Wall clock time and date at job start Mon Mar 8 2021 07:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42894 * 1 3 3 Si 1.86297 * 109.47271 * 2 1 4 4 C 1.50704 * 109.47001 * 120.00395 * 2 1 3 5 5 C 1.37983 * 120.32381 * 244.99798 * 4 2 1 6 6 N 1.32004 * 120.90205 * 179.97438 * 5 4 2 7 7 C 1.32337 * 121.64815 * 0.02562 * 6 5 4 8 8 N 1.39142 * 119.72251 * 179.97438 * 7 6 5 9 9 C 1.46499 * 119.99716 * 359.71922 * 8 7 6 10 10 H 1.08998 * 112.85361 * 336.47085 * 9 8 7 11 11 C 1.53778 * 113.61557 * 107.77973 * 9 8 7 12 12 C 1.53785 * 87.08457 * 139.98112 * 11 9 8 13 13 H 1.09000 * 113.69324 * 89.12487 * 12 11 9 14 14 C 1.52995 * 113.61616 * 220.02571 * 12 11 9 15 15 O 1.42910 * 109.46794 * 272.49378 * 14 12 11 16 16 C 1.35896 * 117.00013 * 180.02562 * 15 14 12 17 17 C 1.38733 * 120.05480 * 359.72692 * 16 15 14 18 18 C 1.38153 * 119.94240 * 179.70065 * 17 16 15 19 19 C 1.38265 * 120.05402 * 0.59401 * 18 17 16 20 20 C 1.38267 * 120.10956 * 359.68039 * 19 18 17 21 21 C 1.38145 * 120.05903 * 0.02562 * 20 19 18 22 22 C 1.53786 * 113.61394 * 205.27945 * 9 8 7 23 23 C 1.39347 * 120.56074 * 0.24807 * 7 6 5 24 24 F 1.35103 * 120.46885 * 179.72211 * 23 7 6 25 25 C 1.38442 * 119.05603 * 359.50149 * 23 7 6 26 26 H 0.96700 * 114.00264 * 60.00014 * 1 2 3 27 27 H 1.09003 * 109.47138 * 239.99790 * 2 1 3 28 28 H 1.48495 * 109.99873 * 298.68318 * 3 2 1 29 29 H 1.48498 * 109.99843 * 60.00297 * 3 2 1 30 30 H 1.08004 * 119.54995 * 0.02562 * 5 4 2 31 31 H 0.97001 * 120.00434 * 180.02562 * 8 7 6 32 32 H 1.08997 * 113.61721 * 254.52733 * 11 9 8 33 33 H 1.09004 * 113.61436 * 25.43627 * 11 9 8 34 34 H 1.09000 * 109.47385 * 32.48954 * 14 12 11 35 35 H 1.09005 * 109.47361 * 152.49686 * 14 12 11 36 36 H 1.07994 * 120.03116 * 359.97438 * 17 16 15 37 37 H 1.07994 * 119.96930 * 180.31852 * 18 17 16 38 38 H 1.07995 * 119.94325 * 179.70173 * 19 18 17 39 39 H 1.08004 * 119.96656 * 180.02562 * 20 19 18 40 40 H 1.07999 * 120.02562 * 179.97438 * 21 20 19 41 41 H 1.08999 * 113.61272 * 334.56869 * 22 9 8 42 42 H 1.09001 * 113.61514 * 105.47520 * 22 9 8 43 43 H 1.08001 * 120.75836 * 180.23885 * 25 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7105 1.2305 5 6 2.6381 -0.0203 2.1937 6 7 3.0829 -0.6311 3.2761 7 6 2.8720 -1.9213 3.4815 8 7 3.3596 -2.5247 4.6366 9 6 4.1082 -1.7334 5.6163 10 1 4.5654 -0.8444 5.1819 11 6 3.3262 -1.4561 6.9110 12 6 4.6436 -1.6998 7.6660 13 1 5.2478 -0.8017 7.7939 14 6 4.4686 -2.4883 8.9654 15 8 4.1825 -1.5853 10.0355 16 6 3.9982 -2.1277 11.2678 17 6 4.0853 -3.5013 11.4425 18 6 3.9038 -4.0497 12.6975 19 6 3.6233 -3.2319 13.7765 20 6 3.5304 -1.8632 13.6039 21 6 3.7171 -1.3094 12.3522 22 6 5.0756 -2.5679 6.4722 23 6 2.1707 -2.6820 2.5481 24 9 1.9613 -4.0002 2.7571 25 6 1.6876 -2.0667 1.4059 26 1 -0.3934 0.4417 -0.7650 27 1 1.7923 -0.5139 -0.8900 28 1 1.5878 2.4585 -1.2242 29 1 1.5615 2.4678 1.2085 30 1 2.8293 1.0344 2.0607 31 1 3.2077 -3.4702 4.7912 32 1 2.9610 -0.4322 6.9898 33 1 2.5571 -2.1985 7.1242 34 1 3.6445 -3.1931 8.8546 35 1 5.3862 -3.0338 9.1859 36 1 4.2993 -4.1409 10.5991 37 1 3.9766 -5.1184 12.8349 38 1 3.4769 -3.6630 14.7558 39 1 3.3116 -1.2266 14.4485 40 1 3.6440 -0.2403 12.2179 41 1 4.7848 -3.6142 6.5653 42 1 6.1226 -2.4414 6.1967 43 1 1.1372 -2.6292 0.6663 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_16536078_17656566.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:17:02 Heat of formation + Delta-G solvation = -12.793319 kcal Electronic energy + Delta-G solvation = -26673.676079 eV Core-core repulsion = 22601.370580 eV Total energy + Delta-G solvation = -4072.305499 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 331.137 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.83419 -41.51133 -41.10612 -40.12103 -38.24040 -37.92403 -35.66381 -33.23250 -32.04230 -31.59368 -30.83901 -29.01300 -26.85365 -26.49985 -25.30513 -23.93014 -23.26193 -22.82284 -22.18650 -20.86506 -19.29726 -18.98943 -18.68984 -18.38623 -17.98500 -17.25171 -16.94290 -16.81937 -16.77483 -16.47707 -16.03995 -15.94904 -15.71909 -15.25893 -15.02643 -14.88944 -14.38822 -14.26057 -14.21025 -14.08402 -13.98388 -13.84077 -13.60333 -13.31114 -13.02900 -12.66079 -12.52696 -12.32458 -12.16852 -12.03406 -11.87634 -11.69370 -11.31827 -11.15735 -10.69616 -10.63396 -10.46563 -9.91941 -9.11645 -8.73189 -5.02832 -0.02319 0.16353 0.42431 0.54432 1.20084 1.53362 1.89626 1.93834 2.22093 2.54545 2.88860 3.08893 3.20850 3.32026 3.39101 3.44791 3.63946 3.71403 3.75034 3.88517 3.90427 3.95231 4.07037 4.17401 4.22766 4.24621 4.25364 4.31448 4.48907 4.51077 4.55507 4.57318 4.64314 4.69955 4.72669 4.77317 4.95034 5.00737 5.02842 5.09096 5.19792 5.38485 5.47294 5.50374 5.64265 5.85890 5.97763 6.20385 6.37838 6.49359 6.98428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.537 6.537 2 C -0.063 4.063 3 Si 0.680 3.320 4 C -0.162 4.162 5 C 0.150 3.850 6 N -0.511 5.511 7 C 0.391 3.609 8 N -0.707 5.707 9 C 0.137 3.863 10 H 0.124 0.876 11 C -0.147 4.147 12 C -0.106 4.106 13 H 0.108 0.892 14 C 0.072 3.928 15 O -0.312 6.312 16 C 0.130 3.870 17 C -0.211 4.211 18 C -0.080 4.080 19 C -0.160 4.160 20 C -0.080 4.080 21 C -0.153 4.153 22 C -0.139 4.139 23 C -0.021 4.021 24 F -0.134 7.134 25 C -0.037 4.037 26 H 0.381 0.619 27 H 0.078 0.922 28 H -0.258 1.258 29 H -0.251 1.251 30 H 0.164 0.836 31 H 0.412 0.588 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.126 0.874 37 H 0.125 0.875 38 H 0.124 0.876 39 H 0.130 0.870 40 H 0.130 0.870 41 H 0.088 0.912 42 H 0.083 0.917 43 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.841 -0.421 -1.859 3.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.345 6.345 2 C -0.173 4.173 3 Si 0.581 3.419 4 C -0.167 4.167 5 C -0.007 4.007 6 N -0.227 5.227 7 C 0.152 3.848 8 N -0.338 5.338 9 C 0.032 3.968 10 H 0.142 0.858 11 C -0.186 4.186 12 C -0.125 4.125 13 H 0.126 0.874 14 C -0.004 4.004 15 O -0.226 6.226 16 C 0.084 3.916 17 C -0.230 4.230 18 C -0.099 4.099 19 C -0.178 4.178 20 C -0.098 4.098 21 C -0.172 4.172 22 C -0.177 4.177 23 C -0.047 4.047 24 F -0.113 7.113 25 C -0.063 4.063 26 H 0.229 0.771 27 H 0.096 0.904 28 H -0.183 1.183 29 H -0.175 1.175 30 H 0.180 0.820 31 H 0.249 0.751 32 H 0.096 0.904 33 H 0.103 0.897 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.144 0.856 37 H 0.142 0.858 38 H 0.142 0.858 39 H 0.148 0.852 40 H 0.148 0.852 41 H 0.106 0.894 42 H 0.102 0.898 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 3.274 0.837 -0.621 3.436 hybrid contribution -1.754 -1.607 -1.073 2.609 sum 1.521 -0.770 -1.693 2.403 Atomic orbital electron populations 1.86598 1.17828 1.80162 1.49880 1.24572 0.84444 1.10843 0.97481 0.95148 0.91536 0.74428 0.80782 1.19815 1.04642 0.93710 0.98548 1.22333 0.91850 0.99369 0.87124 1.67301 1.25225 1.07261 1.22950 1.18451 0.90468 0.88998 0.86843 1.44581 1.58660 1.11891 1.18713 1.22480 0.92190 0.95602 0.86514 0.85849 1.23605 0.96595 1.03300 0.95110 1.22349 0.99078 1.00062 0.91048 0.87370 1.22814 1.00469 0.92008 0.85076 1.86080 1.85400 1.36450 1.14670 1.19034 0.95747 0.91770 0.85021 1.21271 1.08799 0.93853 0.99056 1.20991 0.96860 0.99950 0.92060 1.21117 1.03653 0.93807 0.99217 1.21027 0.97250 0.95229 0.96329 1.20492 1.05647 1.00099 0.90971 1.23402 1.00610 0.99364 0.94339 1.17975 1.08865 0.79465 0.98431 1.91488 1.93765 1.31082 1.94954 1.21260 0.95272 0.94502 0.95282 0.77087 0.90389 1.18266 1.17533 0.81951 0.75069 0.90358 0.89744 0.91871 0.91709 0.85606 0.85752 0.85799 0.85247 0.85158 0.89351 0.89808 0.83443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.29 12.82 -35.23 -0.45 -0.74 16 2 C -0.06 0.06 2.81 36.01 0.10 0.16 16 3 Si 0.68 -1.22 29.88 -169.99 -5.08 -6.30 16 4 C -0.16 -0.14 5.39 -104.47 -0.56 -0.70 16 5 C 0.15 0.14 9.84 -17.57 -0.17 -0.03 16 6 N -0.51 -1.14 9.13 -12.36 -0.11 -1.25 16 7 C 0.39 0.79 7.49 -154.86 -1.16 -0.37 16 8 N -0.71 -0.08 5.51 -53.06 -0.29 -0.37 16 9 C 0.14 -0.11 4.27 -67.12 -0.29 -0.40 16 10 H 0.12 -0.01 7.40 -51.93 -0.38 -0.39 16 11 C -0.15 0.07 7.43 -25.92 -0.19 -0.12 16 12 C -0.11 0.15 4.01 -89.80 -0.36 -0.21 16 13 H 0.11 -0.13 8.14 -51.93 -0.42 -0.55 16 14 C 0.07 -0.04 4.58 37.15 0.17 0.13 16 15 O -0.31 -0.75 10.14 -19.41 -0.20 -0.94 16 16 C 0.13 0.34 6.69 -39.22 -0.26 0.08 16 17 C -0.21 -0.32 9.04 -39.43 -0.36 -0.68 16 18 C -0.08 -0.09 10.04 -39.60 -0.40 -0.49 16 19 C -0.16 -0.17 10.04 -39.56 -0.40 -0.57 16 20 C -0.08 -0.10 10.04 -39.61 -0.40 -0.49 16 21 C -0.15 -0.34 9.99 -39.43 -0.39 -0.73 16 22 C -0.14 0.34 7.39 -25.91 -0.19 0.15 16 23 C -0.02 -0.05 7.35 -39.09 -0.29 -0.33 16 24 F -0.13 -0.33 16.65 2.25 0.04 -0.30 16 25 C -0.04 -0.05 9.82 -39.26 -0.39 -0.44 16 26 H 0.38 -1.31 8.74 45.56 0.40 -0.91 16 27 H 0.08 -0.21 7.96 -51.93 -0.41 -0.62 16 28 H -0.26 -0.07 7.11 56.52 0.40 0.34 16 29 H -0.25 -0.31 7.05 56.52 0.40 0.09 16 30 H 0.16 -0.19 4.87 -52.48 -0.26 -0.45 16 31 H 0.41 -0.44 8.20 -40.82 -0.33 -0.77 16 32 H 0.08 0.04 8.14 -51.93 -0.42 -0.38 16 33 H 0.08 -0.02 7.90 -51.93 -0.41 -0.43 16 34 H 0.06 -0.07 7.35 -51.93 -0.38 -0.45 16 35 H 0.06 -0.09 7.67 -51.93 -0.40 -0.48 16 36 H 0.13 -0.03 6.30 -52.49 -0.33 -0.36 16 37 H 0.12 -0.11 8.06 -52.49 -0.42 -0.53 16 38 H 0.12 -0.09 8.06 -52.49 -0.42 -0.52 16 39 H 0.13 -0.12 8.06 -52.48 -0.42 -0.54 16 40 H 0.13 0.16 8.06 -52.49 -0.42 -0.27 16 41 H 0.09 -0.28 8.08 -51.93 -0.42 -0.70 16 42 H 0.08 -0.24 8.14 -51.93 -0.42 -0.66 16 43 H 0.15 0.03 8.06 -52.49 -0.42 -0.39 16 LS Contribution 363.67 15.07 5.48 5.48 Total: 0.00 -6.78 363.67 -11.66 -18.44 By element: Atomic # 1 Polarization: -3.47 SS G_CDS: -5.51 Total: -8.98 kcal Atomic # 6 Polarization: 0.49 SS G_CDS: -5.53 Total: -5.04 kcal Atomic # 7 Polarization: -1.22 SS G_CDS: -0.41 Total: -1.62 kcal Atomic # 8 Polarization: -1.03 SS G_CDS: -0.65 Total: -1.68 kcal Atomic # 9 Polarization: -0.33 SS G_CDS: 0.04 Total: -0.30 kcal Atomic # 14 Polarization: -1.22 SS G_CDS: -5.08 Total: -6.30 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -6.78 -11.66 -18.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16536078_17656566.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.650 kcal (2) G-P(sol) polarization free energy of solvation -6.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds