Wall clock time and date at job start Mon Mar 8 2021 08:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 H 1.00900 * 109.47175 * 2 1 4 4 C 1.46899 * 109.47298 * 120.00222 * 2 1 3 5 5 C 1.46906 * 109.47129 * 240.00395 * 2 1 3 6 6 C 1.53002 * 109.46837 * 64.99503 * 5 2 1 7 7 H 1.09000 * 112.85372 * 316.19680 * 6 5 2 8 8 C 1.53953 * 113.73908 * 87.40554 * 6 5 2 9 9 C 1.53785 * 87.01765 * 139.94047 * 8 6 5 10 10 H 1.08997 * 113.61701 * 89.23012 * 9 8 6 11 11 N 1.46506 * 113.61303 * 220.04481 * 9 8 6 12 12 C 1.38403 * 119.99857 * 253.86126 * 11 9 8 13 13 N 1.32494 * 119.22167 * 359.73019 * 12 11 9 14 14 C 1.32275 * 120.74020 * 179.71419 * 13 12 11 15 15 C 1.38599 * 119.19667 * 0.55112 * 14 13 12 16 16 C 1.50702 * 120.71971 * 179.70317 * 15 14 13 17 17 O 1.42898 * 109.46963 * 120.02447 * 16 15 14 18 18 Si 1.86300 * 109.47288 * 0.02562 * 16 15 14 19 19 C 1.38604 * 118.56353 * 359.73075 * 15 14 13 20 20 N 1.32274 * 119.19328 * 359.97438 * 19 15 14 21 21 C 1.53782 * 87.17382 * 334.63572 * 9 8 6 22 22 H 1.08997 * 109.47490 * 59.99928 * 1 2 3 23 23 H 1.09003 * 109.46973 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47284 * 299.99478 * 1 2 3 25 25 H 1.09002 * 109.47001 * 180.02562 * 4 2 1 26 26 H 1.08994 * 109.47242 * 299.99984 * 4 2 1 27 27 H 1.08994 * 109.47069 * 60.00261 * 4 2 1 28 28 H 1.08995 * 109.46713 * 305.00102 * 5 2 1 29 29 H 1.08990 * 109.47211 * 184.99573 * 5 2 1 30 30 H 1.08999 * 113.61718 * 25.42118 * 8 6 5 31 31 H 1.08994 * 113.66930 * 254.46372 * 8 6 5 32 32 H 0.97005 * 119.99811 * 74.13916 * 11 9 8 33 33 H 1.08000 * 120.40152 * 180.29964 * 14 13 12 34 34 H 1.09006 * 109.47365 * 240.02219 * 16 15 14 35 35 H 0.96700 * 113.99876 * 300.00011 * 17 16 15 36 36 H 1.48502 * 110.00098 * 58.67493 * 18 16 15 37 37 H 1.48495 * 110.00330 * 179.97438 * 18 16 15 38 38 H 1.07994 * 120.40496 * 180.02562 * 19 15 14 39 39 H 1.08999 * 113.60954 * 139.93918 * 21 9 8 40 40 H 1.08995 * 113.61241 * 270.75565 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 1 1.8053 0.9513 0.0000 4 6 1.9587 -0.6925 1.1994 5 6 1.9587 -0.6924 -1.1995 6 6 1.5538 0.0978 -2.4455 7 1 0.5236 0.4517 -2.4061 8 6 2.5641 1.1895 -2.8425 9 6 2.3122 0.7787 -4.3029 10 1 1.4898 1.3181 -4.7726 11 7 3.5246 0.7617 -5.1253 12 6 3.7425 1.7613 -6.0574 13 7 2.8420 2.7231 -6.1970 14 6 3.0225 3.6962 -7.0746 15 6 4.1642 3.6947 -7.8604 16 6 4.4012 4.7828 -8.8757 17 8 5.6155 5.4687 -8.5641 18 14 2.9805 5.9874 -8.8384 19 6 5.0829 2.6706 -7.6926 20 7 4.8444 1.7310 -6.7926 21 6 1.9135 -0.6057 -3.7649 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 3.0487 -0.6921 1.1996 26 1 1.5954 -0.1788 2.0894 27 1 1.5954 -1.7201 1.1993 28 1 1.5240 -1.6909 -1.2455 29 1 3.0449 -0.7706 -1.1559 30 1 3.5799 0.9892 -2.5016 31 1 2.2301 2.2005 -2.6096 32 1 4.1727 0.0477 -5.0192 33 1 2.2871 4.4800 -7.1804 34 1 4.4778 4.3419 -9.8697 35 1 5.6185 5.8866 -7.6920 36 1 2.8455 6.5717 -7.4799 37 1 3.2025 7.0657 -9.8349 38 1 5.9828 2.6405 -8.2888 39 1 1.0548 -1.0417 -4.2754 40 1 2.7507 -1.2981 -3.6780 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_16607412_12175864.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:05:53 Heat of formation + Delta-G solvation = 163.626137 kcal Electronic energy + Delta-G solvation = -20142.107726 eV Core-core repulsion = 17078.447899 eV Total energy + Delta-G solvation = -3063.659828 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 266.161 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.27594 -41.96556 -39.73885 -38.17008 -35.66317 -34.76714 -32.33544 -29.97684 -29.38845 -26.88532 -26.85503 -25.98413 -25.52963 -23.77286 -22.82540 -20.89843 -19.46118 -19.32256 -18.70712 -18.18576 -17.72511 -17.18522 -16.65130 -16.34931 -16.19526 -15.99795 -15.76470 -15.56592 -14.68491 -14.60619 -14.08470 -13.86234 -13.61177 -13.49814 -13.43282 -13.32670 -13.22404 -13.08515 -13.04824 -12.36396 -12.18115 -11.93827 -11.82097 -11.78288 -11.50088 -11.18137 -10.74695 -10.11997 -9.12948 -4.96512 0.00352 0.05826 1.01903 1.27074 1.53880 1.82514 1.97654 2.72813 2.90723 2.95700 3.11670 3.18321 3.37640 3.39798 3.46414 3.62609 3.67530 3.71795 3.78553 3.85502 3.88170 4.15794 4.18630 4.25059 4.36064 4.37803 4.50446 4.58720 4.67211 4.69245 4.72218 4.74692 4.81417 4.85531 4.88569 4.99132 5.06435 5.11545 5.38610 5.76938 6.01336 6.34750 6.45397 7.22210 Molecular weight = 266.16amu Principal moments of inertia in cm(-1) A = 0.036047 B = 0.003699 C = 0.003551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.584918 B = 7568.027471 C = 7883.057432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.372 5.372 3 H 0.436 0.564 4 C -0.047 4.047 5 C 0.011 3.989 6 C -0.115 4.115 7 H 0.133 0.867 8 C -0.154 4.154 9 C 0.116 3.884 10 H 0.104 0.896 11 N -0.681 5.681 12 C 0.548 3.452 13 N -0.569 5.569 14 C 0.196 3.804 15 C -0.284 4.284 16 C -0.060 4.060 17 O -0.548 6.548 18 Si 0.761 3.239 19 C 0.211 3.789 20 N -0.593 5.593 21 C -0.132 4.132 22 H 0.122 0.878 23 H 0.123 0.877 24 H 0.126 0.874 25 H 0.123 0.877 26 H 0.125 0.875 27 H 0.121 0.879 28 H 0.143 0.857 29 H 0.139 0.861 30 H 0.098 0.902 31 H 0.079 0.921 32 H 0.418 0.582 33 H 0.188 0.812 34 H 0.127 0.873 35 H 0.386 0.614 36 H -0.273 1.273 37 H -0.309 1.309 38 H 0.174 0.826 39 H 0.081 0.919 40 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.700 -12.252 25.291 30.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 N 0.052 4.948 3 H 0.272 0.728 4 C -0.188 4.188 5 C -0.111 4.111 6 C -0.134 4.134 7 H 0.151 0.849 8 C -0.192 4.192 9 C 0.011 3.989 10 H 0.122 0.878 11 N -0.318 5.318 12 C 0.191 3.809 13 N -0.292 5.292 14 C 0.028 3.972 15 C -0.292 4.292 16 C -0.170 4.170 17 O -0.356 6.356 18 Si 0.666 3.334 19 C 0.044 3.956 20 N -0.315 5.315 21 C -0.171 4.171 22 H 0.140 0.860 23 H 0.141 0.859 24 H 0.145 0.855 25 H 0.141 0.859 26 H 0.143 0.857 27 H 0.139 0.861 28 H 0.161 0.839 29 H 0.157 0.843 30 H 0.116 0.884 31 H 0.098 0.902 32 H 0.257 0.743 33 H 0.204 0.796 34 H 0.144 0.856 35 H 0.235 0.765 36 H -0.199 1.199 37 H -0.238 1.238 38 H 0.192 0.808 39 H 0.100 0.900 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -11.210 -12.674 25.667 30.742 hybrid contribution 1.755 1.224 -0.511 2.200 sum -9.454 -11.449 25.156 29.211 Atomic orbital electron populations 1.24216 0.76176 1.09746 1.09558 1.44802 1.15987 1.19422 1.14561 0.72765 1.24127 1.05637 1.02457 0.86628 1.23869 1.05624 0.99652 0.81950 1.22794 1.01659 0.96199 0.92780 0.84932 1.23782 1.00415 0.99969 0.95083 1.22780 0.86617 0.99346 0.90179 0.87808 1.44313 1.25192 1.24953 1.37315 1.19830 0.85360 0.88004 0.87704 1.67936 1.31616 1.05182 1.24452 1.23161 0.94004 0.93578 0.86410 1.21662 0.99875 1.02374 1.05266 1.24878 0.95811 0.96779 0.99577 1.86614 1.36287 1.71777 1.40925 0.94415 0.82277 0.78802 0.77871 1.23053 0.97222 0.85762 0.89601 1.68012 1.22181 1.30109 1.11234 1.23361 1.03063 0.95546 0.95093 0.85955 0.85874 0.85548 0.85880 0.85658 0.86053 0.83862 0.84322 0.88397 0.90188 0.74326 0.79568 0.85574 0.76522 1.19881 1.23778 0.80847 0.89978 0.87835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 3.47 8.98 127.69 1.15 4.62 16 2 N -0.37 24.38 0.66 -948.86 -0.62 23.76 16 3 H 0.44 -29.66 8.44 -89.69 -0.76 -30.41 16 4 C -0.05 2.96 9.19 127.69 1.17 4.13 16 5 C 0.01 -0.68 4.49 86.30 0.39 -0.29 16 6 C -0.12 6.09 3.57 -10.21 -0.04 6.05 16 7 H 0.13 -7.33 6.10 -2.39 -0.01 -7.35 16 8 C -0.15 6.78 7.45 31.18 0.23 7.01 16 9 C 0.12 -4.03 4.23 45.52 0.19 -3.84 16 10 H 0.10 -3.14 7.40 -2.39 -0.02 -3.16 16 11 N -0.68 17.96 5.51 -327.91 -1.81 16.16 16 12 C 0.55 -9.61 8.43 261.48 2.20 -7.41 16 13 N -0.57 10.19 9.14 -197.99 -1.81 8.38 16 14 C 0.20 -3.69 9.92 84.71 0.84 -2.85 16 15 C -0.28 4.94 5.40 -19.69 -0.11 4.83 16 16 C -0.06 1.05 2.85 71.24 0.20 1.26 16 17 O -0.55 7.50 12.79 -148.98 -1.90 5.59 16 18 Si 0.76 -14.04 29.87 68.60 2.05 -11.99 16 19 C 0.21 -3.13 10.92 84.71 0.93 -2.20 16 20 N -0.59 8.13 10.46 -197.99 -2.07 6.06 16 21 C -0.13 5.68 7.39 31.12 0.23 5.91 16 22 H 0.12 -7.62 6.10 -2.39 -0.01 -7.63 16 23 H 0.12 -7.69 8.11 -2.39 -0.02 -7.71 16 24 H 0.13 -7.93 8.14 -2.39 -0.02 -7.95 16 25 H 0.12 -7.73 8.11 -2.39 -0.02 -7.75 16 26 H 0.12 -7.88 8.14 -2.39 -0.02 -7.89 16 27 H 0.12 -7.59 8.14 -2.39 -0.02 -7.61 16 28 H 0.14 -8.89 8.09 -2.39 -0.02 -8.91 16 29 H 0.14 -8.54 7.80 -2.39 -0.02 -8.56 16 30 H 0.10 -4.34 7.91 -2.39 -0.02 -4.36 16 31 H 0.08 -3.38 8.14 -2.39 -0.02 -3.40 16 32 H 0.42 -11.80 8.83 -92.70 -0.82 -12.62 16 33 H 0.19 -4.45 5.04 -2.91 -0.01 -4.47 16 34 H 0.13 -2.34 7.96 -2.38 -0.02 -2.36 16 35 H 0.39 -7.46 8.70 -74.06 -0.64 -8.10 16 36 H -0.27 4.40 7.11 99.48 0.71 5.11 16 37 H -0.31 2.58 7.11 99.48 0.71 3.28 16 38 H 0.17 -2.87 8.06 -2.91 -0.02 -2.90 16 39 H 0.08 -3.30 8.14 -2.39 -0.02 -3.32 16 40 H 0.10 -4.54 8.07 -2.39 -0.02 -4.56 16 Total: 1.00 -77.58 320.87 0.10 -77.48 By element: Atomic # 1 Polarization: -141.52 SS G_CDS: -1.12 Total: -142.65 kcal Atomic # 6 Polarization: 9.82 SS G_CDS: 7.39 Total: 17.21 kcal Atomic # 7 Polarization: 60.66 SS G_CDS: -6.31 Total: 54.35 kcal Atomic # 8 Polarization: 7.50 SS G_CDS: -1.90 Total: 5.59 kcal Atomic # 14 Polarization: -14.04 SS G_CDS: 2.05 Total: -11.99 kcal Total: -77.58 0.10 -77.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16607412_12175864.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 241.103 kcal (2) G-P(sol) polarization free energy of solvation -77.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 163.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 163.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds