.45934 5.59444 5.60103 5.80783 6.23896 6.39139 6.42908 6.95700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.241 4.241 3 C 0.068 3.932 4 C -0.042 4.042 5 O -0.526 6.526 6 Si 0.721 3.279 7 N -0.539 5.539 8 C 0.320 3.680 9 N -0.683 5.683 10 C 0.128 3.872 11 H 0.110 0.890 12 C -0.148 4.148 13 C -0.107 4.107 14 H 0.109 0.891 15 C 0.071 3.929 16 O -0.313 6.313 17 C 0.129 3.871 18 C -0.211 4.211 19 C -0.080 4.080 20 C -0.159 4.159 21 C -0.080 4.080 22 C -0.153 4.153 23 C -0.132 4.132 24 S 0.098 5.902 25 H 0.068 0.932 26 H 0.060 0.940 27 H 0.092 0.908 28 H 0.124 0.876 29 H 0.376 0.624 30 H -0.268 1.268 31 H -0.261 1.261 32 H 0.414 0.586 33 H 0.091 0.909 34 H 0.080 0.920 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.126 0.874 38 H 0.125 0.875 39 H 0.124 0.876 40 H 0.130 0.870 41 H 0.130 0.870 42 H 0.086 0.914 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.053 -2.290 1.193 3.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.364 4.364 3 C -0.062 4.062 4 C -0.155 4.155 5 O -0.331 6.331 6 Si 0.621 3.379 7 N -0.265 5.265 8 C -0.051 4.051 9 N -0.322 5.322 10 C 0.022 3.978 11 H 0.128 0.872 12 C -0.187 4.187 13 C -0.126 4.126 14 H 0.127 0.873 15 C -0.004 4.004 16 O -0.227 6.227 17 C 0.084 3.916 18 C -0.229 4.229 19 C -0.098 4.098 20 C -0.177 4.177 21 C -0.098 4.098 22 C -0.172 4.172 23 C -0.170 4.170 24 S 0.347 5.653 25 H 0.087 0.913 26 H 0.079 0.921 27 H 0.110 0.890 28 H 0.142 0.858 29 H 0.224 0.776 30 H -0.193 1.193 31 H -0.186 1.186 32 H 0.252 0.748 33 H 0.110 0.890 34 H 0.099 0.901 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.144 0.856 38 H 0.143 0.857 39 H 0.142 0.858 40 H 0.148 0.852 41 H 0.148 0.852 42 H 0.105 0.895 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 3.040 -2.489 1.087 4.076 hybrid contribution -0.478 0.533 -0.544 0.899 sum 2.561 -1.955 0.543 3.268 Atomic orbital electron populations 1.20212 0.86485 1.03237 1.02592 1.25134 1.01329 0.92798 1.17124 1.20094 0.86848 0.97110 1.02158 1.24459 0.91960 0.95388 1.03653 1.86604 1.28542 1.89101 1.28890 0.93651 0.86178 0.76396 0.81635 1.65730 1.17028 1.16464 1.27304 1.23325 0.91922 0.91424 0.98434 1.43953 1.01754 1.06556 1.79965 1.22642 0.97933 0.79522 0.97718 0.87184 1.23703 0.99171 0.99014 0.96818 1.22347 0.94167 0.99454 0.96605 0.87262 1.22786 0.97541 0.89222 0.90836 1.86070 1.30614 1.51825 1.54152 1.19019 0.84712 0.94844 0.93064 1.21267 0.93791 1.02755 1.05123 1.20997 0.96835 0.96914 0.95104 1.21127 0.99231 0.97259 1.00096 1.21032 0.91934 0.98656 0.98209 1.20493 0.99195 0.98990 0.98496 1.23345 0.96143 0.98546 0.98966 1.83970 0.96562 1.10613 1.74124 0.91308 0.92126 0.88992 0.85806 0.77644 1.19265 1.18637 0.74765 0.89018 0.90115 0.91705 0.91565 0.85575 0.85710 0.85768 0.85228 0.85161 0.89488 0.88696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.02 8.95 36.01 0.32 0.30 16 2 C -0.24 -0.45 6.50 -36.02 -0.23 -0.69 16 3 C 0.07 0.16 5.92 -84.18 -0.50 -0.34 16 4 C -0.04 -0.05 2.82 36.00 0.10 0.05 16 5 O -0.53 -0.64 9.90 -35.23 -0.35 -0.99 16 6 Si 0.72 0.97 32.08 -169.99 -5.45 -4.48 16 7 N -0.54 -1.41 8.94 -11.36 -0.10 -1.51 16 8 C 0.32 0.43 8.24 -87.68 -0.72 -0.29 16 9 N -0.68 0.84 5.52 -54.90 -0.30 0.54 16 10 C 0.13 -0.35 4.24 -67.02 -0.28 -0.64 16 11 H 0.11 -0.29 7.06 -51.93 -0.37 -0.66 16 12 C -0.15 0.36 7.44 -25.82 -0.19 0.17 16 13 C -0.11 0.32 4.01 -89.81 -0.36 -0.04 16 14 H 0.11 -0.31 8.14 -51.93 -0.42 -0.73 16 15 C 0.07 -0.13 4.58 37.16 0.17 0.04 16 16 O -0.31 -0.40 10.14 -19.44 -0.20 -0.60 16 17 C 0.13 0.23 6.69 -39.22 -0.26 -0.03 16 18 C -0.21 -0.16 9.04 -39.44 -0.36 -0.51 16 19 C -0.08 -0.04 10.04 -39.61 -0.40 -0.43 16 20 C -0.16 -0.08 10.04 -39.56 -0.40 -0.47 16 21 C -0.08 -0.05 10.04 -39.60 -0.40 -0.45 16 22 C -0.15 -0.23 9.99 -39.43 -0.39 -0.62 16 23 C -0.13 0.54 7.39 -25.92 -0.19 0.35 16 24 S 0.10 0.08 21.69 -107.50 -2.33 -2.25 16 25 H 0.07 -0.03 8.14 -51.92 -0.42 -0.45 16 26 H 0.06 -0.01 8.14 -51.93 -0.42 -0.43 16 27 H 0.09 0.08 6.62 -51.93 -0.34 -0.26 16 28 H 0.12 0.06 7.96 -51.93 -0.41 -0.35 16 29 H 0.38 -0.40 8.68 45.56 0.40 0.00 16 30 H -0.27 -1.12 7.11 56.52 0.40 -0.71 16 31 H -0.26 -0.94 7.11 56.52 0.40 -0.54 16 32 H 0.41 -0.93 8.85 -40.82 -0.36 -1.29 16 33 H 0.09 -0.19 7.90 -51.93 -0.41 -0.60 16 34 H 0.08 -0.14 8.14 -51.93 -0.42 -0.57 16 35 H 0.06 -0.16 7.36 -51.93 -0.38 -0.54 16 36 H 0.07 -0.17 7.67 -51.93 -0.40 -0.57 16 37 H 0.13 -0.15 6.30 -52.48 -0.33 -0.48 16 38 H 0.12 -0.18 8.06 -52.49 -0.42 -0.61 16 39 H 0.12 -0.16 8.06 -52.49 -0.42 -0.58 16 40 H 0.13 -0.19 8.06 -52.49 -0.42 -0.61 16 41 H 0.13 0.06 8.06 -52.49 -0.42 -0.36 16 42 H 0.09 -0.38 8.14 -51.93 -0.42 -0.81 16 43 H 0.09 -0.46 8.08 -51.93 -0.42 -0.88 16 LS Contribution 367.82 15.07 5.54 5.54 Total: 0.00 -6.07 367.82 -13.32 -19.39 By element: Atomic # 1 Polarization: -6.00 SS G_CDS: -6.03 Total: -12.03 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: -4.09 Total: -3.61 kcal Atomic # 7 Polarization: -0.57 SS G_CDS: -0.40 Total: -0.98 kcal Atomic # 8 Polarization: -1.04 SS G_CDS: -0.55 Total: -1.59 kcal Atomic # 14 Polarization: 0.97 SS G_CDS: -5.45 Total: -4.48 kcal Atomic # 16 Polarization: 0.08 SS G_CDS: -2.33 Total: -2.25 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -6.07 -13.32 -19.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16536078_15704122.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.017 kcal (2) G-P(sol) polarization free energy of solvation -6.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds