Wall clock time and date at job start Mon Mar 8 2021 07:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33334 * 125.94786 * 2 1 4 4 C 1.50697 * 122.70989 * 359.97438 * 3 2 1 5 5 O 1.42896 * 109.47462 * 330.00049 * 4 3 2 6 6 Si 1.86300 * 109.46966 * 210.00133 * 4 3 2 7 7 N 1.32115 * 114.57590 * 180.02562 * 3 2 1 8 8 C 1.29686 * 116.87028 * 359.97438 * 7 3 2 9 9 N 1.38610 * 124.95084 * 179.97438 * 8 7 3 10 10 C 1.46501 * 119.99908 * 179.97438 * 9 8 7 11 11 H 1.08993 * 112.90929 * 336.25398 * 10 9 8 12 12 C 1.53962 * 113.66387 * 107.55609 * 10 9 8 13 13 C 1.53782 * 87.11063 * 139.88885 * 12 10 9 14 14 H 1.08997 * 113.61225 * 89.18406 * 13 12 10 15 15 C 1.52998 * 113.68747 * 220.07804 * 13 12 10 16 16 O 1.42901 * 109.47093 * 272.53261 * 15 13 12 17 17 C 1.35904 * 116.99890 * 180.02562 * 16 15 13 18 18 C 1.38724 * 120.05905 * 359.72753 * 17 16 15 19 19 C 1.38146 * 119.94605 * 179.74363 * 18 17 16 20 20 C 1.38261 * 120.05604 * 0.50957 * 19 18 17 21 21 C 1.38266 * 120.10792 * 359.76654 * 20 19 18 22 22 C 1.38146 * 120.06031 * 359.97438 * 21 20 19 23 23 C 1.53781 * 87.08260 * 334.63747 * 13 12 10 24 24 S 1.70967 * 110.10178 * 0.24630 * 8 7 3 25 25 H 1.09008 * 109.47192 * 90.00356 * 1 2 3 26 26 H 1.09007 * 109.46910 * 209.99848 * 1 2 3 27 27 H 1.09002 * 109.47286 * 330.00030 * 1 2 3 28 28 H 1.08994 * 109.47069 * 90.00160 * 4 3 2 29 29 H 0.96702 * 114.00254 * 300.00372 * 5 4 3 30 30 H 1.48495 * 110.00194 * 58.68359 * 6 4 3 31 31 H 1.48501 * 109.99799 * 180.02562 * 6 4 3 32 32 H 0.97002 * 120.00295 * 0.02562 * 9 8 7 33 33 H 1.08997 * 113.53543 * 25.33559 * 12 10 9 34 34 H 1.08998 * 113.73879 * 254.47157 * 12 10 9 35 35 H 1.08995 * 109.47742 * 32.53801 * 15 13 12 36 36 H 1.09003 * 109.47049 * 152.53819 * 15 13 12 37 37 H 1.08008 * 120.02819 * 359.97438 * 18 17 16 38 38 H 1.07999 * 119.97110 * 180.28104 * 19 18 17 39 39 H 1.07998 * 119.94619 * 179.74559 * 20 19 18 40 40 H 1.07998 * 119.97031 * 179.97438 * 21 20 19 41 41 H 1.08001 * 120.03188 * 180.02562 * 22 21 20 42 42 H 1.09002 * 113.61445 * 139.98212 * 23 13 12 43 43 H 1.09002 * 113.61408 * 270.79943 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2897 1.0794 0.0000 4 6 1.7413 2.4830 -0.0006 5 8 0.4814 2.5020 -0.6746 6 14 2.9324 3.6148 -0.8787 7 7 3.5849 0.8189 -0.0005 8 6 3.9315 -0.4308 -0.0005 9 7 5.2385 -0.8924 -0.0015 10 6 5.5066 -2.3327 -0.0007 11 1 4.6812 -2.9177 0.4048 12 6 6.0365 -2.8633 -1.3454 13 6 6.9952 -3.7471 -0.5301 14 1 6.5775 -4.7195 -0.2695 15 6 8.3999 -3.8448 -1.1284 16 8 8.4406 -4.9133 -2.0764 17 6 9.6254 -5.1369 -2.7035 18 6 10.7245 -4.3407 -2.4167 19 6 11.9291 -4.5734 -3.0517 20 6 12.0371 -5.5922 -3.9802 21 6 10.9415 -6.3835 -4.2720 22 6 9.7360 -6.1583 -3.6359 23 6 6.8755 -2.7041 0.5937 24 16 2.5414 -1.4260 -0.0066 25 1 -0.3634 -0.0001 -1.0277 26 1 -0.3633 -0.8901 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 1.6087 2.8217 1.0269 29 1 0.5240 2.2119 -1.5961 30 1 3.1463 3.1454 -2.2712 31 1 2.4033 5.0023 -0.8856 32 1 5.9756 -0.2619 -0.0019 33 1 6.5430 -2.1055 -1.9432 34 1 5.2992 -3.4289 -1.9151 35 1 8.6489 -2.9077 -1.6263 36 1 9.1208 -4.0366 -0.3336 37 1 10.6396 -3.5418 -1.6948 38 1 12.7863 -3.9566 -2.8254 39 1 12.9785 -5.7699 -4.4786 40 1 11.0281 -7.1784 -4.9979 41 1 8.8807 -6.7770 -3.8638 42 1 6.8146 -3.1412 1.5904 43 1 7.6123 -1.9036 0.5268 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_16536078_15704122.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:16:56 Heat of formation + Delta-G solvation = 39.229409 kcal Electronic energy + Delta-G solvation = -24846.912419 eV Core-core repulsion = 21179.931399 eV Total energy + Delta-G solvation = -3666.981021 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 333.119 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.34454 -41.04738 -40.22988 -38.26981 -37.83978 -35.48318 -32.66219 -32.00096 -31.03867 -29.60569 -28.66895 -26.77374 -25.72541 -24.78196 -23.94480 -23.34451 -22.53871 -21.24026 -20.18761 -19.21248 -19.09640 -18.08619 -17.49871 -17.22973 -16.93581 -16.82825 -16.67651 -16.13484 -16.08618 -15.74221 -15.37717 -15.27348 -14.46732 -14.33621 -14.33288 -14.28768 -13.85466 -13.82291 -13.50391 -13.44870 -13.30191 -13.09761 -12.80620 -12.55996 -12.47160 -12.30673 -12.12874 -11.95578 -11.88650 -11.66577 -11.30163 -10.98111 -10.67916 -10.50501 -10.07086 -9.97600 -9.18576 -8.63285 -4.80237 -0.04433 0.13991 0.36939 0.47254 0.72365 1.28305 1.65813 1.80914 1.89554 1.98021 2.23066 2.82742 3.27055 3.35560 3.45366 3.49859 3.67093 3.74654 3.88083 3.94919 4.11532 4.18927 4.23190 4.28701 4.31591 4.34293 4.47965 4.51412 4.54109 4.62401 4.68828 4.72050 4.76993 4.78133 4.86791 4.97877 5.00488 5.05966 5.06666 5.24270 5.30806 5.33397 5.46559 5.59597 5.68302 5.84452 6.29749 6.42784 6.45145 6.90664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C -0.256 4.256 3 C 0.056 3.944 4 C -0.041 4.041 5 O -0.532 6.532 6 Si 0.782 3.218 7 N -0.558 5.558 8 C 0.312 3.688 9 N -0.674 5.674 10 C 0.125 3.875 11 H 0.111 0.889 12 C -0.148 4.148 13 C -0.102 4.102 14 H 0.107 0.893 15 C 0.067 3.933 16 O -0.329 6.329 17 C 0.112 3.888 18 C -0.218 4.218 19 C -0.089 4.089 20 C -0.170 4.170 21 C -0.088 4.088 22 C -0.174 4.174 23 C -0.118 4.118 24 S 0.111 5.889 25 H 0.075 0.925 26 H 0.065 0.935 27 H 0.087 0.913 28 H 0.133 0.867 29 H 0.384 0.616 30 H -0.307 1.307 31 H -0.292 1.292 32 H 0.419 0.581 33 H 0.089 0.911 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.143 0.857 38 H 0.143 0.857 39 H 0.140 0.860 40 H 0.146 0.854 41 H 0.132 0.868 42 H 0.096 0.904 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.771 -2.533 1.838 4.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.379 4.379 3 C -0.074 4.074 4 C -0.154 4.154 5 O -0.339 6.339 6 Si 0.688 3.312 7 N -0.286 5.286 8 C -0.059 4.059 9 N -0.314 5.314 10 C 0.020 3.980 11 H 0.128 0.872 12 C -0.188 4.188 13 C -0.121 4.121 14 H 0.125 0.875 15 C -0.008 4.008 16 O -0.244 6.244 17 C 0.067 3.933 18 C -0.237 4.237 19 C -0.107 4.107 20 C -0.188 4.188 21 C -0.106 4.106 22 C -0.192 4.192 23 C -0.156 4.156 24 S 0.360 5.640 25 H 0.094 0.906 26 H 0.084 0.916 27 H 0.105 0.895 28 H 0.151 0.849 29 H 0.234 0.766 30 H -0.234 1.234 31 H -0.220 1.220 32 H 0.259 0.741 33 H 0.107 0.893 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.160 0.840 38 H 0.161 0.839 39 H 0.158 0.842 40 H 0.164 0.836 41 H 0.150 0.850 42 H 0.115 0.885 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 3.775 -2.749 1.746 4.986 hybrid contribution -0.680 0.580 -0.808 1.205 sum 3.095 -2.170 0.939 3.895 Atomic orbital electron populations 1.20204 0.85701 1.03211 1.03046 1.25374 1.02102 0.93181 1.17280 1.20242 0.87046 0.97563 1.02525 1.24484 0.91777 0.95000 1.04110 1.86582 1.28531 1.89120 1.29689 0.92910 0.85318 0.73835 0.79160 1.65738 1.17231 1.17152 1.28471 1.23585 0.92919 0.91372 0.98046 1.44090 1.01050 1.07282 1.78965 1.22745 0.98795 0.78644 0.97809 0.87159 1.23688 0.99167 0.99023 0.96885 1.22303 0.93393 0.99578 0.96861 0.87468 1.22972 0.98385 0.88769 0.90662 1.86048 1.30671 1.52892 1.54763 1.19240 0.85251 0.95318 0.93474 1.21507 0.93630 1.03048 1.05498 1.21318 0.97387 0.97109 0.94888 1.21425 0.99866 0.97228 1.00240 1.21297 0.91728 0.99148 0.98389 1.20711 0.99809 0.99527 0.99174 1.23305 0.95206 0.98260 0.98852 1.83859 0.96096 1.09991 1.74047 0.90590 0.91631 0.89476 0.84946 0.76636 1.23431 1.21950 0.74148 0.89266 0.91028 0.91089 0.90657 0.83978 0.83888 0.84189 0.83639 0.85045 0.88545 0.87467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.05 8.95 71.24 0.64 0.59 16 2 C -0.26 -1.00 6.50 24.58 0.16 -0.84 16 3 C 0.06 0.28 5.92 41.41 0.25 0.53 16 4 C -0.04 -0.12 2.82 71.23 0.20 0.08 16 5 O -0.53 -1.43 9.90 -148.98 -1.47 -2.90 16 6 Si 0.78 2.79 32.08 68.60 2.20 4.99 16 7 N -0.56 -3.05 8.94 -189.86 -1.70 -4.75 16 8 C 0.31 0.83 8.24 179.32 1.48 2.31 16 9 N -0.67 1.91 5.52 -327.60 -1.81 0.10 16 10 C 0.13 -0.75 4.24 45.58 0.19 -0.56 16 11 H 0.11 -0.63 7.06 -2.39 -0.02 -0.65 16 12 C -0.15 0.72 7.44 31.18 0.23 0.95 16 13 C -0.10 0.65 4.01 -10.27 -0.04 0.61 16 14 H 0.11 -0.61 8.14 -2.39 -0.02 -0.63 16 15 C 0.07 -0.26 4.58 71.98 0.33 0.07 16 16 O -0.33 -1.03 10.14 -92.46 -0.94 -1.97 16 17 C 0.11 0.47 6.69 22.51 0.15 0.62 16 18 C -0.22 -0.30 9.04 22.36 0.20 -0.10 16 19 C -0.09 -0.04 10.04 22.25 0.22 0.18 16 20 C -0.17 -0.12 10.04 22.28 0.22 0.10 16 21 C -0.09 -0.13 10.04 22.25 0.22 0.09 16 22 C -0.17 -0.68 9.99 22.37 0.22 -0.46 16 23 C -0.12 1.11 7.39 31.12 0.23 1.34 16 24 S 0.11 0.19 21.69 -56.49 -1.23 -1.03 16 25 H 0.08 -0.07 8.14 -2.38 -0.02 -0.09 16 26 H 0.06 -0.03 8.14 -2.38 -0.02 -0.05 16 27 H 0.09 0.16 6.62 -2.39 -0.02 0.14 16 28 H 0.13 0.12 7.96 -2.39 -0.02 0.10 16 29 H 0.38 -0.64 8.68 -74.06 -0.64 -1.28 16 30 H -0.31 -3.08 7.11 99.48 0.71 -2.37 16 31 H -0.29 -2.48 7.11 99.48 0.71 -1.77 16 32 H 0.42 -2.12 8.85 -92.71 -0.82 -2.94 16 33 H 0.09 -0.37 7.90 -2.39 -0.02 -0.39 16 34 H 0.07 -0.21 8.14 -2.39 -0.02 -0.22 16 35 H 0.07 -0.37 7.36 -2.39 -0.02 -0.39 16 36 H 0.08 -0.43 7.67 -2.39 -0.02 -0.45 16 37 H 0.14 -0.43 6.30 -2.91 -0.02 -0.44 16 38 H 0.14 -0.57 8.06 -2.91 -0.02 -0.60 16 39 H 0.14 -0.46 8.06 -2.91 -0.02 -0.48 16 40 H 0.15 -0.42 8.06 -2.91 -0.02 -0.44 16 41 H 0.13 0.31 8.06 -2.91 -0.02 0.29 16 42 H 0.10 -1.01 8.14 -2.39 -0.02 -1.03 16 43 H 0.11 -1.23 8.08 -2.39 -0.02 -1.25 16 Total: 0.00 -14.58 367.82 -0.41 -14.99 By element: Atomic # 1 Polarization: -14.56 SS G_CDS: -0.38 Total: -14.95 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: 4.91 Total: 5.53 kcal Atomic # 7 Polarization: -1.15 SS G_CDS: -3.51 Total: -4.65 kcal Atomic # 8 Polarization: -2.46 SS G_CDS: -2.41 Total: -4.88 kcal Atomic # 14 Polarization: 2.79 SS G_CDS: 2.20 Total: 4.99 kcal Atomic # 16 Polarization: 0.19 SS G_CDS: -1.23 Total: -1.03 kcal Total: -14.58 -0.41 -14.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16536078_15704122.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.223 kcal (2) G-P(sol) polarization free energy of solvation -14.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds