Wall clock time and date at job start Mon Mar 8 2021 08:04:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42908 * 1 3 3 Si 1.86293 * 109.47138 * 2 1 4 4 C 1.50702 * 109.46813 * 240.00013 * 2 1 3 5 5 C 1.38609 * 120.71970 * 299.99981 * 4 2 1 6 6 N 1.32279 * 119.19420 * 180.02562 * 5 4 2 7 7 C 1.32490 * 120.74029 * 0.02562 * 6 5 4 8 8 N 1.38408 * 119.21405 * 179.97438 * 7 6 5 9 9 C 1.46499 * 119.99788 * 179.72008 * 8 7 6 10 10 H 1.08999 * 109.47228 * 325.27453 * 9 8 7 11 11 C 1.52999 * 109.47341 * 85.27614 * 9 8 7 12 12 C 1.52997 * 109.47188 * 180.02562 * 11 9 8 13 13 C 1.53003 * 109.46860 * 299.99296 * 12 11 9 14 14 H 1.08999 * 109.47459 * 300.00495 * 13 12 11 15 15 N 1.46907 * 109.47053 * 179.97438 * 13 12 11 16 16 H 1.00896 * 109.48055 * 299.99201 * 15 13 12 17 17 C 1.46939 * 109.47744 * 179.97438 * 15 13 12 18 18 C 1.53073 * 109.37640 * 179.97438 * 17 15 13 19 19 O 1.43034 * 109.24983 * 57.64248 * 18 17 15 20 20 C 1.43036 * 113.65278 * 302.09747 * 19 18 17 21 21 C 1.46945 * 109.47163 * 60.00764 * 15 13 12 22 22 C 1.53003 * 109.46811 * 60.01012 * 13 12 11 23 23 C 1.53001 * 109.47193 * 205.27574 * 9 8 7 24 24 N 1.32496 * 121.56933 * 0.26944 * 7 6 5 25 25 C 1.32280 * 120.73454 * 359.44648 * 24 7 6 26 26 H 0.96698 * 113.99460 * 300.00461 * 1 2 3 27 27 H 1.09002 * 109.46919 * 120.00005 * 2 1 3 28 28 H 1.48506 * 109.99800 * 178.68255 * 3 2 1 29 29 H 1.48499 * 110.00282 * 299.99712 * 3 2 1 30 30 H 1.08000 * 120.40144 * 0.02562 * 5 4 2 31 31 H 0.97001 * 120.00363 * 0.02562 * 8 7 6 32 32 H 1.09001 * 109.46823 * 300.00095 * 11 9 8 33 33 H 1.08999 * 109.47091 * 59.99755 * 11 9 8 34 34 H 1.09002 * 109.46693 * 180.02562 * 12 11 9 35 35 H 1.08993 * 109.47585 * 60.00233 * 12 11 9 36 36 H 1.09003 * 109.48563 * 299.96574 * 17 15 13 37 37 H 1.09003 * 109.48491 * 60.02689 * 17 15 13 38 38 H 1.09005 * 109.50676 * 297.71491 * 18 17 15 39 39 H 1.08999 * 109.50845 * 177.57776 * 18 17 15 40 40 H 1.08991 * 109.50899 * 297.97176 * 20 19 18 41 41 H 1.08999 * 109.54245 * 177.85326 * 20 19 18 42 42 H 1.09003 * 109.48793 * 299.97518 * 21 15 13 43 43 H 1.08997 * 109.49061 * 60.03733 * 21 15 13 44 44 H 1.09000 * 109.47291 * 180.02562 * 22 13 12 45 45 H 1.08999 * 109.47531 * 59.99527 * 22 13 12 46 46 H 1.08999 * 109.46935 * 300.00059 * 23 9 8 47 47 H 1.09004 * 109.47138 * 59.99988 * 23 9 8 48 48 H 1.08003 * 120.39866 * 180.29440 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 1.6056 -2.0372 -1.4646 6 7 2.0633 -2.6314 -2.5542 7 6 2.8248 -1.9729 -3.4156 8 7 3.2870 -2.6257 -4.5452 9 6 4.1250 -1.9122 -5.5120 10 1 3.8071 -0.8713 -5.5700 11 6 5.5867 -1.9750 -5.0642 12 6 6.4618 -1.2293 -6.0737 13 6 6.3218 -1.8823 -7.4502 14 1 6.6398 -2.9233 -7.3927 15 7 7.1616 -1.1661 -8.4197 16 1 6.8668 -0.2026 -8.4731 17 6 7.0278 -1.7934 -9.7416 18 6 7.9032 -1.0450 -10.7500 19 8 9.2600 -1.0577 -10.2974 20 6 9.4382 -0.4782 -9.0019 21 6 8.5655 -1.2258 -7.9899 22 6 4.8602 -1.8195 -7.8982 23 6 3.9849 -2.5656 -6.8884 24 7 3.1592 -0.7060 -3.2185 25 6 2.7302 -0.0517 -2.1519 26 1 -0.3932 0.4418 0.7650 27 1 1.7924 -0.5138 0.8900 28 1 3.5347 1.7702 0.0321 29 1 1.5616 2.4678 -1.2085 30 1 0.9856 -2.5793 -0.7659 31 1 3.0523 -3.5542 -4.6989 32 1 5.6865 -1.5095 -4.0837 33 1 5.9045 -3.0160 -5.0062 34 1 7.5032 -1.2745 -5.7548 35 1 6.1439 -0.1884 -6.1312 36 1 7.3472 -2.8340 -9.6843 37 1 5.9866 -1.7493 -10.0613 38 1 7.5582 -0.0147 -10.8372 39 1 7.8389 -1.5346 -11.7217 40 1 9.1458 0.5714 -9.0293 41 1 10.4849 -0.5570 -8.7081 42 1 8.6658 -0.7603 -7.0093 43 1 8.8845 -2.2665 -7.9330 44 1 4.7603 -2.2851 -8.8787 45 1 4.5422 -0.7785 -7.9558 46 1 4.3028 -3.6066 -6.8304 47 1 2.9436 -2.5209 -7.2075 48 1 3.0022 0.9823 -1.9990 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_16607402_12175864.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:04:44 Heat of formation + Delta-G solvation = 120.361464 kcal Electronic energy + Delta-G solvation = -28000.249523 eV Core-core repulsion = 24176.730028 eV Total energy + Delta-G solvation = -3823.519495 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 322.192 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -45.59522 -43.05596 -41.64118 -39.91669 -38.67559 -36.98775 -35.63909 -35.43141 -33.94068 -33.66645 -32.12319 -30.06439 -28.19371 -27.42770 -26.82169 -25.91108 -25.37812 -25.12529 -23.82058 -23.09962 -21.14913 -20.61952 -20.21058 -19.91869 -19.81061 -19.19720 -19.12162 -18.75249 -18.20174 -17.99607 -17.48562 -17.43117 -17.13662 -16.84393 -16.57500 -16.36207 -16.18221 -16.12327 -16.06412 -15.81555 -15.55909 -15.29532 -14.96849 -14.91154 -14.83140 -14.64602 -14.45026 -14.16379 -13.98688 -13.93860 -13.61820 -13.18311 -13.05199 -13.03983 -12.72202 -12.63780 -12.36239 -11.40235 -10.85235 -10.14496 -5.75621 -1.63522 -0.86712 -0.76734 0.26825 0.30467 0.46881 0.50653 0.60463 0.65734 0.83287 0.93380 1.11107 1.19833 1.28376 1.45958 1.51852 1.65514 1.75792 1.82531 1.86654 1.94051 2.03484 2.10634 2.15058 2.25783 2.29435 2.39695 2.41759 2.45783 2.53846 2.55123 2.60447 2.70440 2.71620 2.74194 2.86779 2.91337 2.94339 3.07937 3.18928 3.29091 3.32690 3.55906 3.67873 3.69153 3.82978 3.85915 4.26662 4.74502 4.95887 5.34334 5.86504 6.29874 Molecular weight = 322.19amu Principal moments of inertia in cm(-1) A = 0.024763 B = 0.002565 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.460119 B =10914.912223 C =11591.259161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.547 6.547 2 C -0.055 4.055 3 Si 0.685 3.315 4 C -0.234 4.234 5 C 0.229 3.771 6 N -0.562 5.562 7 C 0.562 3.438 8 N -0.697 5.697 9 C 0.159 3.841 10 H 0.097 0.903 11 C -0.129 4.129 12 C -0.136 4.136 13 C 0.023 3.977 14 H 0.140 0.860 15 N -0.383 5.383 16 H 0.421 0.579 17 C -0.048 4.048 18 C 0.037 3.963 19 O -0.357 6.357 20 C 0.037 3.963 21 C -0.048 4.048 22 C -0.135 4.135 23 C -0.127 4.127 24 N -0.565 5.565 25 C 0.191 3.809 26 H 0.388 0.612 27 H 0.080 0.920 28 H -0.253 1.253 29 H -0.249 1.249 30 H 0.177 0.823 31 H 0.417 0.583 32 H 0.090 0.910 33 H 0.076 0.924 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.139 0.861 37 H 0.144 0.856 38 H 0.081 0.919 39 H 0.142 0.858 40 H 0.081 0.919 41 H 0.142 0.858 42 H 0.144 0.856 43 H 0.139 0.861 44 H 0.095 0.905 45 H 0.092 0.908 46 H 0.083 0.917 47 H 0.094 0.906 48 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.101 0.894 -12.297 16.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.354 6.354 2 C -0.167 4.167 3 Si 0.586 3.414 4 C -0.242 4.242 5 C 0.061 3.939 6 N -0.283 5.283 7 C 0.206 3.794 8 N -0.335 5.335 9 C 0.053 3.947 10 H 0.115 0.885 11 C -0.168 4.168 12 C -0.174 4.174 13 C -0.078 4.078 14 H 0.157 0.843 15 N 0.039 4.961 16 H 0.257 0.743 17 C -0.170 4.170 18 C -0.041 4.041 19 O -0.274 6.274 20 C -0.040 4.040 21 C -0.169 4.169 22 C -0.173 4.173 23 C -0.165 4.165 24 N -0.287 5.287 25 C 0.024 3.976 26 H 0.236 0.764 27 H 0.097 0.903 28 H -0.178 1.178 29 H -0.173 1.173 30 H 0.194 0.806 31 H 0.255 0.745 32 H 0.109 0.891 33 H 0.095 0.905 34 H 0.110 0.890 35 H 0.109 0.891 36 H 0.157 0.843 37 H 0.162 0.838 38 H 0.099 0.901 39 H 0.160 0.840 40 H 0.099 0.901 41 H 0.160 0.840 42 H 0.162 0.838 43 H 0.157 0.843 44 H 0.113 0.887 45 H 0.110 0.890 46 H 0.101 0.899 47 H 0.113 0.887 48 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 12.371 0.448 -14.338 18.943 hybrid contribution -0.758 -0.100 0.864 1.153 sum 11.613 0.347 -13.475 17.792 Atomic orbital electron populations 1.86468 1.16904 1.81942 1.50134 1.24335 0.86004 1.10123 0.96280 0.94456 0.80625 0.78067 0.88225 1.20832 1.05633 0.97496 1.00219 1.22935 0.89644 0.90578 0.90720 1.67992 1.15506 1.39317 1.05471 1.19290 0.87348 0.85613 0.87174 1.43934 1.54795 1.14654 1.20097 1.20931 0.89314 0.98034 0.86465 0.88464 1.21963 0.94055 1.01451 0.99373 1.22097 1.03032 1.01414 0.90905 1.23787 0.93362 1.00627 0.90043 0.84264 1.45680 1.15818 1.18942 1.15650 0.74318 1.24721 1.07755 1.03116 0.81377 1.23267 0.81285 1.01315 0.98197 1.88403 1.25289 1.81152 1.32531 1.23270 1.02898 0.96514 0.81365 1.24728 0.78364 1.09555 1.04302 1.22072 0.89881 1.04273 1.01076 1.21788 1.01590 1.00236 0.92930 1.67817 1.28924 1.08500 1.23461 1.22612 0.89652 0.98439 0.86891 0.76356 0.90256 1.17801 1.17340 0.80630 0.74455 0.89145 0.90503 0.89049 0.89065 0.84277 0.83833 0.90084 0.84014 0.90083 0.84025 0.83831 0.84290 0.88694 0.88982 0.89863 0.88736 0.82337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 4.94 12.76 -35.23 -0.45 4.49 16 2 C -0.06 0.54 2.84 36.01 0.10 0.64 16 3 Si 0.69 -7.25 29.87 -169.99 -5.08 -12.33 16 4 C -0.23 1.86 5.43 -104.35 -0.57 1.30 16 5 C 0.23 -1.72 10.92 -17.22 -0.19 -1.90 16 6 N -0.56 3.97 10.46 -13.93 -0.15 3.82 16 7 C 0.56 -5.03 8.41 -322.81 -2.71 -7.74 16 8 N -0.70 9.30 5.22 -55.80 -0.29 9.01 16 9 C 0.16 -2.83 2.45 -67.93 -0.17 -3.00 16 10 H 0.10 -1.59 7.50 -51.93 -0.39 -1.98 16 11 C -0.13 2.53 5.51 -26.73 -0.15 2.38 16 12 C -0.14 3.38 4.89 -26.73 -0.13 3.25 16 13 C 0.02 -0.64 1.62 -67.71 -0.11 -0.75 16 14 H 0.14 -3.92 8.14 -51.93 -0.42 -4.34 16 15 N -0.38 11.48 0.24 -226.44 -0.05 11.43 16 16 H 0.42 -13.36 8.32 -39.29 -0.33 -13.69 16 17 C -0.05 1.38 4.93 -3.76 -0.02 1.36 16 18 C 0.04 -0.93 6.96 37.20 0.26 -0.67 16 19 O -0.36 7.73 10.84 -35.23 -0.38 7.34 16 20 C 0.04 -0.93 6.97 37.22 0.26 -0.67 16 21 C -0.05 1.36 4.94 -3.74 -0.02 1.34 16 22 C -0.13 3.46 4.90 -26.70 -0.13 3.33 16 23 C -0.13 2.69 5.39 -26.70 -0.14 2.55 16 24 N -0.56 4.97 9.20 -13.93 -0.13 4.84 16 25 C 0.19 -1.55 9.92 -17.23 -0.17 -1.72 16 26 H 0.39 -5.22 8.74 45.56 0.40 -4.83 16 27 H 0.08 -0.91 7.96 -51.93 -0.41 -1.32 16 28 H -0.25 2.21 7.11 56.52 0.40 2.61 16 29 H -0.25 1.90 7.11 56.52 0.40 2.30 16 30 H 0.18 -1.60 8.06 -52.49 -0.42 -2.03 16 31 H 0.42 -5.83 8.72 -40.82 -0.36 -6.19 16 32 H 0.09 -1.44 8.14 -51.93 -0.42 -1.87 16 33 H 0.08 -1.49 8.14 -51.93 -0.42 -1.91 16 34 H 0.09 -2.35 6.29 -51.93 -0.33 -2.68 16 35 H 0.09 -2.27 8.14 -51.93 -0.42 -2.70 16 36 H 0.14 -3.97 8.14 -51.93 -0.42 -4.39 16 37 H 0.14 -4.31 6.15 -51.93 -0.32 -4.63 16 38 H 0.08 -2.12 8.14 -51.93 -0.42 -2.54 16 39 H 0.14 -3.46 8.14 -51.93 -0.42 -3.88 16 40 H 0.08 -2.11 8.14 -51.93 -0.42 -2.54 16 41 H 0.14 -3.44 8.14 -51.93 -0.42 -3.86 16 42 H 0.14 -4.25 6.15 -51.93 -0.32 -4.57 16 43 H 0.14 -3.93 8.14 -51.93 -0.42 -4.36 16 44 H 0.09 -2.55 6.29 -51.93 -0.33 -2.88 16 45 H 0.09 -2.38 8.14 -51.93 -0.42 -2.80 16 46 H 0.08 -1.78 8.14 -51.93 -0.42 -2.20 16 47 H 0.09 -1.82 8.14 -51.93 -0.42 -2.24 16 48 H 0.16 -1.48 5.04 -52.48 -0.26 -1.75 16 LS Contribution 363.95 15.07 5.48 5.48 Total: 1.00 -34.77 363.95 -12.69 -47.46 By element: Atomic # 1 Polarization: -73.48 SS G_CDS: -7.76 Total: -81.24 kcal Atomic # 6 Polarization: 3.58 SS G_CDS: -3.88 Total: -0.30 kcal Atomic # 7 Polarization: 29.71 SS G_CDS: -0.62 Total: 29.09 kcal Atomic # 8 Polarization: 12.67 SS G_CDS: -0.83 Total: 11.83 kcal Atomic # 14 Polarization: -7.25 SS G_CDS: -5.08 Total: -12.33 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.77 -12.69 -47.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16607402_12175864.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.821 kcal (2) G-P(sol) polarization free energy of solvation -34.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds