Wall clock time and date at job start Mon Mar 8 2021 08:06:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 H 1.00894 * 109.47406 * 2 1 4 4 C 1.46905 * 109.47261 * 120.00329 * 2 1 3 5 5 C 1.46906 * 109.46560 * 239.99464 * 2 1 3 6 6 C 1.53000 * 109.46589 * 65.00417 * 5 2 1 7 7 H 1.08996 * 112.85125 * 316.18787 * 6 5 2 8 8 C 1.53777 * 113.69466 * 87.46173 * 6 5 2 9 9 C 1.53777 * 87.08529 * 139.98717 * 8 6 5 10 10 H 1.09003 * 113.69196 * 89.12694 * 9 8 6 11 11 N 1.46499 * 113.61851 * 220.02296 * 9 8 6 12 12 C 1.39155 * 119.99667 * 252.49827 * 11 9 8 13 13 N 1.32336 * 119.71524 * 0.02562 * 12 11 9 14 14 C 1.32008 * 121.64225 * 180.02562 * 13 12 11 15 15 C 1.37993 * 120.90165 * 359.95826 * 14 13 12 16 16 C 1.50695 * 120.32361 * 180.30007 * 15 14 13 17 17 O 1.42904 * 109.47371 * 119.72311 * 16 15 14 18 18 Si 1.86296 * 109.47359 * 359.71956 * 16 15 14 19 19 C 1.38905 * 119.34437 * 0.02562 * 15 14 13 20 20 C 1.38439 * 118.48658 * 0.02562 * 19 15 14 21 21 F 1.35100 * 120.46920 * 180.02562 * 20 19 15 22 22 C 1.53785 * 87.08179 * 334.56914 * 9 8 6 23 23 H 1.09007 * 109.46631 * 299.99792 * 1 2 3 24 24 H 1.08994 * 109.47412 * 60.00221 * 1 2 3 25 25 H 1.09007 * 109.47096 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46969 * 179.97438 * 4 2 1 27 27 H 1.09006 * 109.46509 * 299.99239 * 4 2 1 28 28 H 1.08997 * 109.47389 * 59.99431 * 4 2 1 29 29 H 1.08993 * 109.47534 * 305.00072 * 5 2 1 30 30 H 1.08998 * 109.46761 * 184.99886 * 5 2 1 31 31 H 1.09007 * 113.61616 * 25.44155 * 8 6 5 32 32 H 1.08999 * 113.61477 * 254.53818 * 8 6 5 33 33 H 0.97000 * 120.00711 * 72.49338 * 11 9 8 34 34 H 1.07997 * 119.55241 * 180.02562 * 14 13 12 35 35 H 1.09003 * 109.46861 * 239.71633 * 16 15 14 36 36 H 0.96700 * 113.99416 * 299.99327 * 17 16 15 37 37 H 1.48493 * 110.00402 * 58.68485 * 18 16 15 38 38 H 1.48507 * 109.99809 * 180.02562 * 18 16 15 39 39 H 1.08003 * 120.75417 * 179.97438 * 19 15 14 40 40 H 1.08998 * 113.61614 * 139.97969 * 22 9 8 41 41 H 1.08997 * 113.61164 * 270.88256 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 1 1.8054 0.9512 0.0000 4 6 1.9588 -0.6926 1.1994 5 6 1.9586 -0.6927 -1.1995 6 6 1.5538 0.0976 -2.4455 7 1 0.5236 0.4515 -2.4061 8 6 2.5645 1.1866 -2.8420 9 6 2.3123 0.7783 -4.3030 10 1 1.4898 1.3177 -4.7727 11 7 3.5246 0.7611 -5.1253 12 6 3.7312 1.7515 -6.0807 13 7 2.8293 2.7065 -6.2413 14 6 2.9864 3.6641 -7.1363 15 6 4.1059 3.7043 -7.9420 16 6 4.2752 4.8073 -8.9548 17 8 5.4654 5.5427 -8.6637 18 14 2.8055 5.9497 -8.8804 19 6 5.0779 2.7213 -7.8063 20 6 4.8859 1.7290 -6.8603 21 9 5.8059 0.7536 -6.6942 22 6 1.9133 -0.6060 -3.7649 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 3.0487 -0.6929 1.1991 27 1 1.5955 -0.1786 2.0894 28 1 1.5954 -1.7202 1.1995 29 1 1.5240 -1.6911 -1.2453 30 1 3.0449 -0.7709 -1.1558 31 1 3.5801 0.9846 -2.5014 32 1 2.2316 2.1976 -2.6075 33 1 4.1832 0.0595 -5.0039 34 1 2.2289 4.4271 -7.2385 35 1 4.3498 4.3757 -9.9529 36 1 5.4687 5.9554 -7.7892 37 1 2.6741 6.5201 -7.5157 38 1 2.9601 7.0416 -9.8750 39 1 5.9629 2.7306 -8.4253 40 1 1.0547 -1.0421 -4.2753 41 1 2.7508 -1.2980 -3.6765 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_16607412_17656566.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:06:07 Heat of formation + Delta-G solvation = 102.292274 kcal Electronic energy + Delta-G solvation = -22362.931915 eV Core-core repulsion = 18892.584387 eV Total energy + Delta-G solvation = -3470.347528 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 283.156 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.01543 -42.14964 -41.42454 -39.69336 -38.08945 -35.61873 -33.26475 -31.61221 -29.85668 -29.38974 -26.84160 -26.75152 -25.77181 -25.06801 -23.37912 -22.72139 -20.89116 -19.37363 -19.30596 -18.59770 -18.37916 -17.80435 -17.59058 -17.15182 -17.07615 -16.36039 -16.16415 -15.98631 -15.83744 -15.52439 -15.13167 -14.43759 -14.36656 -14.12577 -13.86031 -13.58746 -13.53101 -13.47964 -13.39208 -13.26168 -13.16013 -13.02726 -12.70851 -12.19288 -12.09160 -11.80975 -11.48644 -11.19132 -10.80429 -10.70392 -10.59526 -8.79118 -4.94471 -0.14353 0.04281 1.01774 1.26761 1.56275 1.96567 1.99101 2.47846 2.90414 2.95420 2.98855 3.17967 3.25495 3.38450 3.42312 3.48152 3.55286 3.76747 3.80796 3.82247 3.88736 3.96866 4.16472 4.24944 4.35868 4.37667 4.39818 4.49478 4.50412 4.66965 4.69459 4.72668 4.73048 4.82222 4.85287 4.88872 4.95550 5.00781 5.07336 5.19768 5.44625 5.98755 6.15365 6.46116 6.89371 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.025560 B = 0.003651 C = 0.003371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.206121 B = 7666.257331 C = 8305.378051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.371 5.371 3 H 0.436 0.564 4 C -0.047 4.047 5 C 0.011 3.989 6 C -0.116 4.116 7 H 0.133 0.867 8 C -0.154 4.154 9 C 0.113 3.887 10 H 0.106 0.894 11 N -0.703 5.703 12 C 0.384 3.616 13 N -0.518 5.518 14 C 0.149 3.851 15 C -0.203 4.203 16 C -0.073 4.073 17 O -0.550 6.550 18 Si 0.768 3.232 19 C -0.048 4.048 20 C -0.039 4.039 21 F -0.142 7.142 22 C -0.135 4.135 23 H 0.126 0.874 24 H 0.122 0.878 25 H 0.122 0.878 26 H 0.123 0.877 27 H 0.125 0.875 28 H 0.120 0.880 29 H 0.142 0.858 30 H 0.138 0.862 31 H 0.097 0.903 32 H 0.080 0.920 33 H 0.416 0.584 34 H 0.184 0.816 35 H 0.123 0.877 36 H 0.387 0.613 37 H -0.269 1.269 38 H -0.311 1.311 39 H 0.145 0.855 40 H 0.080 0.920 41 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.680 -11.830 26.211 31.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 N 0.053 4.947 3 H 0.273 0.727 4 C -0.189 4.189 5 C -0.111 4.111 6 C -0.135 4.135 7 H 0.150 0.850 8 C -0.193 4.193 9 C 0.009 3.991 10 H 0.124 0.876 11 N -0.336 5.336 12 C 0.145 3.855 13 N -0.235 5.235 14 C -0.008 4.008 15 C -0.208 4.208 16 C -0.182 4.182 17 O -0.359 6.359 18 Si 0.673 3.327 19 C -0.074 4.074 20 C -0.065 4.065 21 F -0.121 7.121 22 C -0.173 4.173 23 H 0.145 0.855 24 H 0.141 0.859 25 H 0.141 0.859 26 H 0.141 0.859 27 H 0.144 0.856 28 H 0.139 0.861 29 H 0.160 0.840 30 H 0.156 0.844 31 H 0.115 0.885 32 H 0.099 0.901 33 H 0.254 0.746 34 H 0.200 0.800 35 H 0.141 0.859 36 H 0.236 0.764 37 H -0.194 1.194 38 H -0.239 1.239 39 H 0.163 0.837 40 H 0.099 0.901 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -12.766 -11.552 26.430 31.543 hybrid contribution 2.634 0.363 -0.454 2.697 sum -10.132 -11.189 25.975 30.043 Atomic orbital electron populations 1.24217 0.76172 1.09723 1.09572 1.44800 1.15989 1.19421 1.14539 0.72742 1.24130 1.05630 1.02447 0.86645 1.23870 1.05572 0.99647 0.82032 1.22774 1.01705 0.96313 0.92739 0.84958 1.23751 1.00315 0.99973 0.95268 1.22730 0.87090 0.99005 0.90313 0.87625 1.44667 1.24827 1.27025 1.37093 1.18581 0.88060 0.89970 0.88870 1.67341 1.28966 1.04224 1.22980 1.22671 0.95209 0.94544 0.88352 1.20869 0.97093 0.99887 1.02965 1.25074 0.97267 0.95847 0.99999 1.86614 1.38773 1.69841 1.40632 0.94282 0.81387 0.79124 0.77917 1.21447 0.99704 0.91234 0.95023 1.18182 0.91071 0.92838 1.04438 1.91471 1.64927 1.60596 1.95077 1.23373 1.02947 0.95804 0.95220 0.85521 0.85945 0.85918 0.85887 0.85624 0.86094 0.83974 0.84383 0.88452 0.90098 0.74568 0.79963 0.85881 0.76398 1.19445 1.23933 0.83705 0.90104 0.88100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 3.46 8.98 127.69 1.15 4.61 16 2 N -0.37 24.36 0.66 -948.80 -0.62 23.73 16 3 H 0.44 -29.69 8.44 -89.70 -0.76 -30.45 16 4 C -0.05 2.96 9.19 127.69 1.17 4.13 16 5 C 0.01 -0.66 4.48 86.30 0.39 -0.28 16 6 C -0.12 6.14 3.57 -10.27 -0.04 6.11 16 7 H 0.13 -7.32 6.10 -2.39 -0.01 -7.33 16 8 C -0.15 6.87 7.43 31.12 0.23 7.10 16 9 C 0.11 -4.01 4.27 45.52 0.19 -3.81 16 10 H 0.11 -3.28 7.41 -2.39 -0.02 -3.29 16 11 N -0.70 19.44 5.51 -321.78 -1.77 17.67 16 12 C 0.38 -7.58 7.49 133.08 1.00 -6.59 16 13 N -0.52 10.12 9.13 -193.02 -1.76 8.35 16 14 C 0.15 -2.96 9.84 84.61 0.83 -2.12 16 15 C -0.20 3.58 5.40 -19.76 -0.11 3.48 16 16 C -0.07 1.24 2.84 71.23 0.20 1.44 16 17 O -0.55 7.10 12.78 -148.98 -1.90 5.19 16 18 Si 0.77 -14.27 29.82 68.60 2.05 -12.23 16 19 C -0.05 0.73 9.75 22.48 0.22 0.95 16 20 C -0.04 0.62 7.35 22.58 0.17 0.78 16 21 F -0.14 2.00 16.65 44.97 0.75 2.75 16 22 C -0.13 5.79 7.39 31.12 0.23 6.02 16 23 H 0.13 -7.95 8.14 -2.38 -0.02 -7.97 16 24 H 0.12 -7.62 6.10 -2.39 -0.01 -7.64 16 25 H 0.12 -7.65 8.11 -2.38 -0.02 -7.67 16 26 H 0.12 -7.73 8.11 -2.39 -0.02 -7.75 16 27 H 0.13 -7.90 8.14 -2.38 -0.02 -7.92 16 28 H 0.12 -7.56 8.14 -2.39 -0.02 -7.58 16 29 H 0.14 -8.79 8.09 -2.39 -0.02 -8.81 16 30 H 0.14 -8.48 7.79 -2.39 -0.02 -8.50 16 31 H 0.10 -4.36 7.90 -2.38 -0.02 -4.38 16 32 H 0.08 -3.46 8.14 -2.39 -0.02 -3.48 16 33 H 0.42 -12.21 8.20 -92.71 -0.76 -12.97 16 34 H 0.18 -4.47 4.88 -2.91 -0.01 -4.49 16 35 H 0.12 -2.17 7.96 -2.39 -0.02 -2.18 16 36 H 0.39 -7.36 8.70 -74.06 -0.64 -8.00 16 37 H -0.27 4.49 7.11 99.48 0.71 5.20 16 38 H -0.31 2.60 7.11 99.48 0.71 3.31 16 39 H 0.15 -2.14 8.06 -2.91 -0.02 -2.17 16 40 H 0.08 -3.24 8.14 -2.39 -0.02 -3.26 16 41 H 0.10 -4.40 8.08 -2.39 -0.02 -4.41 16 Total: 1.00 -75.76 331.36 1.30 -74.46 By element: Atomic # 1 Polarization: -140.68 SS G_CDS: -1.06 Total: -141.74 kcal Atomic # 6 Polarization: 16.18 SS G_CDS: 5.64 Total: 21.81 kcal Atomic # 7 Polarization: 53.91 SS G_CDS: -4.16 Total: 49.75 kcal Atomic # 8 Polarization: 7.10 SS G_CDS: -1.90 Total: 5.19 kcal Atomic # 9 Polarization: 2.00 SS G_CDS: 0.75 Total: 2.75 kcal Atomic # 14 Polarization: -14.27 SS G_CDS: 2.05 Total: -12.23 kcal Total: -75.76 1.30 -74.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16607412_17656566.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.752 kcal (2) G-P(sol) polarization free energy of solvation -75.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds