Wall clock time and date at job start Mon Mar 8 2021 08:04:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42892 * 1 3 3 Si 1.86305 * 109.47233 * 2 1 4 4 C 1.50703 * 109.47485 * 120.00214 * 2 1 3 5 5 C 1.33325 * 125.95308 * 64.99588 * 4 2 1 6 6 N 1.32113 * 114.58155 * 180.02562 * 5 4 2 7 7 C 1.29688 * 116.86520 * 0.02562 * 6 5 4 8 8 N 1.38620 * 124.94867 * 179.97438 * 7 6 5 9 9 C 1.46492 * 119.99913 * 0.02562 * 8 7 6 10 10 H 1.09002 * 109.47696 * 34.99932 * 9 8 7 11 11 C 1.53002 * 109.47204 * 155.00276 * 9 8 7 12 12 C 1.53000 * 109.47233 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.47060 * 299.99657 * 12 11 9 14 14 H 1.09002 * 109.47153 * 300.00319 * 13 12 11 15 15 N 1.46894 * 109.47515 * 180.02562 * 13 12 11 16 16 H 1.00900 * 109.47770 * 299.98452 * 15 13 12 17 17 C 1.46943 * 109.48285 * 179.97438 * 15 13 12 18 18 C 1.53069 * 109.37889 * 179.97438 * 17 15 13 19 19 O 1.43033 * 109.25076 * 57.64178 * 18 17 15 20 20 C 1.43040 * 113.65185 * 302.09795 * 19 18 17 21 21 C 1.46943 * 109.47917 * 60.00045 * 15 13 12 22 22 C 1.52999 * 109.47317 * 59.99960 * 13 12 11 23 23 C 1.52997 * 109.47244 * 275.00028 * 9 8 7 24 24 S 1.70958 * 110.10190 * 0.23874 * 7 6 5 25 25 H 0.96698 * 113.99939 * 60.00424 * 1 2 3 26 26 H 1.09002 * 109.47442 * 240.00042 * 2 1 3 27 27 H 1.48501 * 109.99785 * 60.00000 * 3 2 1 28 28 H 1.48497 * 110.00158 * 181.31994 * 3 2 1 29 29 H 1.08005 * 122.71003 * 359.97438 * 5 4 2 30 30 H 0.96998 * 119.99733 * 180.02562 * 8 7 6 31 31 H 1.08992 * 109.47063 * 59.99836 * 11 9 8 32 32 H 1.09004 * 109.46733 * 299.99549 * 11 9 8 33 33 H 1.09002 * 109.47398 * 59.99826 * 12 11 9 34 34 H 1.09001 * 109.47194 * 180.02562 * 12 11 9 35 35 H 1.09000 * 109.48337 * 299.96399 * 17 15 13 36 36 H 1.09003 * 109.48203 * 60.01971 * 17 15 13 37 37 H 1.09000 * 109.50870 * 297.71085 * 18 17 15 38 38 H 1.09000 * 109.50965 * 177.57874 * 18 17 15 39 39 H 1.08996 * 109.50556 * 297.96587 * 20 19 18 40 40 H 1.09005 * 109.50389 * 177.83040 * 20 19 18 41 41 H 1.08998 * 109.48598 * 299.98615 * 21 15 13 42 42 H 1.09001 * 109.48639 * 60.01578 * 21 15 13 43 43 H 1.09000 * 109.47486 * 180.02562 * 22 13 12 44 44 H 1.09002 * 109.46716 * 60.00091 * 22 13 12 45 45 H 1.09002 * 109.47153 * 300.00242 * 23 9 8 46 46 H 1.09001 * 109.47289 * 60.00326 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7105 1.2304 5 6 1.7622 -2.0026 1.5122 6 7 2.2974 -2.3902 2.6561 7 6 2.9101 -1.4844 3.3533 8 7 3.5288 -1.7055 4.5739 9 6 3.5207 -3.0448 5.1673 10 1 3.5862 -3.7928 4.3771 11 6 4.7171 -3.1924 6.1096 12 6 4.7090 -4.5915 6.7288 13 6 3.4124 -4.7935 7.5154 14 1 3.3467 -4.0459 8.3059 15 7 3.4048 -6.1365 8.1105 16 1 3.4656 -6.8289 7.3791 17 6 2.1599 -6.3305 8.8666 18 6 2.1542 -7.7307 9.4850 19 8 3.3052 -7.8818 10.3206 20 6 4.5434 -7.6784 9.6340 21 6 4.5538 -6.2779 9.0156 22 6 2.2160 -4.6459 6.5733 23 6 2.2241 -3.2463 5.9540 24 16 2.8372 0.0235 2.5511 25 1 -0.3933 0.4416 -0.7651 26 1 1.7923 -0.5138 -0.8900 27 1 1.5614 2.4679 1.2085 28 1 3.5345 1.7703 -0.0321 29 1 1.2300 -2.6777 0.8584 30 1 3.9671 -0.9733 5.0351 31 1 4.6516 -2.4445 6.8997 32 1 5.6409 -3.0489 5.5490 33 1 4.7747 -5.3391 5.9383 34 1 5.5611 -4.6964 7.4004 35 1 2.0945 -5.5832 9.6573 36 1 1.3071 -6.2261 8.1957 37 1 2.1789 -8.4787 8.6926 38 1 1.2514 -7.8614 10.0817 39 1 4.6500 -8.4247 8.8468 40 1 5.3698 -7.7712 10.3388 41 1 5.4777 -6.1343 8.4555 42 1 4.4880 -5.5303 9.8061 43 1 1.2922 -4.7894 7.1337 44 1 2.2817 -5.3936 5.7828 45 1 2.1586 -2.4984 6.7442 46 1 1.3717 -3.1412 5.2828 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_16607402_15704118.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:04:52 Heat of formation + Delta-G solvation = 86.182032 kcal Electronic energy + Delta-G solvation = -26275.539622 eV Core-core repulsion = 22605.116153 eV Total energy + Delta-G solvation = -3670.423469 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 327.153 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.40287 -40.98234 -39.76322 -38.22933 -37.64029 -35.48105 -33.30209 -31.96211 -31.75250 -30.56382 -28.27550 -26.59559 -26.08837 -24.78779 -23.70011 -23.51852 -23.28849 -21.59106 -20.70521 -19.72756 -18.91583 -18.48655 -18.24821 -17.80685 -17.62838 -17.05252 -16.99775 -16.51570 -16.15296 -16.14186 -15.85970 -15.53132 -15.30769 -15.23481 -14.75676 -14.40164 -14.30434 -14.20492 -13.98708 -13.92938 -13.37760 -13.02070 -12.98498 -12.84122 -12.78675 -12.63715 -12.58478 -12.34828 -12.22852 -11.96445 -11.89140 -11.52820 -11.12803 -11.02171 -10.83444 -10.45815 -10.29546 -8.91051 -5.22162 -0.23061 -0.06885 0.48013 0.61314 1.19265 1.50297 1.79926 1.84469 1.98648 2.45371 2.52965 2.63980 2.92633 3.11608 3.33464 3.36335 3.41641 3.51454 3.62784 3.67912 3.76256 3.83357 3.86840 3.93889 4.01923 4.07620 4.08829 4.18711 4.26824 4.31544 4.42072 4.47774 4.51269 4.54930 4.58635 4.64016 4.64296 4.72728 4.78387 4.86606 4.90585 4.95086 4.98113 5.13655 5.23285 5.73164 5.89138 5.98537 6.77057 6.84760 Molecular weight = 327.15amu Principal moments of inertia in cm(-1) A = 0.035537 B = 0.002401 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.714641 B =11658.674956 C =12112.409666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.563 6.563 2 C -0.020 4.020 3 Si 0.742 3.258 4 C -0.274 4.274 5 C 0.111 3.889 6 N -0.559 5.559 7 C 0.332 3.668 8 N -0.683 5.683 9 C 0.150 3.850 10 H 0.079 0.921 11 C -0.122 4.122 12 C -0.133 4.133 13 C 0.044 3.956 14 H 0.154 0.846 15 N -0.368 5.368 16 H 0.434 0.566 17 C -0.036 4.036 18 C 0.030 3.970 19 O -0.401 6.401 20 C 0.028 3.972 21 C -0.036 4.036 22 C -0.133 4.133 23 C -0.127 4.127 24 S 0.037 5.963 25 H 0.405 0.595 26 H 0.105 0.895 27 H -0.284 1.284 28 H -0.277 1.277 29 H 0.189 0.811 30 H 0.422 0.578 31 H 0.090 0.910 32 H 0.077 0.923 33 H 0.099 0.901 34 H 0.119 0.881 35 H 0.142 0.858 36 H 0.159 0.841 37 H 0.088 0.912 38 H 0.125 0.875 39 H 0.088 0.912 40 H 0.126 0.874 41 H 0.165 0.835 42 H 0.143 0.857 43 H 0.107 0.893 44 H 0.095 0.905 45 H 0.078 0.922 46 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.373 -13.149 13.458 19.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.374 6.374 2 C -0.134 4.134 3 Si 0.647 3.353 4 C -0.396 4.396 5 C -0.039 4.039 6 N -0.285 5.285 7 C -0.040 4.040 8 N -0.323 5.323 9 C 0.044 3.956 10 H 0.097 0.903 11 C -0.161 4.161 12 C -0.171 4.171 13 C -0.058 4.058 14 H 0.172 0.828 15 N 0.053 4.947 16 H 0.272 0.728 17 C -0.158 4.158 18 C -0.047 4.047 19 O -0.320 6.320 20 C -0.049 4.049 21 C -0.157 4.157 22 C -0.171 4.171 23 C -0.167 4.167 24 S 0.286 5.714 25 H 0.256 0.744 26 H 0.123 0.877 27 H -0.211 1.211 28 H -0.203 1.203 29 H 0.205 0.795 30 H 0.261 0.739 31 H 0.109 0.891 32 H 0.096 0.904 33 H 0.117 0.883 34 H 0.137 0.863 35 H 0.161 0.839 36 H 0.177 0.823 37 H 0.106 0.894 38 H 0.143 0.857 39 H 0.106 0.894 40 H 0.144 0.856 41 H 0.183 0.817 42 H 0.161 0.839 43 H 0.125 0.875 44 H 0.114 0.886 45 H 0.097 0.903 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 5.263 -12.437 15.317 20.420 hybrid contribution -0.401 -0.467 -0.967 1.146 sum 4.862 -12.904 14.350 19.901 Atomic orbital electron populations 1.86444 1.17078 1.82286 1.51577 1.23733 0.85677 1.09132 0.94859 0.93990 0.78668 0.76570 0.86075 1.24574 1.14790 0.97180 1.03019 1.21583 0.96548 0.93302 0.92458 1.66460 1.19815 1.33284 1.08931 1.23964 0.95216 0.92078 0.92700 1.44305 1.58533 1.13424 1.15996 1.21361 0.96094 0.82471 0.95693 0.90256 1.21730 0.96976 0.98485 0.98894 1.22054 0.95912 0.97890 1.01207 1.23396 0.99164 0.83045 1.00145 0.82815 1.45390 1.15110 1.16993 1.17178 0.72762 1.24565 0.87408 1.02672 1.01146 1.23296 0.90889 0.93831 0.96695 1.88326 1.14762 1.91528 1.37356 1.23332 0.88121 0.93789 0.99613 1.24610 0.90991 1.02777 0.97347 1.22017 0.97677 0.98021 0.99373 1.21844 0.97382 0.97701 0.99732 1.84417 1.56690 1.13359 1.16975 0.74351 0.87723 1.21104 1.20269 0.79461 0.73899 0.89098 0.90407 0.88275 0.86256 0.83945 0.82346 0.89405 0.85731 0.89393 0.85565 0.81730 0.83886 0.87481 0.88618 0.90326 0.93215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 8.23 12.86 -148.98 -1.92 6.32 16 2 C -0.02 0.31 2.98 71.24 0.21 0.52 16 3 Si 0.74 -10.76 31.07 68.60 2.13 -8.63 16 4 C -0.27 3.11 5.76 24.58 0.14 3.25 16 5 C 0.11 -1.40 11.24 83.54 0.94 -0.46 16 6 N -0.56 8.04 9.90 -202.03 -2.00 6.04 16 7 C 0.33 -5.71 8.06 179.32 1.45 -4.26 16 8 N -0.68 18.29 5.23 -330.41 -1.73 16.56 16 9 C 0.15 -5.28 2.58 44.99 0.12 -5.17 16 10 H 0.08 -2.48 7.77 -2.39 -0.02 -2.50 16 11 C -0.12 5.31 5.39 30.60 0.16 5.48 16 12 C -0.13 7.10 4.90 30.59 0.15 7.25 16 13 C 0.04 -2.55 1.61 44.92 0.07 -2.48 16 14 H 0.15 -9.11 8.14 -2.39 -0.02 -9.13 16 15 N -0.37 22.60 0.24 -870.42 -0.21 22.39 16 16 H 0.43 -28.31 8.32 -89.69 -0.75 -29.06 16 17 C -0.04 2.08 4.93 86.32 0.43 2.51 16 18 C 0.03 -1.46 6.96 72.01 0.50 -0.96 16 19 O -0.40 16.74 10.84 -148.98 -1.62 15.13 16 20 C 0.03 -1.40 6.96 72.02 0.50 -0.90 16 21 C -0.04 2.10 4.94 86.33 0.43 2.53 16 22 C -0.13 6.67 4.90 30.61 0.15 6.82 16 23 C -0.13 4.85 5.51 30.61 0.17 5.02 16 24 S 0.04 -0.46 20.59 -56.49 -1.16 -1.62 16 25 H 0.40 -9.86 8.74 -74.06 -0.65 -10.51 16 26 H 0.11 -2.03 7.96 -2.39 -0.02 -2.05 16 27 H -0.28 2.02 7.11 99.48 0.71 2.73 16 28 H -0.28 2.54 7.11 99.48 0.71 3.24 16 29 H 0.19 -2.94 8.06 -2.91 -0.02 -2.96 16 30 H 0.42 -12.58 8.73 -92.71 -0.81 -13.39 16 31 H 0.09 -4.06 8.14 -2.39 -0.02 -4.08 16 32 H 0.08 -3.06 8.14 -2.39 -0.02 -3.08 16 33 H 0.10 -5.33 8.14 -2.39 -0.02 -5.35 16 34 H 0.12 -6.84 6.28 -2.39 -0.01 -6.86 16 35 H 0.14 -8.20 8.14 -2.39 -0.02 -8.22 16 36 H 0.16 -9.55 6.15 -2.39 -0.01 -9.57 16 37 H 0.09 -4.50 8.14 -2.39 -0.02 -4.52 16 38 H 0.12 -5.76 8.14 -2.39 -0.02 -5.78 16 39 H 0.09 -4.57 8.14 -2.39 -0.02 -4.59 16 40 H 0.13 -5.96 8.14 -2.38 -0.02 -5.98 16 41 H 0.17 -10.35 6.15 -2.39 -0.01 -10.36 16 42 H 0.14 -8.41 8.14 -2.39 -0.02 -8.43 16 43 H 0.11 -5.62 6.29 -2.39 -0.02 -5.64 16 44 H 0.10 -4.80 8.14 -2.39 -0.02 -4.82 16 45 H 0.08 -3.03 8.14 -2.39 -0.02 -3.05 16 46 H 0.05 -1.42 8.14 -2.39 -0.02 -1.44 16 Total: 1.00 -77.80 361.96 -2.25 -80.05 By element: Atomic # 1 Polarization: -154.22 SS G_CDS: -1.16 Total: -155.38 kcal Atomic # 6 Polarization: 13.73 SS G_CDS: 5.41 Total: 19.14 kcal Atomic # 7 Polarization: 48.93 SS G_CDS: -3.94 Total: 44.99 kcal Atomic # 8 Polarization: 24.98 SS G_CDS: -3.53 Total: 21.45 kcal Atomic # 14 Polarization: -10.76 SS G_CDS: 2.13 Total: -8.63 kcal Atomic # 16 Polarization: -0.46 SS G_CDS: -1.16 Total: -1.62 kcal Total: -77.80 -2.25 -80.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16607402_15704118.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.235 kcal (2) G-P(sol) polarization free energy of solvation -77.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds