Wall clock time and date at job start Mon Mar 8 2021 08:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 H 1.00898 * 109.46959 * 2 1 4 4 C 1.46899 * 109.46905 * 240.00187 * 2 1 3 5 5 C 1.46898 * 109.46989 * 120.00373 * 2 1 3 6 6 C 1.53001 * 109.46911 * 184.99908 * 5 2 1 7 7 H 1.08999 * 112.85173 * 316.19898 * 6 5 2 8 8 C 1.53782 * 113.61454 * 87.49970 * 6 5 2 9 9 C 1.53783 * 87.08192 * 139.98130 * 8 6 5 10 10 H 1.09001 * 113.61586 * 220.02131 * 9 8 6 11 11 N 1.46493 * 113.69177 * 89.12476 * 9 8 6 12 12 C 1.38413 * 119.99920 * 107.46407 * 11 9 8 13 13 N 1.32490 * 119.21315 * 359.73979 * 12 11 9 14 14 C 1.32276 * 120.73622 * 179.71885 * 13 12 11 15 15 C 1.38604 * 119.20012 * 0.53391 * 14 13 12 16 16 C 1.50697 * 120.72431 * 179.75237 * 15 14 13 17 17 O 1.42901 * 109.47476 * 244.98039 * 16 15 14 18 18 Si 1.86299 * 109.47048 * 4.98480 * 16 15 14 19 19 C 1.38610 * 118.55708 * 359.73985 * 15 14 13 20 20 N 1.32272 * 119.19374 * 359.97438 * 19 15 14 21 21 C 1.53781 * 113.61525 * 185.00062 * 6 5 2 22 22 H 1.08992 * 109.47459 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47040 * 299.99723 * 1 2 3 24 24 H 1.09000 * 109.47033 * 59.99675 * 1 2 3 25 25 H 1.09000 * 109.47162 * 60.00217 * 4 2 1 26 26 H 1.09002 * 109.46776 * 179.97438 * 4 2 1 27 27 H 1.09001 * 109.47354 * 300.00199 * 4 2 1 28 28 H 1.09002 * 109.46759 * 304.99575 * 5 2 1 29 29 H 1.08998 * 109.47163 * 64.99853 * 5 2 1 30 30 H 1.08998 * 113.61689 * 254.52670 * 8 6 5 31 31 H 1.09001 * 113.61384 * 25.43392 * 8 6 5 32 32 H 0.97000 * 120.00364 * 287.46860 * 11 9 8 33 33 H 1.08004 * 120.40212 * 180.29337 * 14 13 12 34 34 H 1.09002 * 109.47203 * 124.97919 * 16 15 14 35 35 H 0.96701 * 114.00013 * 179.97438 * 17 16 15 36 36 H 1.48497 * 109.99802 * 299.99658 * 18 16 15 37 37 H 1.48497 * 110.00143 * 61.31516 * 18 16 15 38 38 H 1.07997 * 120.40238 * 180.02562 * 19 15 14 39 39 H 1.09001 * 113.61224 * 334.56644 * 21 6 5 40 40 H 1.08993 * 113.61674 * 105.38215 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 1 1.8054 0.9513 0.0000 4 6 1.9587 -0.6925 -1.1995 5 6 1.9587 -0.6926 1.1994 6 6 3.4835 -0.5846 1.2638 7 1 3.9616 -0.7638 0.3008 8 6 3.9817 0.6851 1.9741 9 6 5.0668 -0.1950 2.6168 10 1 5.2586 0.0426 3.6631 11 7 6.2932 -0.2924 1.8214 12 6 7.4402 0.3625 2.2353 13 7 7.4101 1.0773 3.3504 14 6 8.4902 1.7108 3.7767 15 6 9.6587 1.6289 3.0358 16 6 10.9077 2.3415 3.4867 17 8 11.2468 3.3549 2.5379 18 14 10.6099 3.1237 5.1510 19 6 9.6537 0.8771 1.8713 20 7 8.5408 0.2636 1.5043 21 6 4.1093 -1.3822 2.4201 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 1.5953 -0.1786 -2.0894 26 1 3.0487 -0.6920 -1.1997 27 1 1.5953 -1.7201 -1.1995 28 1 1.5241 -0.2330 2.0871 29 1 1.6703 -1.7428 1.1557 30 1 4.3776 1.4392 1.2938 31 1 3.2689 1.0926 2.6909 32 1 6.3014 -0.8157 1.0048 33 1 8.4608 2.2882 4.6890 34 1 11.7267 1.6263 3.5627 35 1 12.0424 3.8556 2.7647 36 1 9.4955 4.1010 5.0608 37 1 10.2875 2.0770 6.1538 38 1 10.5477 0.7927 1.2714 39 1 3.4313 -1.5399 3.2589 40 1 4.6066 -2.2978 2.1002 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_16607414_12175864.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:06:10 Heat of formation + Delta-G solvation = 167.933873 kcal Electronic energy + Delta-G solvation = -20249.837013 eV Core-core repulsion = 17186.363983 eV Total energy + Delta-G solvation = -3063.473030 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 266.161 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.42752 -42.04581 -39.90561 -37.91362 -35.68272 -34.94110 -32.46561 -30.05992 -29.43628 -26.94041 -26.82494 -26.20506 -25.64363 -23.80603 -23.16924 -20.66350 -19.89924 -19.25185 -18.66176 -18.30369 -17.79399 -17.25960 -16.72446 -16.50971 -16.40876 -15.93356 -15.48397 -15.20629 -15.09099 -14.84925 -14.20161 -14.02884 -13.82274 -13.66914 -13.52604 -13.31079 -13.23935 -13.16446 -13.02255 -12.40257 -12.11639 -12.06531 -11.98230 -11.87169 -11.41139 -11.26595 -10.66606 -10.10021 -9.27662 -4.97357 -0.20093 -0.08877 0.98073 1.26335 1.60113 1.61967 1.88206 2.55965 2.85500 2.86627 2.91830 3.12612 3.34482 3.36296 3.38097 3.41162 3.53942 3.71583 3.73773 3.82549 3.83915 4.03584 4.14723 4.22777 4.30956 4.39983 4.45936 4.48394 4.54236 4.62353 4.68334 4.69511 4.74550 4.79113 4.83504 4.91355 4.96023 5.02412 5.22842 5.60878 5.85414 6.20927 6.88523 7.06770 Molecular weight = 266.16amu Principal moments of inertia in cm(-1) A = 0.038589 B = 0.003747 C = 0.003669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.413642 B = 7470.195273 C = 7629.952557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.372 5.372 3 H 0.435 0.565 4 C -0.054 4.054 5 C 0.010 3.990 6 C -0.122 4.122 7 H 0.122 0.878 8 C -0.150 4.150 9 C 0.107 3.893 10 H 0.081 0.919 11 N -0.669 5.669 12 C 0.549 3.451 13 N -0.574 5.574 14 C 0.176 3.824 15 C -0.250 4.250 16 C -0.054 4.054 17 O -0.565 6.565 18 Si 0.760 3.240 19 C 0.218 3.782 20 N -0.582 5.582 21 C -0.126 4.126 22 H 0.122 0.878 23 H 0.125 0.875 24 H 0.124 0.876 25 H 0.126 0.874 26 H 0.117 0.883 27 H 0.124 0.876 28 H 0.145 0.855 29 H 0.144 0.856 30 H 0.068 0.932 31 H 0.116 0.884 32 H 0.422 0.578 33 H 0.159 0.841 34 H 0.099 0.901 35 H 0.406 0.594 36 H -0.291 1.291 37 H -0.288 1.288 38 H 0.191 0.809 39 H 0.119 0.881 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.837 -4.292 -9.321 24.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 N 0.052 4.948 3 H 0.271 0.729 4 C -0.197 4.197 5 C -0.111 4.111 6 C -0.140 4.140 7 H 0.140 0.860 8 C -0.189 4.189 9 C 0.001 3.999 10 H 0.099 0.901 11 N -0.307 5.307 12 C 0.192 3.808 13 N -0.297 5.297 14 C 0.010 3.990 15 C -0.258 4.258 16 C -0.166 4.166 17 O -0.376 6.376 18 Si 0.666 3.334 19 C 0.051 3.949 20 N -0.303 5.303 21 C -0.165 4.165 22 H 0.140 0.860 23 H 0.144 0.856 24 H 0.143 0.857 25 H 0.145 0.855 26 H 0.135 0.865 27 H 0.143 0.857 28 H 0.163 0.837 29 H 0.162 0.838 30 H 0.087 0.913 31 H 0.134 0.866 32 H 0.261 0.739 33 H 0.176 0.824 34 H 0.117 0.883 35 H 0.258 0.742 36 H -0.218 1.218 37 H -0.215 1.215 38 H 0.207 0.793 39 H 0.137 0.863 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -24.062 -5.124 -9.168 26.254 hybrid contribution 1.179 0.272 -0.117 1.215 sum -22.884 -4.852 -9.285 25.168 Atomic orbital electron populations 1.24142 0.75313 1.09653 1.09700 1.44812 1.16106 1.19251 1.14670 0.72871 1.24192 1.05537 1.02776 0.87156 1.23915 0.94825 1.03761 0.88645 1.23046 0.93832 0.96683 1.00467 0.85983 1.23698 0.98131 0.96525 1.00531 1.22050 0.82629 0.99429 0.95749 0.90088 1.43772 1.06033 1.52560 1.28316 1.19711 0.87498 0.87779 0.85777 1.67870 1.30876 1.14474 1.16472 1.22828 0.87328 0.91655 0.97236 1.21051 0.97664 1.06320 1.00766 1.24368 0.95677 0.93854 1.02700 1.86415 1.51539 1.50369 1.49243 0.93811 0.86153 0.79699 0.73690 1.23232 0.95303 0.85250 0.91155 1.68024 1.00179 1.27357 1.34779 1.23315 0.97250 0.96574 0.99381 0.85983 0.85633 0.85728 0.85538 0.86490 0.85698 0.83743 0.83798 0.91337 0.86565 0.73910 0.82445 0.88285 0.74239 1.21830 1.21478 0.79252 0.86298 0.90284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 2.90 9.19 127.69 1.17 4.08 16 2 N -0.37 23.90 0.66 -948.84 -0.62 23.28 16 3 H 0.44 -28.83 8.44 -89.70 -0.76 -29.59 16 4 C -0.05 3.34 8.97 127.69 1.15 4.49 16 5 C 0.01 -0.62 4.48 86.30 0.39 -0.24 16 6 C -0.12 6.16 3.46 -10.27 -0.04 6.13 16 7 H 0.12 -6.38 6.10 -2.39 -0.01 -6.39 16 8 C -0.15 6.26 7.43 31.12 0.23 6.50 16 9 C 0.11 -3.40 4.33 45.52 0.20 -3.21 16 10 H 0.08 -1.98 7.37 -2.39 -0.02 -1.99 16 11 N -0.67 16.82 5.42 -327.92 -1.78 15.05 16 12 C 0.55 -8.04 8.43 261.48 2.20 -5.84 16 13 N -0.57 6.75 9.13 -197.98 -1.81 4.94 16 14 C 0.18 -1.94 9.92 84.71 0.84 -1.10 16 15 C -0.25 3.19 5.40 -19.69 -0.11 3.08 16 16 C -0.05 0.95 2.82 71.23 0.20 1.15 16 17 O -0.57 9.64 12.82 -148.98 -1.91 7.73 16 18 Si 0.76 -13.46 29.92 68.60 2.05 -11.41 16 19 C 0.22 -2.86 10.99 84.72 0.93 -1.93 16 20 N -0.58 7.22 10.46 -197.98 -2.07 5.15 16 21 C -0.13 5.21 7.39 31.12 0.23 5.44 16 22 H 0.12 -7.55 8.14 -2.39 -0.02 -7.57 16 23 H 0.13 -7.83 8.11 -2.38 -0.02 -7.85 16 24 H 0.12 -7.71 8.14 -2.39 -0.02 -7.73 16 25 H 0.13 -7.72 8.14 -2.39 -0.02 -7.74 16 26 H 0.12 -6.98 6.10 -2.39 -0.01 -7.00 16 27 H 0.12 -7.62 8.11 -2.39 -0.02 -7.64 16 28 H 0.14 -8.84 7.79 -2.39 -0.02 -8.86 16 29 H 0.14 -8.80 8.09 -2.39 -0.02 -8.81 16 30 H 0.07 -2.59 8.14 -2.39 -0.02 -2.61 16 31 H 0.12 -5.15 7.90 -2.39 -0.02 -5.17 16 32 H 0.42 -12.29 8.82 -92.71 -0.82 -13.11 16 33 H 0.16 -1.93 5.04 -2.91 -0.01 -1.94 16 34 H 0.10 -2.14 7.96 -2.39 -0.02 -2.16 16 35 H 0.41 -10.75 8.74 -74.06 -0.65 -11.40 16 36 H -0.29 3.20 7.06 99.48 0.70 3.90 16 37 H -0.29 3.45 7.11 99.48 0.71 4.16 16 38 H 0.19 -3.32 8.06 -2.91 -0.02 -3.35 16 39 H 0.12 -5.11 8.10 -2.39 -0.02 -5.13 16 40 H 0.08 -3.02 8.14 -2.39 -0.02 -3.04 16 Total: 1.00 -77.88 320.81 0.13 -77.75 By element: Atomic # 1 Polarization: -139.91 SS G_CDS: -1.13 Total: -141.03 kcal Atomic # 6 Polarization: 11.15 SS G_CDS: 7.40 Total: 18.55 kcal Atomic # 7 Polarization: 54.70 SS G_CDS: -6.28 Total: 48.42 kcal Atomic # 8 Polarization: 9.64 SS G_CDS: -1.91 Total: 7.73 kcal Atomic # 14 Polarization: -13.46 SS G_CDS: 2.05 Total: -11.41 kcal Total: -77.88 0.13 -77.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16607414_12175864.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 245.683 kcal (2) G-P(sol) polarization free energy of solvation -77.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 167.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 167.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds