Wall clock time and date at job start Mon Mar 8 2021 08:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86301 * 109.46870 * 2 1 4 4 C 1.50697 * 109.47432 * 120.00275 * 2 1 3 5 5 C 1.37988 * 120.32520 * 245.00278 * 4 2 1 6 6 N 1.32011 * 120.89866 * 180.30297 * 5 4 2 7 7 C 1.32333 * 121.64646 * 359.42528 * 6 5 4 8 8 N 1.39143 * 119.72053 * 180.29769 * 7 6 5 9 9 C 1.46499 * 119.99665 * 0.26893 * 8 7 6 10 10 H 1.09004 * 109.47138 * 325.00199 * 9 8 7 11 11 C 1.53002 * 109.47153 * 85.00503 * 9 8 7 12 12 C 1.53000 * 109.47065 * 180.02562 * 11 9 8 13 13 C 1.53006 * 109.46972 * 299.99593 * 12 11 9 14 14 H 1.08999 * 109.47430 * 300.00496 * 13 12 11 15 15 N 1.46896 * 109.46991 * 180.02562 * 13 12 11 16 16 H 1.00895 * 109.48556 * 300.00233 * 15 13 12 17 17 C 1.46941 * 109.47548 * 179.97438 * 15 13 12 18 18 C 1.53074 * 109.37680 * 179.97438 * 17 15 13 19 19 O 1.43041 * 109.25685 * 57.63040 * 18 17 15 20 20 C 1.43031 * 113.64807 * 302.10455 * 19 18 17 21 21 C 1.46942 * 109.48002 * 60.02326 * 15 13 12 22 22 C 1.53002 * 109.46893 * 60.00302 * 13 12 11 23 23 C 1.53000 * 109.47065 * 299.99641 * 22 13 12 24 24 C 1.39349 * 120.56302 * 0.56551 * 7 6 5 25 25 F 1.35103 * 120.47149 * 179.74404 * 24 7 6 26 26 C 1.38444 * 119.05742 * 359.73072 * 24 7 6 27 27 H 0.96698 * 113.99776 * 299.99432 * 1 2 3 28 28 H 1.09000 * 109.46571 * 240.00110 * 2 1 3 29 29 H 1.48501 * 110.00212 * 300.00134 * 3 2 1 30 30 H 1.48497 * 110.00096 * 61.32372 * 3 2 1 31 31 H 1.08002 * 119.54703 * 0.02562 * 5 4 2 32 32 H 0.96999 * 120.00260 * 180.27344 * 8 7 6 33 33 H 1.09002 * 109.46961 * 299.99956 * 11 9 8 34 34 H 1.08999 * 109.46924 * 59.99954 * 11 9 8 35 35 H 1.09004 * 109.46904 * 179.97438 * 12 11 9 36 36 H 1.08996 * 109.47192 * 59.99354 * 12 11 9 37 37 H 1.08995 * 109.49160 * 299.96066 * 17 15 13 38 38 H 1.09000 * 109.48702 * 60.02546 * 17 15 13 39 39 H 1.09003 * 109.50557 * 297.70371 * 18 17 15 40 40 H 1.09001 * 109.54809 * 177.59135 * 18 17 15 41 41 H 1.09001 * 109.51141 * 297.96286 * 20 19 18 42 42 H 1.09005 * 109.54138 * 177.85569 * 20 19 18 43 43 H 1.09002 * 109.48322 * 299.98136 * 21 15 13 44 44 H 1.08998 * 109.48852 * 60.01256 * 21 15 13 45 45 H 1.09002 * 109.46961 * 179.97438 * 22 13 12 46 46 H 1.08999 * 109.46924 * 59.99884 * 22 13 12 47 47 H 1.08991 * 109.47297 * 300.00192 * 23 22 13 48 48 H 1.09004 * 109.46904 * 180.02562 * 23 22 13 49 49 H 1.07997 * 120.75322 * 180.02562 * 26 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 2.6382 -0.0201 2.1937 6 7 3.0887 -0.6324 3.2730 7 6 2.8736 -1.9215 3.4807 8 7 3.3615 -2.5250 4.6356 9 6 4.1048 -1.7324 5.6182 10 1 4.6984 -0.9777 5.1021 11 6 3.1216 -1.0458 6.5685 12 6 3.8978 -0.2175 7.5943 13 6 4.8244 -1.1350 8.3947 14 1 4.2311 -1.8897 8.9110 15 7 5.5692 -0.3399 9.3800 16 1 6.1185 0.3590 8.9025 17 6 6.4587 -1.2210 10.1491 18 6 7.2341 -0.3901 11.1746 19 8 6.3087 0.2939 12.0243 20 6 5.4041 1.1474 11.3179 21 6 4.6248 0.3187 10.2929 22 6 5.8076 -1.8216 7.4444 23 6 5.0313 -2.6499 6.4186 24 6 2.1673 -2.6810 2.5500 25 9 1.9532 -3.9981 2.7615 26 6 1.6879 -2.0667 1.4057 27 1 -0.3933 0.4416 0.7651 28 1 1.7923 -0.5138 -0.8900 29 1 1.5614 2.4680 -1.2085 30 1 1.5879 2.4585 1.2243 31 1 2.8293 1.0345 2.0607 32 1 3.2096 -3.4705 4.7901 33 1 2.4618 -0.3919 5.9983 34 1 2.5280 -1.8005 7.0845 35 1 3.1974 0.2720 8.2710 36 1 4.4912 0.5370 7.0779 37 1 5.8653 -1.9753 10.6659 38 1 7.1598 -1.7100 9.4729 39 1 7.8584 0.3376 10.6561 40 1 7.8631 -1.0469 11.7755 41 1 5.9658 1.9277 10.8043 42 1 4.7081 1.6034 12.0220 43 1 3.9645 0.9727 9.7233 44 1 4.0318 -0.4361 10.8093 45 1 6.4680 -2.4749 8.0147 46 1 6.4008 -1.0669 6.9281 47 1 4.4381 -3.4045 6.9349 48 1 5.7318 -3.1394 5.7419 49 1 1.1368 -2.6290 0.6666 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_16607402_17656566.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:05:00 Heat of formation + Delta-G solvation = 33.577575 kcal Electronic energy + Delta-G solvation = -30425.122626 eV Core-core repulsion = 26193.811835 eV Total energy + Delta-G solvation = -4231.310792 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 339.187 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -50.00888 -43.36073 -41.48843 -39.80359 -38.39709 -37.70473 -35.53516 -33.32582 -33.24156 -32.02676 -31.73296 -30.20369 -28.12941 -26.42991 -26.04585 -25.08579 -23.67822 -23.49916 -23.21888 -22.67541 -21.32807 -19.43354 -18.90947 -18.58079 -18.40430 -18.15648 -17.76562 -17.68702 -17.06752 -16.97270 -16.74021 -16.35872 -16.22746 -16.04967 -15.92904 -15.57229 -15.53309 -15.19435 -14.70149 -14.41774 -14.36083 -14.18557 -14.03477 -13.91148 -13.84497 -13.49423 -13.30494 -12.93119 -12.82292 -12.75929 -12.66721 -12.55132 -12.27433 -12.09318 -11.93067 -11.85904 -11.44037 -11.13225 -10.99184 -10.78481 -10.72037 -10.58992 -8.80831 -4.93946 -0.13725 0.04920 0.65259 1.27130 1.55591 1.92395 2.00347 2.48556 2.49720 2.56473 2.67280 2.97265 2.99729 3.14868 3.22760 3.38840 3.40227 3.42392 3.56003 3.65512 3.74337 3.80021 3.82097 3.85114 3.93862 3.97932 4.09369 4.12773 4.14619 4.27494 4.34005 4.35731 4.39129 4.47357 4.54364 4.59042 4.60852 4.66992 4.68970 4.71698 4.79858 4.83807 4.93258 4.97494 5.01880 5.05360 5.15558 5.27987 5.40468 5.92150 5.98517 6.13151 6.47003 6.87792 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.018286 B = 0.002511 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.893050 B =11149.979372 C =12131.090025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.552 6.552 2 C -0.076 4.076 3 Si 0.772 3.228 4 C -0.203 4.203 5 C 0.149 3.851 6 N -0.512 5.512 7 C 0.388 3.612 8 N -0.714 5.714 9 C 0.147 3.853 10 H 0.090 0.910 11 C -0.127 4.127 12 C -0.133 4.133 13 C 0.043 3.957 14 H 0.149 0.851 15 N -0.367 5.367 16 H 0.436 0.564 17 C -0.036 4.036 18 C 0.028 3.972 19 O -0.402 6.402 20 C 0.029 3.971 21 C -0.036 4.036 22 C -0.132 4.132 23 C -0.125 4.125 24 C -0.042 4.042 25 F -0.143 7.143 26 C -0.048 4.048 27 H 0.387 0.613 28 H 0.121 0.879 29 H -0.313 1.313 30 H -0.264 1.264 31 H 0.185 0.815 32 H 0.414 0.586 33 H 0.056 0.944 34 H 0.070 0.930 35 H 0.105 0.895 36 H 0.101 0.899 37 H 0.140 0.860 38 H 0.165 0.835 39 H 0.089 0.911 40 H 0.125 0.875 41 H 0.090 0.910 42 H 0.124 0.876 43 H 0.161 0.839 44 H 0.140 0.860 45 H 0.114 0.886 46 H 0.103 0.897 47 H 0.082 0.918 48 H 0.075 0.925 49 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.565 3.197 20.079 23.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.360 6.360 2 C -0.185 4.185 3 Si 0.677 3.323 4 C -0.208 4.208 5 C -0.008 4.008 6 N -0.229 5.229 7 C 0.149 3.851 8 N -0.346 5.346 9 C 0.043 3.957 10 H 0.108 0.892 11 C -0.166 4.166 12 C -0.171 4.171 13 C -0.059 4.059 14 H 0.167 0.833 15 N 0.054 4.946 16 H 0.274 0.726 17 C -0.157 4.157 18 C -0.048 4.048 19 O -0.321 6.321 20 C -0.047 4.047 21 C -0.158 4.158 22 C -0.170 4.170 23 C -0.163 4.163 24 C -0.068 4.068 25 F -0.122 7.122 26 C -0.075 4.075 27 H 0.236 0.764 28 H 0.139 0.861 29 H -0.242 1.242 30 H -0.190 1.190 31 H 0.202 0.798 32 H 0.252 0.748 33 H 0.075 0.925 34 H 0.088 0.912 35 H 0.124 0.876 36 H 0.120 0.880 37 H 0.159 0.841 38 H 0.183 0.817 39 H 0.107 0.893 40 H 0.143 0.857 41 H 0.108 0.892 42 H 0.142 0.858 43 H 0.179 0.821 44 H 0.158 0.842 45 H 0.133 0.867 46 H 0.121 0.879 47 H 0.100 0.900 48 H 0.093 0.907 49 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 12.878 4.020 20.658 24.673 hybrid contribution -2.056 -1.328 -1.030 2.656 sum 10.821 2.691 19.629 22.575 Atomic orbital electron populations 1.86622 1.18757 1.80351 1.50268 1.25126 0.83262 1.12113 0.97963 0.94270 0.89753 0.71266 0.77023 1.20855 1.05720 0.94007 1.00214 1.22726 0.90650 1.00377 0.87057 1.67356 1.25226 1.06857 1.23489 1.18505 0.90203 0.89061 0.87363 1.44745 1.59288 1.12368 1.18228 1.21266 0.92254 0.93839 0.88302 0.89203 1.21834 0.98300 0.99657 0.96824 1.22024 0.99037 0.97890 0.98125 1.23401 0.95572 0.96093 0.90792 0.83342 1.45377 1.16438 1.17440 1.15327 0.72611 1.24582 0.97530 0.95541 0.98078 1.23323 0.91529 0.96792 0.93184 1.88324 1.47960 1.61068 1.34738 1.23308 0.93326 0.92199 0.95899 1.24566 0.94177 1.02655 0.94358 1.22038 0.97205 1.01217 0.96517 1.21720 0.98485 0.98168 0.97943 1.18242 1.09828 0.79439 0.99296 1.91474 1.93861 1.31935 1.94978 1.21458 0.95525 0.95171 0.95301 0.76401 0.86102 1.24168 1.18975 0.79821 0.74849 0.92512 0.91159 0.87631 0.88020 0.84147 0.81744 0.89250 0.85706 0.89239 0.85832 0.82142 0.84202 0.86739 0.87859 0.89966 0.90678 0.83902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 7.36 12.84 -148.98 -1.91 5.44 16 2 C -0.08 1.35 2.82 71.23 0.20 1.55 16 3 Si 0.77 -15.43 29.91 68.60 2.05 -13.38 16 4 C -0.20 3.79 5.36 -19.77 -0.11 3.69 16 5 C 0.15 -3.23 9.84 84.61 0.83 -2.40 16 6 N -0.51 11.21 9.20 -193.03 -1.78 9.43 16 7 C 0.39 -8.11 7.47 133.09 0.99 -7.11 16 8 N -0.71 20.05 5.23 -324.27 -1.69 18.36 16 9 C 0.15 -5.49 2.47 44.99 0.11 -5.38 16 10 H 0.09 -3.16 7.54 -2.38 -0.02 -3.18 16 11 C -0.13 5.12 5.51 30.60 0.17 5.29 16 12 C -0.13 6.94 4.90 30.60 0.15 7.09 16 13 C 0.04 -2.53 1.61 44.92 0.07 -2.46 16 14 H 0.15 -8.80 8.14 -2.39 -0.02 -8.82 16 15 N -0.37 22.90 0.24 -870.38 -0.21 22.69 16 16 H 0.44 -29.06 8.32 -89.70 -0.75 -29.80 16 17 C -0.04 2.11 4.93 86.32 0.43 2.54 16 18 C 0.03 -1.43 6.96 72.01 0.50 -0.93 16 19 O -0.40 17.03 10.84 -148.98 -1.62 15.41 16 20 C 0.03 -1.47 6.96 72.02 0.50 -0.97 16 21 C -0.04 2.09 4.94 86.33 0.43 2.52 16 22 C -0.13 7.17 4.90 30.60 0.15 7.32 16 23 C -0.12 5.46 5.39 30.60 0.17 5.63 16 24 C -0.04 0.67 7.35 22.59 0.17 0.84 16 25 F -0.14 1.95 16.65 44.97 0.75 2.70 16 26 C -0.05 0.76 9.82 22.48 0.22 0.98 16 27 H 0.39 -7.59 8.70 -74.06 -0.64 -8.23 16 28 H 0.12 -2.20 7.96 -2.39 -0.02 -2.21 16 29 H -0.31 2.94 7.11 99.48 0.71 3.65 16 30 H -0.26 4.99 7.01 99.48 0.70 5.69 16 31 H 0.19 -4.88 4.84 -2.91 -0.01 -4.89 16 32 H 0.41 -11.78 8.07 -92.71 -0.75 -12.53 16 33 H 0.06 -1.85 8.14 -2.39 -0.02 -1.86 16 34 H 0.07 -2.76 8.14 -2.39 -0.02 -2.78 16 35 H 0.11 -5.75 6.28 -2.39 -0.01 -5.76 16 36 H 0.10 -5.42 8.14 -2.39 -0.02 -5.44 16 37 H 0.14 -8.26 8.14 -2.39 -0.02 -8.28 16 38 H 0.17 -10.41 6.15 -2.39 -0.01 -10.42 16 39 H 0.09 -4.72 8.14 -2.39 -0.02 -4.74 16 40 H 0.13 -5.94 8.14 -2.39 -0.02 -5.96 16 41 H 0.09 -4.69 8.14 -2.39 -0.02 -4.71 16 42 H 0.12 -5.81 8.14 -2.38 -0.02 -5.82 16 43 H 0.16 -9.91 6.15 -2.39 -0.01 -9.92 16 44 H 0.14 -8.12 8.14 -2.39 -0.02 -8.14 16 45 H 0.11 -6.58 6.29 -2.39 -0.01 -6.60 16 46 H 0.10 -5.73 8.14 -2.39 -0.02 -5.75 16 47 H 0.08 -3.59 8.14 -2.39 -0.02 -3.61 16 48 H 0.07 -2.95 8.14 -2.39 -0.02 -2.97 16 49 H 0.14 -2.14 8.06 -2.91 -0.02 -2.16 16 Total: 1.00 -75.87 374.46 -0.55 -76.42 By element: Atomic # 1 Polarization: -154.14 SS G_CDS: -1.12 Total: -155.26 kcal Atomic # 6 Polarization: 13.21 SS G_CDS: 4.98 Total: 18.19 kcal Atomic # 7 Polarization: 54.16 SS G_CDS: -3.68 Total: 50.48 kcal Atomic # 8 Polarization: 24.38 SS G_CDS: -3.53 Total: 20.86 kcal Atomic # 9 Polarization: 1.95 SS G_CDS: 0.75 Total: 2.70 kcal Atomic # 14 Polarization: -15.43 SS G_CDS: 2.05 Total: -13.38 kcal Total: -75.87 -0.55 -76.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16607402_17656566.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.993 kcal (2) G-P(sol) polarization free energy of solvation -75.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds