Wall clock time and date at job start Mon Mar 8 2021 08:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33326 * 125.95061 * 2 1 4 4 C 1.50696 * 122.71175 * 0.02562 * 3 2 1 5 5 O 1.42898 * 109.47196 * 329.99897 * 4 3 2 6 6 Si 1.86301 * 109.47391 * 209.99765 * 4 3 2 7 7 N 1.32126 * 114.58064 * 179.75306 * 3 2 1 8 8 C 1.29694 * 116.86214 * 0.47382 * 7 3 2 9 9 N 1.38610 * 124.94690 * 179.80806 * 8 7 3 10 10 C 1.46499 * 119.99595 * 179.72459 * 9 8 7 11 11 H 1.08998 * 112.85050 * 336.19521 * 10 9 8 12 12 C 1.53778 * 113.69233 * 107.47223 * 10 9 8 13 13 C 1.53778 * 87.08449 * 139.98872 * 12 10 9 14 14 H 1.09000 * 113.61263 * 89.11673 * 13 12 10 15 15 C 1.52997 * 113.61422 * 220.01977 * 13 12 10 16 16 N 1.46901 * 109.46952 * 272.49527 * 15 13 12 17 17 H 1.00904 * 109.46983 * 54.99800 * 16 15 13 18 18 C 1.46910 * 109.47166 * 174.99957 * 16 15 13 19 19 C 1.46903 * 109.47169 * 294.99939 * 16 15 13 20 20 C 1.53784 * 87.08081 * 334.56700 * 13 12 10 21 21 S 1.70971 * 110.09991 * 359.55084 * 8 7 3 22 22 H 1.09000 * 109.47111 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47043 * 300.02159 * 1 2 3 24 24 H 1.09004 * 109.46999 * 60.01801 * 1 2 3 25 25 H 1.09007 * 109.47249 * 89.99924 * 4 3 2 26 26 H 0.96700 * 114.00117 * 300.00034 * 5 4 3 27 27 H 1.48498 * 109.99927 * 58.68096 * 6 4 3 28 28 H 1.48499 * 110.00040 * 180.02562 * 6 4 3 29 29 H 0.96993 * 119.99758 * 359.72898 * 9 8 7 30 30 H 1.08999 * 113.61111 * 254.53935 * 12 10 9 31 31 H 1.09004 * 113.61682 * 25.43331 * 12 10 9 32 32 H 1.09004 * 109.47170 * 32.49387 * 15 13 12 33 33 H 1.08995 * 109.47328 * 152.49879 * 15 13 12 34 34 H 1.08993 * 109.46529 * 60.00237 * 18 16 15 35 35 H 1.08997 * 109.46977 * 179.97438 * 18 16 15 36 36 H 1.08994 * 109.46844 * 300.00188 * 18 16 15 37 37 H 1.09001 * 109.47089 * 300.00032 * 19 16 15 38 38 H 1.09000 * 109.46990 * 59.99864 * 19 16 15 39 39 H 1.08996 * 109.46851 * 180.02562 * 19 16 15 40 40 H 1.09004 * 113.61451 * 270.88641 * 20 13 12 41 41 H 1.08994 * 113.61477 * 139.97943 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2898 1.0793 0.0000 4 6 1.7414 2.4830 0.0006 5 8 0.4811 2.5023 -0.6726 6 14 2.9320 3.6152 -0.8777 7 7 3.5851 0.8188 0.0052 8 6 3.9315 -0.4310 0.0000 9 7 5.2385 -0.8926 0.0003 10 6 5.5065 -2.3328 0.0002 11 1 4.6804 -2.9172 0.4052 12 6 6.0356 -2.8628 -1.3430 13 6 6.9920 -3.7485 -0.5272 14 1 6.5719 -4.7199 -0.2664 15 6 8.3962 -3.8484 -1.1265 16 7 8.4358 -4.9473 -2.1006 17 1 7.7124 -4.8112 -2.7908 18 6 9.7470 -4.9677 -2.7628 19 6 8.2173 -6.2241 -1.4075 20 6 6.8745 -2.7048 0.5961 21 16 2.5413 -1.4261 -0.0001 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5142 0.8898 24 1 -0.3633 0.5136 -0.8902 25 1 1.6096 2.8212 1.0284 26 1 0.5230 2.2127 -1.5943 27 1 3.1449 3.1465 -2.2706 28 1 2.4030 5.0028 -0.8834 29 1 5.9755 -0.2620 0.0007 30 1 5.2962 -3.4268 -1.9116 31 1 6.5440 -2.1065 -1.9411 32 1 8.6459 -2.9118 -1.6251 33 1 9.1174 -4.0408 -0.3323 34 1 10.5282 -5.1148 -2.0172 35 1 9.7765 -5.7834 -3.4852 36 1 9.9090 -4.0205 -3.2770 37 1 8.9987 -6.3711 -0.6619 38 1 7.2445 -6.2089 -0.9162 39 1 8.2472 -7.0395 -2.1302 40 1 7.6123 -1.9053 0.5283 41 1 6.8124 -3.1413 1.5929 There are 50 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 50 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_16607412_15704122.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:06:04 Heat of formation + Delta-G solvation = 175.166354 kcal Electronic energy + Delta-G solvation = -20577.591299 eV Core-core repulsion = 17513.472431 eV Total energy + Delta-G solvation = -3064.118868 eV No. of doubly occupied orbitals = 50 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 285.138 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -44.56086 -42.09873 -41.53605 -38.65816 -36.70032 -33.61701 -32.22431 -31.97463 -30.04182 -28.82247 -28.10896 -26.52422 -25.87428 -24.90261 -23.01612 -21.84484 -21.41852 -20.40856 -19.98777 -19.59729 -18.71232 -18.61437 -17.90471 -17.76398 -17.45651 -16.98928 -16.45510 -16.36818 -16.21592 -16.01213 -15.88073 -15.76953 -15.44064 -15.35757 -15.14044 -14.90466 -14.61891 -14.51570 -14.22928 -14.07915 -13.78859 -13.47807 -13.45675 -13.05133 -12.51567 -12.01206 -11.50248 -11.28578 -10.87342 -9.59992 -5.37356 -1.54385 -0.88931 -0.76088 -0.15099 0.37948 0.45641 0.63615 0.64443 0.79268 1.08937 1.16981 1.20810 1.28947 1.43072 1.53353 1.60059 1.63713 1.72948 1.82382 1.92807 2.01962 2.08531 2.15575 2.24537 2.27013 2.51421 2.64241 2.76446 2.84187 2.88750 3.05175 3.20088 3.30668 3.40290 3.53687 3.86974 4.04956 4.08464 4.21902 4.47304 4.56122 5.17570 5.65298 6.04634 Molecular weight = 285.14amu Principal moments of inertia in cm(-1) A = 0.028908 B = 0.003741 C = 0.003494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.370073 B = 7482.418483 C = 8011.898449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.227 4.227 3 C 0.065 3.935 4 C -0.044 4.044 5 O -0.523 6.523 6 Si 0.722 3.278 7 N -0.526 5.526 8 C 0.307 3.693 9 N -0.688 5.688 10 C 0.137 3.863 11 H 0.114 0.886 12 C -0.164 4.164 13 C -0.147 4.147 14 H 0.119 0.881 15 C 0.003 3.997 16 N -0.387 5.387 17 H 0.428 0.572 18 C -0.048 4.048 19 C -0.053 4.053 20 C -0.128 4.128 21 S 0.096 5.904 22 H 0.060 0.940 23 H 0.081 0.919 24 H 0.083 0.917 25 H 0.127 0.873 26 H 0.375 0.625 27 H -0.268 1.268 28 H -0.257 1.257 29 H 0.415 0.585 30 H 0.087 0.913 31 H 0.101 0.899 32 H 0.132 0.868 33 H 0.133 0.867 34 H 0.123 0.877 35 H 0.125 0.875 36 H 0.123 0.877 37 H 0.123 0.877 38 H 0.124 0.876 39 H 0.125 0.875 40 H 0.103 0.897 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.188 -21.178 -5.951 30.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.349 4.349 3 C -0.065 4.065 4 C -0.156 4.156 5 O -0.328 6.328 6 Si 0.622 3.378 7 N -0.251 5.251 8 C -0.064 4.064 9 N -0.329 5.329 10 C 0.030 3.970 11 H 0.132 0.868 12 C -0.204 4.204 13 C -0.166 4.166 14 H 0.137 0.863 15 C -0.119 4.119 16 N 0.037 4.963 17 H 0.262 0.738 18 C -0.190 4.190 19 C -0.195 4.195 20 C -0.167 4.167 21 S 0.345 5.655 22 H 0.079 0.921 23 H 0.099 0.901 24 H 0.102 0.898 25 H 0.144 0.856 26 H 0.223 0.777 27 H -0.193 1.193 28 H -0.183 1.183 29 H 0.254 0.746 30 H 0.106 0.894 31 H 0.119 0.881 32 H 0.150 0.850 33 H 0.151 0.849 34 H 0.141 0.859 35 H 0.143 0.857 36 H 0.142 0.858 37 H 0.142 0.858 38 H 0.142 0.858 39 H 0.143 0.857 40 H 0.121 0.879 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 21.552 -21.295 -5.839 30.856 hybrid contribution -0.939 0.422 -0.809 1.310 sum 20.613 -20.873 -6.648 30.079 Atomic orbital electron populations 1.20222 0.86060 1.01981 1.04147 1.25218 1.01562 0.92387 1.15700 1.20151 0.86601 0.97429 1.02287 1.24521 0.92049 0.95013 1.04032 1.86666 1.28365 1.89013 1.28792 0.93815 0.85999 0.76928 0.81068 1.65732 1.17282 1.16449 1.25636 1.23263 0.91616 0.91658 0.99874 1.43681 1.02112 1.05765 1.81325 1.22366 0.97866 0.80949 0.95854 0.86838 1.23935 0.99021 0.99129 0.98301 1.23010 0.92202 1.01463 0.99927 0.86284 1.24064 1.02470 0.90945 0.94421 1.45032 1.17812 1.15938 1.17470 0.73774 1.24153 0.82792 1.09629 1.02395 1.24203 1.08920 0.83793 1.02534 1.23366 0.97168 0.97558 0.98598 1.83820 0.96631 1.10974 1.74077 0.92076 0.90089 0.89838 0.85582 0.77650 1.19313 1.18263 0.74624 0.89432 0.88070 0.84966 0.84890 0.85890 0.85658 0.85819 0.85820 0.85781 0.85657 0.87867 0.88633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 0.55 8.91 36.01 0.32 0.87 16 2 C -0.23 1.83 6.50 -36.02 -0.23 1.59 16 3 C 0.07 -0.48 5.91 -84.18 -0.50 -0.98 16 4 C -0.04 0.32 2.94 36.00 0.11 0.43 16 5 O -0.52 3.59 10.17 -35.23 -0.36 3.24 16 6 Si 0.72 -5.17 32.09 -169.99 -5.45 -10.62 16 7 N -0.53 4.34 8.96 -11.36 -0.10 4.24 16 8 C 0.31 -3.38 8.24 -87.67 -0.72 -4.11 16 9 N -0.69 10.80 5.51 -54.99 -0.30 10.50 16 10 C 0.14 -2.74 4.23 -67.12 -0.28 -3.02 16 11 H 0.11 -2.15 7.06 -51.93 -0.37 -2.51 16 12 C -0.16 3.96 7.43 -25.92 -0.19 3.76 16 13 C -0.15 4.06 3.58 -89.81 -0.32 3.74 16 14 H 0.12 -3.42 6.10 -51.93 -0.32 -3.74 16 15 C 0.00 -0.08 4.48 -3.82 -0.02 -0.10 16 16 N -0.39 12.95 0.66 -251.26 -0.17 12.79 16 17 H 0.43 -14.84 8.44 -39.29 -0.33 -15.17 16 18 C -0.05 1.55 9.19 60.07 0.55 2.10 16 19 C -0.05 1.70 8.98 60.07 0.54 2.24 16 20 C -0.13 2.99 7.39 -25.91 -0.19 2.80 16 21 S 0.10 -1.05 21.69 -107.50 -2.33 -3.38 16 22 H 0.06 -0.56 8.14 -51.93 -0.42 -0.98 16 23 H 0.08 -0.62 8.14 -51.93 -0.42 -1.04 16 24 H 0.08 -0.74 6.40 -51.93 -0.33 -1.08 16 25 H 0.13 -0.97 7.96 -51.93 -0.41 -1.38 16 26 H 0.38 -3.56 8.13 45.56 0.37 -3.19 16 27 H -0.27 1.29 7.11 56.52 0.40 1.69 16 28 H -0.26 1.02 7.11 56.52 0.40 1.42 16 29 H 0.41 -6.83 8.85 -40.82 -0.36 -7.20 16 30 H 0.09 -2.06 8.14 -51.93 -0.42 -2.48 16 31 H 0.10 -2.42 7.90 -51.93 -0.41 -2.83 16 32 H 0.13 -4.14 7.79 -51.93 -0.40 -4.55 16 33 H 0.13 -4.17 8.09 -51.93 -0.42 -4.59 16 34 H 0.12 -3.92 8.14 -51.93 -0.42 -4.34 16 35 H 0.12 -4.02 8.14 -51.93 -0.42 -4.44 16 36 H 0.12 -3.96 8.11 -51.93 -0.42 -4.38 16 37 H 0.12 -3.94 8.11 -51.93 -0.42 -4.36 16 38 H 0.12 -3.96 6.10 -51.93 -0.32 -4.28 16 39 H 0.12 -4.02 8.14 -51.93 -0.42 -4.44 16 40 H 0.10 -2.43 8.08 -51.93 -0.42 -2.85 16 41 H 0.10 -2.12 8.14 -51.93 -0.42 -2.54 16 LS Contribution 335.17 15.07 5.05 5.05 Total: 1.00 -36.79 335.17 -11.33 -48.12 By element: Atomic # 1 Polarization: -72.53 SS G_CDS: -6.72 Total: -79.26 kcal Atomic # 6 Polarization: 10.27 SS G_CDS: -0.94 Total: 9.33 kcal Atomic # 7 Polarization: 28.09 SS G_CDS: -0.57 Total: 27.52 kcal Atomic # 8 Polarization: 3.59 SS G_CDS: -0.36 Total: 3.24 kcal Atomic # 14 Polarization: -5.17 SS G_CDS: -5.45 Total: -10.62 kcal Atomic # 16 Polarization: -1.05 SS G_CDS: -2.33 Total: -3.38 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -36.79 -11.33 -48.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16607412_15704122.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 223.284 kcal (2) G-P(sol) polarization free energy of solvation -36.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 186.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 175.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds