Wall clock time and date at job start Mon Mar 8 2021 07:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42894 * 1 3 3 Si 1.86297 * 109.47271 * 2 1 4 4 C 1.50704 * 109.47001 * 120.00395 * 2 1 3 5 5 C 1.37983 * 120.32381 * 244.99798 * 4 2 1 6 6 N 1.32004 * 120.90205 * 179.97438 * 5 4 2 7 7 C 1.32337 * 121.64815 * 0.02562 * 6 5 4 8 8 N 1.39142 * 119.72251 * 179.97438 * 7 6 5 9 9 C 1.46499 * 119.99716 * 359.71922 * 8 7 6 10 10 H 1.08998 * 112.85361 * 336.47085 * 9 8 7 11 11 C 1.53778 * 113.61557 * 107.77973 * 9 8 7 12 12 C 1.53785 * 87.08457 * 139.98112 * 11 9 8 13 13 H 1.09000 * 113.69324 * 89.12487 * 12 11 9 14 14 C 1.52995 * 113.61616 * 220.02571 * 12 11 9 15 15 O 1.42910 * 109.46794 * 272.49378 * 14 12 11 16 16 C 1.35896 * 117.00013 * 180.02562 * 15 14 12 17 17 C 1.38733 * 120.05480 * 359.72692 * 16 15 14 18 18 C 1.38153 * 119.94240 * 179.70065 * 17 16 15 19 19 C 1.38265 * 120.05402 * 0.59401 * 18 17 16 20 20 C 1.38267 * 120.10956 * 359.68039 * 19 18 17 21 21 C 1.38145 * 120.05903 * 0.02562 * 20 19 18 22 22 C 1.53786 * 113.61394 * 205.27945 * 9 8 7 23 23 C 1.39347 * 120.56074 * 0.24807 * 7 6 5 24 24 F 1.35103 * 120.46885 * 179.72211 * 23 7 6 25 25 C 1.38442 * 119.05603 * 359.50149 * 23 7 6 26 26 H 0.96700 * 114.00264 * 60.00014 * 1 2 3 27 27 H 1.09003 * 109.47138 * 239.99790 * 2 1 3 28 28 H 1.48495 * 109.99873 * 298.68318 * 3 2 1 29 29 H 1.48498 * 109.99843 * 60.00297 * 3 2 1 30 30 H 1.08004 * 119.54995 * 0.02562 * 5 4 2 31 31 H 0.97001 * 120.00434 * 180.02562 * 8 7 6 32 32 H 1.08997 * 113.61721 * 254.52733 * 11 9 8 33 33 H 1.09004 * 113.61436 * 25.43627 * 11 9 8 34 34 H 1.09000 * 109.47385 * 32.48954 * 14 12 11 35 35 H 1.09005 * 109.47361 * 152.49686 * 14 12 11 36 36 H 1.07994 * 120.03116 * 359.97438 * 17 16 15 37 37 H 1.07994 * 119.96930 * 180.31852 * 18 17 16 38 38 H 1.07995 * 119.94325 * 179.70173 * 19 18 17 39 39 H 1.08004 * 119.96656 * 180.02562 * 20 19 18 40 40 H 1.07999 * 120.02562 * 179.97438 * 21 20 19 41 41 H 1.08999 * 113.61272 * 334.56869 * 22 9 8 42 42 H 1.09001 * 113.61514 * 105.47520 * 22 9 8 43 43 H 1.08001 * 120.75836 * 180.23885 * 25 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7105 1.2305 5 6 2.6381 -0.0203 2.1937 6 7 3.0829 -0.6311 3.2761 7 6 2.8720 -1.9213 3.4815 8 7 3.3596 -2.5247 4.6366 9 6 4.1082 -1.7334 5.6163 10 1 4.5654 -0.8444 5.1819 11 6 3.3262 -1.4561 6.9110 12 6 4.6436 -1.6998 7.6660 13 1 5.2478 -0.8017 7.7939 14 6 4.4686 -2.4883 8.9654 15 8 4.1825 -1.5853 10.0355 16 6 3.9982 -2.1277 11.2678 17 6 4.0853 -3.5013 11.4425 18 6 3.9038 -4.0497 12.6975 19 6 3.6233 -3.2319 13.7765 20 6 3.5304 -1.8632 13.6039 21 6 3.7171 -1.3094 12.3522 22 6 5.0756 -2.5679 6.4722 23 6 2.1707 -2.6820 2.5481 24 9 1.9613 -4.0002 2.7571 25 6 1.6876 -2.0667 1.4059 26 1 -0.3934 0.4417 -0.7650 27 1 1.7923 -0.5139 -0.8900 28 1 1.5878 2.4585 -1.2242 29 1 1.5615 2.4678 1.2085 30 1 2.8293 1.0344 2.0607 31 1 3.2077 -3.4702 4.7912 32 1 2.9610 -0.4322 6.9898 33 1 2.5571 -2.1985 7.1242 34 1 3.6445 -3.1931 8.8546 35 1 5.3862 -3.0338 9.1859 36 1 4.2993 -4.1409 10.5991 37 1 3.9766 -5.1184 12.8349 38 1 3.4769 -3.6630 14.7558 39 1 3.3116 -1.2266 14.4485 40 1 3.6440 -0.2403 12.2179 41 1 4.7848 -3.6142 6.5653 42 1 6.1226 -2.4414 6.1967 43 1 1.1372 -2.6292 0.6663 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_16536078_17656566.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:17:01 Heat of formation + Delta-G solvation = -7.719913 kcal Electronic energy + Delta-G solvation = -26673.456080 eV Core-core repulsion = 22601.370580 eV Total energy + Delta-G solvation = -4072.085499 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 331.137 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -49.97212 -41.54425 -41.15485 -40.10262 -38.26883 -37.91566 -35.67606 -33.30102 -32.08679 -31.62781 -30.88277 -29.00822 -26.78252 -26.47450 -25.35608 -23.96559 -23.32000 -22.86594 -22.19619 -20.81245 -19.34570 -19.01477 -18.68022 -18.40295 -18.06965 -17.27401 -16.98147 -16.91175 -16.80873 -16.48453 -16.04614 -15.94298 -15.71725 -15.28244 -15.05674 -14.95854 -14.40680 -14.30245 -14.24268 -14.10177 -14.05147 -13.85598 -13.49064 -13.32210 -13.01031 -12.64439 -12.53793 -12.30511 -12.15014 -12.07044 -11.85036 -11.67665 -11.28324 -11.15078 -10.73905 -10.71655 -10.42901 -9.98752 -9.19788 -8.77429 -4.90163 -0.10651 0.09047 0.35763 0.46154 1.30330 1.62374 1.93298 1.97476 2.21547 2.48377 2.81614 3.01163 3.22686 3.38070 3.44781 3.52107 3.65541 3.77177 3.81330 3.85336 3.88754 3.94973 4.06290 4.22097 4.27161 4.28189 4.35144 4.36844 4.46764 4.47788 4.53334 4.67580 4.69914 4.70668 4.74807 4.81422 4.98298 5.02093 5.04466 5.05602 5.22332 5.32415 5.45173 5.47071 5.58267 5.83541 5.97160 6.18744 6.43965 6.61135 6.93969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.560 6.560 2 C -0.071 4.071 3 Si 0.761 3.239 4 C -0.167 4.167 5 C 0.145 3.855 6 N -0.526 5.526 7 C 0.381 3.619 8 N -0.702 5.702 9 C 0.136 3.864 10 H 0.116 0.884 11 C -0.148 4.148 12 C -0.101 4.101 13 H 0.105 0.895 14 C 0.068 3.932 15 O -0.330 6.330 16 C 0.111 3.889 17 C -0.219 4.219 18 C -0.089 4.089 19 C -0.169 4.169 20 C -0.087 4.087 21 C -0.174 4.174 22 C -0.124 4.124 23 C -0.037 4.037 24 F -0.139 7.139 25 C -0.041 4.041 26 H 0.397 0.603 27 H 0.101 0.899 28 H -0.282 1.282 29 H -0.294 1.294 30 H 0.179 0.821 31 H 0.417 0.583 32 H 0.063 0.937 33 H 0.081 0.919 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.141 0.859 37 H 0.144 0.856 38 H 0.142 0.858 39 H 0.147 0.853 40 H 0.131 0.869 41 H 0.101 0.899 42 H 0.093 0.907 43 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.358 -1.136 -2.125 4.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.371 6.371 2 C -0.180 4.180 3 Si 0.666 3.334 4 C -0.172 4.172 5 C -0.012 4.012 6 N -0.243 5.243 7 C 0.142 3.858 8 N -0.335 5.335 9 C 0.031 3.969 10 H 0.133 0.867 11 C -0.187 4.187 12 C -0.120 4.120 13 H 0.123 0.877 14 C -0.006 4.006 15 O -0.244 6.244 16 C 0.066 3.934 17 C -0.238 4.238 18 C -0.106 4.106 19 C -0.187 4.187 20 C -0.105 4.105 21 C -0.192 4.192 22 C -0.162 4.162 23 C -0.063 4.063 24 F -0.118 7.118 25 C -0.067 4.067 26 H 0.247 0.753 27 H 0.119 0.881 28 H -0.209 1.209 29 H -0.222 1.222 30 H 0.196 0.804 31 H 0.255 0.745 32 H 0.081 0.919 33 H 0.100 0.900 34 H 0.087 0.913 35 H 0.094 0.906 36 H 0.159 0.841 37 H 0.162 0.838 38 H 0.160 0.840 39 H 0.165 0.835 40 H 0.149 0.851 41 H 0.119 0.881 42 H 0.112 0.888 43 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 3.800 0.098 -0.897 3.906 hybrid contribution -1.969 -1.341 -0.982 2.577 sum 1.831 -1.243 -1.880 2.904 Atomic orbital electron populations 1.86549 1.18583 1.80718 1.51220 1.24778 0.83999 1.11663 0.97564 0.94227 0.90228 0.72033 0.76956 1.20025 1.04441 0.93629 0.99144 1.22659 0.91582 1.00094 0.86876 1.67332 1.25893 1.07479 1.23628 1.18618 0.90650 0.89101 0.87395 1.44639 1.58362 1.12171 1.18291 1.22482 0.92460 0.95808 0.86130 0.86653 1.23586 0.97030 1.02312 0.95801 1.22295 0.98409 1.00234 0.91042 0.87675 1.22967 1.01147 0.91962 0.84553 1.86055 1.85604 1.37644 1.15135 1.19270 0.96442 0.92474 0.85225 1.21503 1.08679 0.93647 0.99930 1.21318 0.96347 1.01087 0.91897 1.21430 1.03262 0.93839 1.00145 1.21303 0.96841 0.95826 0.96501 1.20712 1.06471 1.00421 0.91631 1.23337 1.00667 0.99544 0.92623 1.18110 1.09743 0.79402 0.99076 1.91466 1.93897 1.31390 1.95049 1.21461 0.95097 0.94927 0.95259 0.75265 0.88071 1.20885 1.22169 0.80449 0.74492 0.91861 0.89996 0.91331 0.90646 0.84135 0.83839 0.84050 0.83522 0.85080 0.88094 0.88836 0.82519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.42 12.82 -148.98 -1.91 -2.33 16 2 C -0.07 0.17 2.81 71.24 0.20 0.37 16 3 Si 0.76 -2.90 29.88 68.60 2.05 -0.85 16 4 C -0.17 -0.30 5.39 -19.76 -0.11 -0.40 16 5 C 0.14 0.34 9.84 84.61 0.83 1.18 16 6 N -0.53 -2.77 9.13 -193.03 -1.76 -4.53 16 7 C 0.38 1.84 7.49 133.09 1.00 2.84 16 8 N -0.70 -0.56 5.51 -321.79 -1.77 -2.33 16 9 C 0.14 -0.15 4.27 45.52 0.19 0.04 16 10 H 0.12 0.08 7.40 -2.39 -0.02 0.07 16 11 C -0.15 0.00 7.43 31.12 0.23 0.23 16 12 C -0.10 0.24 4.01 -10.26 -0.04 0.20 16 13 H 0.11 -0.17 8.14 -2.39 -0.02 -0.19 16 14 C 0.07 -0.06 4.58 71.98 0.33 0.27 16 15 O -0.33 -1.90 10.14 -92.38 -0.94 -2.84 16 16 C 0.11 0.68 6.69 22.51 0.15 0.83 16 17 C -0.22 -0.68 9.04 22.37 0.20 -0.48 16 18 C -0.09 -0.15 10.04 22.26 0.22 0.07 16 19 C -0.17 -0.29 10.04 22.28 0.22 -0.07 16 20 C -0.09 -0.23 10.04 22.25 0.22 0.00 16 21 C -0.17 -0.95 9.99 22.36 0.22 -0.73 16 22 C -0.12 0.67 7.39 31.13 0.23 0.90 16 23 C -0.04 -0.19 7.35 22.59 0.17 -0.02 16 24 F -0.14 -0.79 16.65 44.97 0.75 -0.04 16 25 C -0.04 -0.13 9.82 22.48 0.22 0.09 16 26 H 0.40 -2.91 8.74 -74.06 -0.65 -3.56 16 27 H 0.10 -0.70 7.96 -2.39 -0.02 -0.71 16 28 H -0.28 -0.07 7.11 99.48 0.71 0.63 16 29 H -0.29 -0.99 7.05 99.48 0.70 -0.29 16 30 H 0.18 -0.36 4.87 -2.91 -0.01 -0.37 16 31 H 0.42 -0.74 8.20 -92.71 -0.76 -1.50 16 32 H 0.06 0.19 8.14 -2.39 -0.02 0.17 16 33 H 0.08 0.04 7.90 -2.39 -0.02 0.02 16 34 H 0.07 -0.14 7.35 -2.39 -0.02 -0.16 16 35 H 0.08 -0.23 7.67 -2.38 -0.02 -0.25 16 36 H 0.14 -0.14 6.30 -2.91 -0.02 -0.16 16 37 H 0.14 -0.42 8.06 -2.91 -0.02 -0.44 16 38 H 0.14 -0.35 8.06 -2.91 -0.02 -0.38 16 39 H 0.15 -0.29 8.06 -2.91 -0.02 -0.31 16 40 H 0.13 0.53 8.06 -2.91 -0.02 0.50 16 41 H 0.10 -0.76 8.08 -2.39 -0.02 -0.78 16 42 H 0.09 -0.63 8.14 -2.39 -0.02 -0.65 16 43 H 0.16 0.08 8.06 -2.91 -0.02 0.05 16 Total: 0.00 -16.51 363.67 0.60 -15.91 By element: Atomic # 1 Polarization: -7.99 SS G_CDS: -0.32 Total: -8.31 kcal Atomic # 6 Polarization: 0.81 SS G_CDS: 4.50 Total: 5.31 kcal Atomic # 7 Polarization: -3.33 SS G_CDS: -3.53 Total: -6.86 kcal Atomic # 8 Polarization: -2.32 SS G_CDS: -2.85 Total: -5.16 kcal Atomic # 9 Polarization: -0.79 SS G_CDS: 0.75 Total: -0.04 kcal Atomic # 14 Polarization: -2.90 SS G_CDS: 2.05 Total: -0.85 kcal Total: -16.51 0.60 -15.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16536078_17656566.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.193 kcal (2) G-P(sol) polarization free energy of solvation -16.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds