Wall clock time and date at job start Mon Mar 8 2021 08:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42908 * 1 3 3 Si 1.86293 * 109.47138 * 2 1 4 4 C 1.50702 * 109.46813 * 240.00013 * 2 1 3 5 5 C 1.38609 * 120.71970 * 299.99981 * 4 2 1 6 6 N 1.32279 * 119.19420 * 180.02562 * 5 4 2 7 7 C 1.32490 * 120.74029 * 0.02562 * 6 5 4 8 8 N 1.38408 * 119.21405 * 179.97438 * 7 6 5 9 9 C 1.46499 * 119.99788 * 179.72008 * 8 7 6 10 10 H 1.08999 * 109.47228 * 325.27453 * 9 8 7 11 11 C 1.52999 * 109.47341 * 85.27614 * 9 8 7 12 12 C 1.52997 * 109.47188 * 180.02562 * 11 9 8 13 13 C 1.53003 * 109.46860 * 299.99296 * 12 11 9 14 14 H 1.08999 * 109.47459 * 300.00495 * 13 12 11 15 15 N 1.46907 * 109.47053 * 179.97438 * 13 12 11 16 16 H 1.00896 * 109.48055 * 299.99201 * 15 13 12 17 17 C 1.46939 * 109.47744 * 179.97438 * 15 13 12 18 18 C 1.53073 * 109.37640 * 179.97438 * 17 15 13 19 19 O 1.43034 * 109.24983 * 57.64248 * 18 17 15 20 20 C 1.43036 * 113.65278 * 302.09747 * 19 18 17 21 21 C 1.46945 * 109.47163 * 60.00764 * 15 13 12 22 22 C 1.53003 * 109.46811 * 60.01012 * 13 12 11 23 23 C 1.53001 * 109.47193 * 205.27574 * 9 8 7 24 24 N 1.32496 * 121.56933 * 0.26944 * 7 6 5 25 25 C 1.32280 * 120.73454 * 359.44648 * 24 7 6 26 26 H 0.96698 * 113.99460 * 300.00461 * 1 2 3 27 27 H 1.09002 * 109.46919 * 120.00005 * 2 1 3 28 28 H 1.48506 * 109.99800 * 178.68255 * 3 2 1 29 29 H 1.48499 * 110.00282 * 299.99712 * 3 2 1 30 30 H 1.08000 * 120.40144 * 0.02562 * 5 4 2 31 31 H 0.97001 * 120.00363 * 0.02562 * 8 7 6 32 32 H 1.09001 * 109.46823 * 300.00095 * 11 9 8 33 33 H 1.08999 * 109.47091 * 59.99755 * 11 9 8 34 34 H 1.09002 * 109.46693 * 180.02562 * 12 11 9 35 35 H 1.08993 * 109.47585 * 60.00233 * 12 11 9 36 36 H 1.09003 * 109.48563 * 299.96574 * 17 15 13 37 37 H 1.09003 * 109.48491 * 60.02689 * 17 15 13 38 38 H 1.09005 * 109.50676 * 297.71491 * 18 17 15 39 39 H 1.08999 * 109.50845 * 177.57776 * 18 17 15 40 40 H 1.08991 * 109.50899 * 297.97176 * 20 19 18 41 41 H 1.08999 * 109.54245 * 177.85326 * 20 19 18 42 42 H 1.09003 * 109.48793 * 299.97518 * 21 15 13 43 43 H 1.08997 * 109.49061 * 60.03733 * 21 15 13 44 44 H 1.09000 * 109.47291 * 180.02562 * 22 13 12 45 45 H 1.08999 * 109.47531 * 59.99527 * 22 13 12 46 46 H 1.08999 * 109.46935 * 300.00059 * 23 9 8 47 47 H 1.09004 * 109.47138 * 59.99988 * 23 9 8 48 48 H 1.08003 * 120.39866 * 180.29440 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 1.6056 -2.0372 -1.4646 6 7 2.0633 -2.6314 -2.5542 7 6 2.8248 -1.9729 -3.4156 8 7 3.2870 -2.6257 -4.5452 9 6 4.1250 -1.9122 -5.5120 10 1 3.8071 -0.8713 -5.5700 11 6 5.5867 -1.9750 -5.0642 12 6 6.4618 -1.2293 -6.0737 13 6 6.3218 -1.8823 -7.4502 14 1 6.6398 -2.9233 -7.3927 15 7 7.1616 -1.1661 -8.4197 16 1 6.8668 -0.2026 -8.4731 17 6 7.0278 -1.7934 -9.7416 18 6 7.9032 -1.0450 -10.7500 19 8 9.2600 -1.0577 -10.2974 20 6 9.4382 -0.4782 -9.0019 21 6 8.5655 -1.2258 -7.9899 22 6 4.8602 -1.8195 -7.8982 23 6 3.9849 -2.5656 -6.8884 24 7 3.1592 -0.7060 -3.2185 25 6 2.7302 -0.0517 -2.1519 26 1 -0.3932 0.4418 0.7650 27 1 1.7924 -0.5138 0.8900 28 1 3.5347 1.7702 0.0321 29 1 1.5616 2.4678 -1.2085 30 1 0.9856 -2.5793 -0.7659 31 1 3.0523 -3.5542 -4.6989 32 1 5.6865 -1.5095 -4.0837 33 1 5.9045 -3.0160 -5.0062 34 1 7.5032 -1.2745 -5.7548 35 1 6.1439 -0.1884 -6.1312 36 1 7.3472 -2.8340 -9.6843 37 1 5.9866 -1.7493 -10.0613 38 1 7.5582 -0.0147 -10.8372 39 1 7.8389 -1.5346 -11.7217 40 1 9.1458 0.5714 -9.0293 41 1 10.4849 -0.5570 -8.7081 42 1 8.6658 -0.7603 -7.0093 43 1 8.8845 -2.2665 -7.9330 44 1 4.7603 -2.2851 -8.8787 45 1 4.5422 -0.7785 -7.9558 46 1 4.3028 -3.6066 -6.8304 47 1 2.9436 -2.5209 -7.2075 48 1 3.0022 0.9823 -1.9990 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_16607402_12175864.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:04:43 Heat of formation + Delta-G solvation = 96.797171 kcal Electronic energy + Delta-G solvation = -28001.271348 eV Core-core repulsion = 24176.730028 eV Total energy + Delta-G solvation = -3824.541319 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 322.192 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.41463 -42.27164 -39.91578 -38.33078 -37.70698 -35.69040 -34.92273 -33.31216 -32.83139 -31.81745 -30.52165 -28.24026 -26.50086 -26.13466 -26.01043 -23.81732 -23.58929 -23.44025 -22.79276 -21.43760 -19.62389 -19.01297 -18.81457 -18.31209 -18.22721 -17.80586 -17.02010 -16.90112 -16.67203 -16.48898 -16.32887 -16.11220 -15.90745 -15.44329 -15.30480 -15.18298 -14.88881 -14.38204 -14.23555 -14.09489 -14.00641 -13.93638 -13.39922 -13.24777 -12.99898 -12.86484 -12.79711 -12.69224 -12.37692 -12.34749 -12.08076 -12.05684 -11.90926 -11.81331 -11.54365 -11.22800 -11.02802 -10.64333 -10.10536 -9.24553 -4.94987 -0.16887 -0.07551 0.60042 1.27290 1.61112 1.66339 1.88504 2.44520 2.51609 2.59223 2.63110 2.88303 2.92276 3.10894 3.32299 3.34812 3.36511 3.42023 3.50720 3.63673 3.66488 3.75965 3.83551 3.83727 3.86242 4.00798 4.04555 4.08343 4.08743 4.18376 4.25617 4.30729 4.44886 4.49479 4.50614 4.53334 4.61003 4.63602 4.66005 4.71657 4.77779 4.85248 4.93272 4.96138 4.98818 5.16100 5.23637 5.61581 5.85832 5.88461 6.22009 6.88318 7.07787 Molecular weight = 322.19amu Principal moments of inertia in cm(-1) A = 0.024763 B = 0.002565 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.460119 B =10914.912223 C =11591.259161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.568 6.568 2 C -0.060 4.060 3 Si 0.764 3.236 4 C -0.252 4.252 5 C 0.216 3.784 6 N -0.588 5.588 7 C 0.549 3.451 8 N -0.689 5.689 9 C 0.150 3.850 10 H 0.080 0.920 11 C -0.125 4.125 12 C -0.133 4.133 13 C 0.045 3.955 14 H 0.154 0.846 15 N -0.368 5.368 16 H 0.434 0.566 17 C -0.036 4.036 18 C 0.029 3.971 19 O -0.401 6.401 20 C 0.030 3.970 21 C -0.036 4.036 22 C -0.132 4.132 23 C -0.122 4.122 24 N -0.566 5.566 25 C 0.178 3.822 26 H 0.405 0.595 27 H 0.097 0.903 28 H -0.278 1.278 29 H -0.292 1.292 30 H 0.184 0.816 31 H 0.419 0.581 32 H 0.050 0.950 33 H 0.077 0.923 34 H 0.109 0.891 35 H 0.096 0.904 36 H 0.143 0.857 37 H 0.165 0.835 38 H 0.088 0.912 39 H 0.126 0.874 40 H 0.088 0.912 41 H 0.125 0.875 42 H 0.159 0.841 43 H 0.143 0.857 44 H 0.119 0.881 45 H 0.099 0.901 46 H 0.090 0.910 47 H 0.074 0.926 48 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.702 0.765 -13.180 17.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.378 6.378 2 C -0.171 4.171 3 Si 0.669 3.331 4 C -0.260 4.260 5 C 0.048 3.952 6 N -0.310 5.310 7 C 0.192 3.808 8 N -0.326 5.326 9 C 0.045 3.955 10 H 0.098 0.902 11 C -0.165 4.165 12 C -0.171 4.171 13 C -0.057 4.057 14 H 0.172 0.828 15 N 0.053 4.947 16 H 0.272 0.728 17 C -0.158 4.158 18 C -0.048 4.048 19 O -0.320 6.320 20 C -0.047 4.047 21 C -0.158 4.158 22 C -0.170 4.170 23 C -0.161 4.161 24 N -0.289 5.289 25 C 0.011 3.989 26 H 0.257 0.743 27 H 0.115 0.885 28 H -0.205 1.205 29 H -0.220 1.220 30 H 0.201 0.799 31 H 0.257 0.743 32 H 0.068 0.932 33 H 0.096 0.904 34 H 0.127 0.873 35 H 0.114 0.886 36 H 0.161 0.839 37 H 0.182 0.818 38 H 0.106 0.894 39 H 0.144 0.856 40 H 0.106 0.894 41 H 0.143 0.857 42 H 0.177 0.823 43 H 0.161 0.839 44 H 0.137 0.863 45 H 0.117 0.883 46 H 0.108 0.892 47 H 0.092 0.908 48 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 12.975 0.318 -15.233 20.013 hybrid contribution -0.919 -0.054 1.047 1.395 sum 12.056 0.263 -14.186 18.619 Atomic orbital electron populations 1.86424 1.17311 1.82470 1.51586 1.24480 0.85810 1.10679 0.96125 0.93676 0.77857 0.75744 0.85826 1.21062 1.06141 0.97612 1.01173 1.23162 0.89936 0.91049 0.91025 1.68023 1.16674 1.40077 1.06256 1.19726 0.87194 0.85806 0.88046 1.44351 1.54218 1.14821 1.19230 1.21305 0.89658 0.97091 0.87411 0.90187 1.21819 0.93715 1.01874 0.99067 1.22014 1.02723 1.01143 0.91181 1.23394 0.92542 1.01221 0.88581 0.82789 1.45390 1.14900 1.19670 1.14699 0.72753 1.24606 1.07919 1.02645 0.80590 1.23324 0.80601 1.02202 0.98691 1.88324 1.27545 1.81780 1.34307 1.23303 1.02940 0.97383 0.81077 1.24582 0.78154 1.09444 1.03619 1.22058 0.90035 1.04324 1.00606 1.21729 1.01687 1.01027 0.91643 1.67864 1.29036 1.08648 1.23342 1.22824 0.89953 0.98813 0.87335 0.74300 0.88524 1.20504 1.21961 0.79879 0.74295 0.93158 0.90437 0.87320 0.88551 0.83873 0.81795 0.89394 0.85567 0.89406 0.85701 0.82288 0.83933 0.86277 0.88289 0.89189 0.90760 0.81944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.57 9.40 12.76 -148.98 -1.90 7.49 16 2 C -0.06 1.07 2.84 71.24 0.20 1.27 16 3 Si 0.76 -14.81 29.87 68.60 2.05 -12.76 16 4 C -0.25 3.31 5.43 -19.69 -0.11 3.20 16 5 C 0.22 -2.58 10.92 84.71 0.93 -1.66 16 6 N -0.59 6.39 10.46 -197.98 -2.07 4.32 16 7 C 0.55 -8.04 8.41 261.49 2.20 -5.84 16 8 N -0.69 16.46 5.22 -330.44 -1.73 14.73 16 9 C 0.15 -5.05 2.45 44.99 0.11 -4.94 16 10 H 0.08 -2.41 7.50 -2.39 -0.02 -2.43 16 11 C -0.13 4.71 5.51 30.59 0.17 4.88 16 12 C -0.13 6.62 4.89 30.59 0.15 6.77 16 13 C 0.04 -2.53 1.62 44.92 0.07 -2.46 16 14 H 0.15 -9.03 8.14 -2.39 -0.02 -9.04 16 15 N -0.37 22.48 0.24 -870.33 -0.21 22.27 16 16 H 0.43 -28.22 8.32 -89.70 -0.75 -28.97 16 17 C -0.04 2.11 4.93 86.32 0.43 2.53 16 18 C 0.03 -1.42 6.96 72.01 0.50 -0.92 16 19 O -0.40 16.69 10.84 -148.98 -1.62 15.07 16 20 C 0.03 -1.46 6.97 72.02 0.50 -0.96 16 21 C -0.04 2.08 4.94 86.33 0.43 2.51 16 22 C -0.13 6.95 4.90 30.61 0.15 7.10 16 23 C -0.12 5.10 5.39 30.61 0.17 5.27 16 24 N -0.57 8.05 9.20 -197.98 -1.82 6.23 16 25 C 0.18 -2.33 9.92 84.71 0.84 -1.49 16 26 H 0.41 -10.55 8.74 -74.06 -0.65 -11.20 16 27 H 0.10 -2.11 7.96 -2.39 -0.02 -2.13 16 28 H -0.28 4.30 7.11 99.48 0.71 5.01 16 29 H -0.29 3.62 7.11 99.48 0.71 4.33 16 30 H 0.18 -2.82 8.06 -2.91 -0.02 -2.84 16 31 H 0.42 -10.59 8.72 -92.71 -0.81 -11.40 16 32 H 0.05 -1.44 8.14 -2.39 -0.02 -1.46 16 33 H 0.08 -2.92 8.14 -2.39 -0.02 -2.94 16 34 H 0.11 -5.72 6.29 -2.39 -0.01 -5.74 16 35 H 0.10 -4.83 8.14 -2.39 -0.02 -4.85 16 36 H 0.14 -8.35 8.14 -2.39 -0.02 -8.37 16 37 H 0.16 -10.21 6.15 -2.39 -0.01 -10.23 16 38 H 0.09 -4.55 8.14 -2.38 -0.02 -4.57 16 39 H 0.13 -5.93 8.14 -2.39 -0.02 -5.95 16 40 H 0.09 -4.50 8.14 -2.39 -0.02 -4.52 16 41 H 0.13 -5.78 8.14 -2.39 -0.02 -5.80 16 42 H 0.16 -9.61 6.15 -2.39 -0.01 -9.62 16 43 H 0.14 -8.19 8.14 -2.39 -0.02 -8.21 16 44 H 0.12 -6.71 6.29 -2.39 -0.02 -6.72 16 45 H 0.10 -5.23 8.14 -2.39 -0.02 -5.25 16 46 H 0.09 -3.84 8.14 -2.39 -0.02 -3.86 16 47 H 0.07 -2.74 8.14 -2.38 -0.02 -2.76 16 48 H 0.16 -2.51 5.04 -2.91 -0.01 -2.53 16 Total: 1.00 -77.67 363.95 -1.74 -79.41 By element: Atomic # 1 Polarization: -150.86 SS G_CDS: -1.17 Total: -152.04 kcal Atomic # 6 Polarization: 8.54 SS G_CDS: 6.73 Total: 15.27 kcal Atomic # 7 Polarization: 53.38 SS G_CDS: -5.83 Total: 47.55 kcal Atomic # 8 Polarization: 26.08 SS G_CDS: -3.52 Total: 22.57 kcal Atomic # 14 Polarization: -14.81 SS G_CDS: 2.05 Total: -12.76 kcal Total: -77.67 -1.74 -79.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16607402_12175864.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.204 kcal (2) G-P(sol) polarization free energy of solvation -77.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds