Wall clock time and date at job start Mon Mar 8 2021 08:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33326 * 125.95061 * 2 1 4 4 C 1.50696 * 122.71175 * 0.02562 * 3 2 1 5 5 O 1.42898 * 109.47196 * 329.99897 * 4 3 2 6 6 Si 1.86301 * 109.47391 * 209.99765 * 4 3 2 7 7 N 1.32126 * 114.58064 * 179.75306 * 3 2 1 8 8 C 1.29694 * 116.86214 * 0.47382 * 7 3 2 9 9 N 1.38610 * 124.94690 * 179.80806 * 8 7 3 10 10 C 1.46499 * 119.99595 * 179.72459 * 9 8 7 11 11 H 1.08998 * 112.85050 * 336.19521 * 10 9 8 12 12 C 1.53778 * 113.69233 * 107.47223 * 10 9 8 13 13 C 1.53778 * 87.08449 * 139.98872 * 12 10 9 14 14 H 1.09000 * 113.61263 * 89.11673 * 13 12 10 15 15 C 1.52997 * 113.61422 * 220.01977 * 13 12 10 16 16 N 1.46901 * 109.46952 * 272.49527 * 15 13 12 17 17 H 1.00904 * 109.46983 * 54.99800 * 16 15 13 18 18 C 1.46910 * 109.47166 * 174.99957 * 16 15 13 19 19 C 1.46903 * 109.47169 * 294.99939 * 16 15 13 20 20 C 1.53784 * 87.08081 * 334.56700 * 13 12 10 21 21 S 1.70971 * 110.09991 * 359.55084 * 8 7 3 22 22 H 1.09000 * 109.47111 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47043 * 300.02159 * 1 2 3 24 24 H 1.09004 * 109.46999 * 60.01801 * 1 2 3 25 25 H 1.09007 * 109.47249 * 89.99924 * 4 3 2 26 26 H 0.96700 * 114.00117 * 300.00034 * 5 4 3 27 27 H 1.48498 * 109.99927 * 58.68096 * 6 4 3 28 28 H 1.48499 * 110.00040 * 180.02562 * 6 4 3 29 29 H 0.96993 * 119.99758 * 359.72898 * 9 8 7 30 30 H 1.08999 * 113.61111 * 254.53935 * 12 10 9 31 31 H 1.09004 * 113.61682 * 25.43331 * 12 10 9 32 32 H 1.09004 * 109.47170 * 32.49387 * 15 13 12 33 33 H 1.08995 * 109.47328 * 152.49879 * 15 13 12 34 34 H 1.08993 * 109.46529 * 60.00237 * 18 16 15 35 35 H 1.08997 * 109.46977 * 179.97438 * 18 16 15 36 36 H 1.08994 * 109.46844 * 300.00188 * 18 16 15 37 37 H 1.09001 * 109.47089 * 300.00032 * 19 16 15 38 38 H 1.09000 * 109.46990 * 59.99864 * 19 16 15 39 39 H 1.08996 * 109.46851 * 180.02562 * 19 16 15 40 40 H 1.09004 * 113.61451 * 270.88641 * 20 13 12 41 41 H 1.08994 * 113.61477 * 139.97943 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2898 1.0793 0.0000 4 6 1.7414 2.4830 0.0006 5 8 0.4811 2.5023 -0.6726 6 14 2.9320 3.6152 -0.8777 7 7 3.5851 0.8188 0.0052 8 6 3.9315 -0.4310 0.0000 9 7 5.2385 -0.8926 0.0003 10 6 5.5065 -2.3328 0.0002 11 1 4.6804 -2.9172 0.4052 12 6 6.0356 -2.8628 -1.3430 13 6 6.9920 -3.7485 -0.5272 14 1 6.5719 -4.7199 -0.2664 15 6 8.3962 -3.8484 -1.1265 16 7 8.4358 -4.9473 -2.1006 17 1 7.7124 -4.8112 -2.7908 18 6 9.7470 -4.9677 -2.7628 19 6 8.2173 -6.2241 -1.4075 20 6 6.8745 -2.7048 0.5961 21 16 2.5413 -1.4261 -0.0001 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5142 0.8898 24 1 -0.3633 0.5136 -0.8902 25 1 1.6096 2.8212 1.0284 26 1 0.5230 2.2127 -1.5943 27 1 3.1449 3.1465 -2.2706 28 1 2.4030 5.0028 -0.8834 29 1 5.9755 -0.2620 0.0007 30 1 5.2962 -3.4268 -1.9116 31 1 6.5440 -2.1065 -1.9411 32 1 8.6459 -2.9118 -1.6251 33 1 9.1174 -4.0408 -0.3323 34 1 10.5282 -5.1148 -2.0172 35 1 9.7765 -5.7834 -3.4852 36 1 9.9090 -4.0205 -3.2770 37 1 8.9987 -6.3711 -0.6619 38 1 7.2445 -6.2089 -0.9162 39 1 8.2472 -7.0395 -2.1302 40 1 7.6123 -1.9053 0.5283 41 1 6.8124 -3.1413 1.5929 There are 50 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 50 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_16607412_15704122.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:06:03 Heat of formation + Delta-G solvation = 151.048666 kcal Electronic energy + Delta-G solvation = -20578.637120 eV Core-core repulsion = 17513.472431 eV Total energy + Delta-G solvation = -3065.164689 eV No. of doubly occupied orbitals = 50 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 285.138 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.13737 -41.11595 -39.83024 -37.94517 -35.49009 -32.67274 -30.24621 -29.38560 -29.12250 -26.87411 -25.97343 -25.57496 -24.52395 -23.39854 -21.39996 -20.27610 -19.50625 -18.95257 -18.08388 -17.73643 -17.46002 -17.17639 -16.72313 -16.14429 -16.13653 -15.78815 -15.50996 -14.73529 -14.33235 -14.06273 -13.91311 -13.81347 -13.60406 -13.58457 -13.49657 -13.42971 -13.25916 -13.19556 -13.05086 -12.78717 -12.51353 -12.17856 -12.03175 -11.80250 -11.50788 -10.95865 -10.69418 -10.59223 -10.07589 -8.65593 -4.86013 -0.07670 0.11579 0.65176 1.02915 1.24199 1.60150 1.80650 1.93915 1.96854 2.92627 2.96076 3.16467 3.24293 3.38499 3.42317 3.48952 3.65776 3.76099 3.85528 4.08015 4.12021 4.23190 4.26157 4.30700 4.38215 4.48584 4.50551 4.62061 4.67688 4.73092 4.73460 4.79417 4.82512 4.86830 4.88851 4.96576 4.98259 5.04700 5.20051 5.26459 5.70388 6.26565 6.40147 6.90290 Molecular weight = 285.14amu Principal moments of inertia in cm(-1) A = 0.028908 B = 0.003741 C = 0.003494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.370073 B = 7482.418483 C = 8011.898449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C -0.261 4.261 3 C 0.058 3.942 4 C -0.047 4.047 5 O -0.535 6.535 6 Si 0.789 3.211 7 N -0.560 5.560 8 C 0.310 3.690 9 N -0.675 5.675 10 C 0.102 3.898 11 H 0.100 0.900 12 C -0.156 4.156 13 C -0.119 4.119 14 H 0.134 0.866 15 C 0.010 3.990 16 N -0.372 5.372 17 H 0.437 0.563 18 C -0.047 4.047 19 C -0.055 4.055 20 C -0.127 4.127 21 S 0.126 5.874 22 H 0.066 0.934 23 H 0.066 0.934 24 H 0.083 0.917 25 H 0.126 0.874 26 H 0.385 0.615 27 H -0.299 1.299 28 H -0.303 1.303 29 H 0.419 0.581 30 H 0.087 0.913 31 H 0.105 0.895 32 H 0.141 0.859 33 H 0.143 0.857 34 H 0.120 0.880 35 H 0.124 0.876 36 H 0.124 0.876 37 H 0.122 0.878 38 H 0.123 0.877 39 H 0.125 0.875 40 H 0.108 0.892 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.275 -23.327 -6.445 33.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.384 4.384 3 C -0.073 4.073 4 C -0.159 4.159 5 O -0.342 6.342 6 Si 0.695 3.305 7 N -0.287 5.287 8 C -0.062 4.062 9 N -0.315 5.315 10 C -0.003 4.003 11 H 0.118 0.882 12 C -0.195 4.195 13 C -0.137 4.137 14 H 0.152 0.848 15 C -0.112 4.112 16 N 0.052 4.948 17 H 0.273 0.727 18 C -0.189 4.189 19 C -0.197 4.197 20 C -0.166 4.166 21 S 0.375 5.625 22 H 0.085 0.915 23 H 0.085 0.915 24 H 0.101 0.899 25 H 0.144 0.856 26 H 0.234 0.766 27 H -0.226 1.226 28 H -0.232 1.232 29 H 0.258 0.742 30 H 0.106 0.894 31 H 0.124 0.876 32 H 0.159 0.841 33 H 0.161 0.839 34 H 0.139 0.861 35 H 0.142 0.858 36 H 0.142 0.858 37 H 0.140 0.860 38 H 0.142 0.858 39 H 0.143 0.857 40 H 0.126 0.874 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 23.679 -23.506 -6.335 33.961 hybrid contribution -1.506 1.016 -0.661 1.933 sum 22.174 -22.490 -6.996 32.348 Atomic orbital electron populations 1.20142 0.86296 1.02086 1.03460 1.25326 1.01964 0.93839 1.17298 1.20105 0.87348 0.97214 1.02585 1.24535 0.91723 0.95722 1.03931 1.86627 1.28780 1.89147 1.29657 0.93032 0.85134 0.73404 0.78975 1.65722 1.16839 1.17748 1.28393 1.23672 0.93416 0.91136 0.97971 1.44137 1.00358 1.07830 1.79188 1.22984 0.99295 0.78298 0.99749 0.88210 1.23854 0.99660 0.99635 0.96366 1.22801 0.93716 1.00513 0.96708 0.84789 1.23880 0.99943 0.92084 0.95251 1.44804 1.17987 1.14902 1.17092 0.72680 1.24124 0.82872 1.09592 1.02266 1.24214 1.08796 0.84094 1.02614 1.23345 0.94912 0.98989 0.99376 1.83569 0.95643 1.09188 1.74060 0.91510 0.91492 0.89896 0.85637 0.76590 1.22558 1.23152 0.74164 0.89450 0.87647 0.84120 0.83948 0.86128 0.85755 0.85800 0.85960 0.85839 0.85651 0.87378 0.89734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 0.87 8.91 71.24 0.63 1.50 16 2 C -0.26 3.55 6.50 24.58 0.16 3.71 16 3 C 0.06 -0.70 5.91 41.40 0.24 -0.45 16 4 C -0.05 0.55 2.94 71.23 0.21 0.76 16 5 O -0.54 5.78 10.17 -148.98 -1.52 4.27 16 6 Si 0.79 -8.94 32.09 68.60 2.20 -6.74 16 7 N -0.56 7.93 8.96 -189.85 -1.70 6.23 16 8 C 0.31 -6.26 8.24 179.32 1.48 -4.78 16 9 N -0.67 20.26 5.51 -327.89 -1.81 18.45 16 10 C 0.10 -3.97 4.23 45.52 0.19 -3.78 16 11 H 0.10 -3.62 7.06 -2.39 -0.02 -3.64 16 12 C -0.16 7.50 7.43 31.12 0.23 7.73 16 13 C -0.12 6.60 3.58 -10.27 -0.04 6.57 16 14 H 0.13 -7.82 6.10 -2.39 -0.01 -7.84 16 15 C 0.01 -0.66 4.48 86.30 0.39 -0.28 16 16 N -0.37 25.05 0.66 -948.84 -0.62 24.42 16 17 H 0.44 -30.61 8.44 -89.69 -0.76 -31.36 16 18 C -0.05 3.02 9.19 127.69 1.17 4.20 16 19 C -0.06 3.57 8.98 127.69 1.15 4.71 16 20 C -0.13 5.89 7.39 31.12 0.23 6.13 16 21 S 0.13 -2.53 21.69 -56.49 -1.23 -3.76 16 22 H 0.07 -1.08 8.14 -2.39 -0.02 -1.10 16 23 H 0.07 -0.80 8.14 -2.39 -0.02 -0.82 16 24 H 0.08 -1.25 6.40 -2.38 -0.02 -1.26 16 25 H 0.13 -1.55 7.96 -2.38 -0.02 -1.56 16 26 H 0.38 -6.15 8.13 -74.06 -0.60 -6.75 16 27 H -0.30 1.95 7.11 99.48 0.71 2.66 16 28 H -0.30 1.24 7.11 99.48 0.71 1.95 16 29 H 0.42 -13.29 8.85 -92.71 -0.82 -14.11 16 30 H 0.09 -4.12 8.14 -2.39 -0.02 -4.14 16 31 H 0.11 -5.09 7.90 -2.38 -0.02 -5.11 16 32 H 0.14 -9.00 7.79 -2.38 -0.02 -9.01 16 33 H 0.14 -9.11 8.09 -2.39 -0.02 -9.13 16 34 H 0.12 -7.68 8.14 -2.39 -0.02 -7.70 16 35 H 0.12 -7.94 8.14 -2.39 -0.02 -7.96 16 36 H 0.12 -7.95 8.11 -2.39 -0.02 -7.97 16 37 H 0.12 -7.79 8.11 -2.39 -0.02 -7.81 16 38 H 0.12 -7.93 6.10 -2.39 -0.01 -7.95 16 39 H 0.13 -8.02 8.14 -2.39 -0.02 -8.04 16 40 H 0.11 -5.08 8.08 -2.39 -0.02 -5.10 16 41 H 0.08 -3.66 8.14 -2.39 -0.02 -3.68 16 Total: 1.00 -78.83 335.17 0.28 -78.55 By element: Atomic # 1 Polarization: -146.35 SS G_CDS: -1.10 Total: -147.44 kcal Atomic # 6 Polarization: 19.96 SS G_CDS: 6.05 Total: 26.01 kcal Atomic # 7 Polarization: 53.24 SS G_CDS: -4.13 Total: 49.11 kcal Atomic # 8 Polarization: 5.78 SS G_CDS: -1.52 Total: 4.27 kcal Atomic # 14 Polarization: -8.94 SS G_CDS: 2.20 Total: -6.74 kcal Atomic # 16 Polarization: -2.53 SS G_CDS: -1.23 Total: -3.76 kcal Total: -78.83 0.28 -78.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16607412_15704122.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 229.602 kcal (2) G-P(sol) polarization free energy of solvation -78.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 150.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 151.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds